Wall clock time and date at job start Tue Mar 31 2020 23:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 108.49105 * 2 1 4 4 C 1.52679 * 108.65169 * 242.03761 * 2 1 3 5 5 O 1.39712 * 106.08098 * 150.64784 * 4 2 1 6 6 C 1.44958 * 115.13198 * 98.22678 * 5 4 2 7 7 C 1.54417 * 110.76331 * 320.84694 * 6 5 4 8 8 N 1.43758 * 115.48705 * 318.57617 * 7 6 5 9 9 S 1.65598 * 120.43096 * 267.76588 * 8 7 6 10 10 O 1.42099 * 106.40589 * 336.46084 * 9 8 7 11 11 O 1.42102 * 106.40379 * 203.54034 * 9 8 7 12 12 C 1.76201 * 107.21849 * 90.00192 * 9 8 7 13 13 C 1.38229 * 120.00424 * 90.00010 * 12 9 8 14 14 C 1.38234 * 120.00276 * 180.02562 * 13 12 9 15 15 C 1.38230 * 120.00084 * 359.94917 * 14 13 12 16 16 C 1.50701 * 120.00215 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.46789 * 90.00549 * 16 15 14 18 18 H 1.08006 * 120.00159 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00120 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00089 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99938 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 269.99556 * 21 19 17 23 23 H 1.48503 * 109.47261 * 149.99737 * 21 19 17 24 24 H 1.48500 * 109.47454 * 29.99730 * 21 19 17 25 25 C 1.38241 * 119.99907 * 0.28175 * 15 14 13 26 26 C 1.38232 * 119.99781 * 359.53439 * 25 15 14 27 27 C 1.47440 * 108.58927 * 118.04040 * 2 1 3 28 28 H 1.08999 * 109.47000 * 177.96152 * 1 2 3 29 29 H 1.09005 * 109.47337 * 297.96153 * 1 2 3 30 30 H 1.09004 * 109.47256 * 57.96187 * 1 2 3 31 31 H 1.09000 * 110.12730 * 31.50291 * 4 2 1 32 32 H 1.09006 * 110.12079 * 269.78176 * 4 2 1 33 33 H 1.08994 * 109.22033 * 200.51257 * 6 5 4 34 34 H 1.09000 * 109.21737 * 81.17179 * 6 5 4 35 35 H 1.09000 * 108.27796 * 197.02192 * 7 6 5 36 36 H 1.08994 * 108.28093 * 80.13771 * 7 6 5 37 37 H 1.08001 * 119.99747 * 0.02562 * 13 12 9 38 38 H 1.08007 * 119.99548 * 179.97438 * 14 13 12 39 39 H 1.09003 * 109.46938 * 330.00956 * 16 15 14 40 40 H 1.08996 * 109.47532 * 210.00377 * 16 15 14 41 41 H 0.96998 * 119.99255 * 0.02562 * 20 19 17 42 42 H 1.07997 * 119.99769 * 179.72171 * 25 15 14 43 43 H 1.07999 * 120.00129 * 180.20957 * 26 25 15 44 44 H 1.09002 * 109.98105 * 59.74557 * 27 2 1 45 45 H 1.08999 * 110.02400 * 298.52257 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8757 1.0337 0.0000 4 6 2.0183 -0.6783 -1.2777 5 8 3.2507 -0.0935 -1.5796 6 6 4.4118 -0.8498 -1.1538 7 6 4.1697 -1.4919 0.2295 8 7 3.4984 -0.6585 1.1894 9 16 4.3691 0.2825 2.2375 10 8 5.6509 -0.3208 2.3485 11 8 3.5252 0.5254 3.3547 12 6 4.6190 1.8412 1.4547 13 6 3.6990 2.8579 1.6295 14 6 3.8947 4.0805 1.0149 15 6 5.0111 4.2868 0.2263 16 6 5.2249 5.6198 -0.4433 17 6 6.0155 6.5201 0.4709 18 1 6.3319 6.1625 1.4397 19 6 6.3349 7.8002 0.0706 20 7 5.9501 8.2355 -1.1093 21 14 7.3154 8.9157 1.2035 22 1 6.3846 9.6850 2.0679 23 1 8.1275 9.8564 0.3905 24 1 8.2137 8.0928 2.0527 25 6 5.9288 3.2685 0.0475 26 6 5.7350 2.0471 0.6652 27 6 2.0000 -0.6569 1.2334 28 1 -0.3633 -1.0270 -0.0366 29 1 -0.3634 0.4819 0.9077 30 1 -0.3634 0.5452 -0.8712 31 1 1.3115 -0.5034 -2.0889 32 1 2.1419 -1.7483 -1.1105 33 1 5.2721 -0.1833 -1.0944 34 1 4.6160 -1.6342 -1.8826 35 1 5.1345 -1.7828 0.6449 36 1 3.5772 -2.3957 0.0880 37 1 2.8271 2.6970 2.2463 38 1 3.1756 4.8747 1.1513 39 1 4.2592 6.0776 -0.6579 40 1 5.7733 5.4752 -1.3740 41 1 5.4412 7.6560 -1.6976 42 1 6.7987 3.4282 -0.5722 43 1 6.4536 1.2527 0.5283 44 1 1.6295 -1.6813 1.2743 45 1 1.6555 -0.1023 2.1062 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885073085.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:48 Heat of formation + Delta-G solvation = -100.007063 kcal Electronic energy + Delta-G solvation = -28590.848203 eV Core-core repulsion = 24700.061906 eV Total energy + Delta-G solvation = -3890.786297 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.90496 -38.83068 -37.33821 -36.00719 -35.81627 -34.50965 -33.97535 -31.48743 -30.61162 -29.35469 -27.06699 -26.84169 -26.05178 -23.53641 -22.39091 -22.34543 -21.07908 -20.81416 -19.03687 -18.19297 -17.58847 -17.01868 -16.84620 -16.18976 -15.87020 -15.44322 -15.01897 -14.93578 -14.42417 -14.31257 -14.04266 -13.77831 -13.68846 -13.30354 -13.16715 -13.07500 -12.77455 -12.56770 -12.31415 -12.24424 -12.06530 -11.94873 -11.78380 -11.65571 -11.60516 -11.53663 -11.04507 -10.87374 -10.84016 -10.72890 -10.53275 -10.22030 -10.02709 -9.77121 -9.27429 -9.19990 -8.59801 -8.47136 -8.25306 -6.49489 -4.21955 0.38944 1.31512 1.77880 2.80315 3.38952 3.42102 3.58317 3.64350 3.72362 4.05444 4.23026 4.34216 4.45070 4.47443 4.53630 4.71569 4.82933 5.02979 5.04196 5.11146 5.17076 5.19120 5.27663 5.30411 5.32701 5.35050 5.46509 5.59379 5.64791 5.70284 5.73777 5.80211 5.86777 5.90899 5.99860 6.21484 6.28278 6.32672 6.49545 6.77303 6.79377 7.01114 7.13134 7.36130 7.41799 7.95864 8.31297 8.71529 9.49245 10.90019 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016131 B = 0.003354 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.374771 B = 8346.778473 C = 8834.845881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.151 4.151 3 H 0.090 0.910 4 C 0.075 3.925 5 O -0.373 6.373 6 C 0.035 3.965 7 C 0.081 3.919 8 N -0.992 5.992 9 S 2.694 3.306 10 O -0.963 6.963 11 O -0.962 6.962 12 C -0.697 4.697 13 C -0.020 4.020 14 C -0.144 4.144 15 C 0.032 3.968 16 C 0.027 3.973 17 C -0.597 4.597 18 H 0.053 0.947 19 C 0.020 3.980 20 N -0.908 5.908 21 Si 1.073 2.927 22 H -0.286 1.286 23 H -0.283 1.283 24 H -0.287 1.287 25 C -0.143 4.143 26 C -0.019 4.019 27 C 0.128 3.872 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.025 0.975 40 H 0.025 0.975 41 H 0.270 0.730 42 H 0.127 0.873 43 H 0.127 0.873 44 H 0.080 0.920 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.389 -22.446 0.370 24.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.171 4.171 3 H 0.108 0.892 4 C -0.003 4.003 5 O -0.291 6.291 6 C -0.043 4.043 7 C -0.047 4.047 8 N -0.828 5.828 9 S 2.788 3.212 10 O -0.954 6.954 11 O -0.952 6.952 12 C -0.786 4.786 13 C -0.040 4.040 14 C -0.162 4.162 15 C 0.031 3.969 16 C -0.010 4.010 17 C -0.635 4.635 18 H 0.071 0.929 19 C -0.184 4.184 20 N -0.543 5.543 21 Si 0.901 3.099 22 H -0.213 1.213 23 H -0.208 1.208 24 H -0.213 1.213 25 C -0.161 4.161 26 C -0.039 4.039 27 C 0.004 3.996 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.073 0.927 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.099 0.901 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.043 0.957 40 H 0.043 0.957 41 H 0.080 0.920 42 H 0.144 0.856 43 H 0.145 0.855 44 H 0.098 0.902 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.414 -21.058 1.248 22.711 hybrid contribution -0.731 -1.156 -0.607 1.496 sum -9.146 -22.214 0.641 24.031 Atomic orbital electron populations 1.21841 0.94141 1.01968 1.02703 1.21364 0.96747 1.02969 0.96053 0.89173 1.22053 0.86081 0.96451 0.95721 1.87734 1.13243 1.47696 1.80447 1.23895 0.89324 0.96815 0.94267 1.21518 0.99631 0.93791 0.89748 1.57704 1.15658 1.58490 1.50918 1.01750 0.72822 0.73453 0.73193 1.93538 1.39902 1.76212 1.85707 1.93543 1.68043 1.85923 1.47716 1.30296 1.06310 1.21491 1.20523 1.20688 0.96133 0.92439 0.94726 1.21170 0.99099 0.96836 0.99141 1.20824 0.90353 0.95729 0.89948 1.18642 0.97752 0.88458 0.96103 1.21866 1.38175 0.99757 1.03676 0.92892 1.25909 0.97238 0.96824 0.98467 1.70769 1.35423 1.39659 1.08457 0.83472 0.76175 0.75447 0.74796 1.21260 1.20813 1.21319 1.21169 1.00192 0.92895 1.01891 1.20675 0.93756 0.97538 0.91919 1.21214 0.77034 1.02359 0.98955 0.92514 0.92067 0.92007 0.89696 0.92714 0.88980 0.91298 0.88323 0.90109 0.85484 0.85565 0.95711 0.95682 0.91988 0.85552 0.85521 0.90162 0.88021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 8.89 37.16 0.33 -0.67 16 2 C -0.15 -1.33 2.41 -93.46 -0.22 -1.55 16 3 H 0.09 1.02 7.96 -51.93 -0.41 0.61 16 4 C 0.07 0.63 5.89 36.99 0.22 0.85 16 5 O -0.37 -4.26 10.19 -32.14 -0.33 -4.59 16 6 C 0.04 0.32 7.28 37.90 0.28 0.60 16 7 C 0.08 0.70 5.23 -4.75 -0.02 0.67 16 8 N -0.99 -10.52 3.01 -115.81 -0.35 -10.87 16 9 S 2.69 38.51 5.72 -107.50 -0.62 37.89 16 10 O -0.96 -15.45 15.84 -57.17 -0.91 -16.35 16 11 O -0.96 -15.54 15.89 -57.17 -0.91 -16.44 16 12 C -0.70 -11.32 5.97 -39.58 -0.24 -11.56 16 13 C -0.02 -0.34 9.52 -39.59 -0.38 -0.72 16 14 C -0.14 -2.76 9.70 -39.59 -0.38 -3.14 16 15 C 0.03 0.68 5.07 -104.62 -0.53 0.15 16 16 C 0.03 0.68 4.42 -29.03 -0.13 0.55 16 17 C -0.60 -16.63 9.09 -34.44 -0.31 -16.94 16 18 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 19 C 0.02 0.56 5.46 -17.82 -0.10 0.47 16 20 N -0.91 -27.00 13.65 55.43 0.76 -26.24 16 21 Si 1.07 25.04 29.90 -169.99 -5.08 19.96 16 22 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 25 C -0.14 -2.74 9.70 -39.58 -0.38 -3.12 16 26 C -0.02 -0.32 9.43 -39.58 -0.37 -0.70 16 27 C 0.13 1.11 5.33 -4.82 -0.03 1.09 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 31 H 0.09 0.65 7.82 -51.93 -0.41 0.25 16 32 H 0.05 0.36 6.34 -51.93 -0.33 0.03 16 33 H 0.09 0.91 8.05 -51.93 -0.42 0.50 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.10 0.85 6.89 -51.93 -0.36 0.49 16 36 H 0.08 0.50 7.07 -51.93 -0.37 0.13 16 37 H 0.13 1.84 7.62 -52.49 -0.40 1.44 16 38 H 0.13 2.32 8.06 -52.48 -0.42 1.89 16 39 H 0.02 0.63 7.95 -51.93 -0.41 0.22 16 40 H 0.03 0.64 7.95 -51.93 -0.41 0.23 16 41 H 0.27 7.93 7.22 -40.82 -0.29 7.64 16 42 H 0.13 2.32 8.06 -52.49 -0.42 1.89 16 43 H 0.13 1.81 7.62 -52.49 -0.40 1.41 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.10 0.92 6.97 -51.93 -0.36 0.56 16 LS Contribution 372.91 15.07 5.62 5.62 Total: -1.00 -34.07 372.91 -10.82 -44.89 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -6.73 Total: 0.17 kcal Atomic # 6 Polarization: -31.76 SS G_CDS: -2.27 Total: -34.04 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.41 Total: -37.11 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -2.14 Total: -37.39 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -5.08 Total: 19.96 kcal Atomic # 16 Polarization: 38.51 SS G_CDS: -0.62 Total: 37.89 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.07 -10.82 -44.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885073085.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.116 kcal (2) G-P(sol) polarization free energy of solvation -34.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds