Wall clock time and date at job start Tue Mar 31 2020 22:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08995 * 110.64256 * 56.68653 * 3 2 1 5 5 C 1.54328 * 110.71817 * 293.54384 * 3 2 1 6 6 N 1.47027 * 107.26930 * 219.44610 * 5 3 2 7 7 S 1.65602 * 125.64460 * 178.90519 * 6 5 3 8 8 O 1.42100 * 106.39982 * 203.53900 * 7 6 5 9 9 O 1.42097 * 106.40516 * 336.46010 * 7 6 5 10 10 C 1.76199 * 107.21771 * 90.00420 * 7 6 5 11 11 C 1.38238 * 119.99582 * 269.72717 * 10 7 6 12 12 C 1.38239 * 119.99950 * 179.78799 * 11 10 7 13 13 C 1.38243 * 119.99451 * 0.45957 * 12 11 10 14 14 C 1.50707 * 119.99379 * 179.79008 * 13 12 11 15 15 C 1.50693 * 109.46944 * 269.97670 * 14 13 12 16 16 H 1.08001 * 120.00675 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99759 * 180.02562 * 15 14 13 18 18 N 1.31522 * 120.00291 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00184 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46860 * 89.99833 * 19 17 15 21 21 H 1.48496 * 109.47175 * 209.99840 * 19 17 15 22 22 H 1.48495 * 109.47069 * 330.00293 * 19 17 15 23 23 C 1.38231 * 120.00334 * 359.77180 * 13 12 11 24 24 C 1.38230 * 120.00127 * 89.99398 * 10 7 6 25 25 C 1.47420 * 108.70376 * 358.94117 * 6 5 3 26 26 C 1.54913 * 104.83460 * 24.13173 * 25 6 5 27 27 H 1.08993 * 111.00943 * 81.06216 * 26 25 6 28 28 O 1.42895 * 111.00497 * 204.91848 * 26 25 6 29 29 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 30 30 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 31 31 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 33 33 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 34 34 H 1.09004 * 109.88143 * 338.86122 * 5 3 2 35 35 H 1.09001 * 109.88204 * 99.87438 * 5 3 2 36 36 H 1.07995 * 120.00092 * 359.97438 * 11 10 7 37 37 H 1.07994 * 120.00132 * 180.24682 * 12 11 10 38 38 H 1.08996 * 109.47244 * 29.98130 * 14 13 12 39 39 H 1.08997 * 109.46611 * 149.98101 * 14 13 12 40 40 H 0.96994 * 120.00121 * 179.97438 * 18 17 15 41 41 H 1.08001 * 119.99983 * 180.02562 * 23 13 12 42 42 H 1.08001 * 120.00532 * 359.97438 * 24 10 7 43 43 H 1.09004 * 110.36737 * 142.96750 * 25 6 5 44 44 H 1.09001 * 110.37133 * 265.29282 * 25 6 5 45 45 H 0.96699 * 114.00075 * 292.19226 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6399 1.9915 0.8524 5 6 1.6783 2.1494 -1.3233 6 7 2.8295 2.9818 -1.7023 7 16 2.9373 3.9171 -3.0646 8 8 4.3237 4.0879 -3.3253 9 8 2.0322 3.3590 -4.0072 10 6 2.3083 5.5110 -2.6542 11 6 0.9649 5.7888 -2.8250 12 6 0.4705 7.0379 -2.4989 13 6 1.3213 8.0121 -2.0108 14 6 0.7832 9.3753 -1.6598 15 6 0.8589 10.2718 -2.8686 16 1 1.2565 9.8924 -3.7984 17 6 0.4206 11.5765 -2.7878 18 7 0.4861 12.3589 -3.8430 19 14 -0.2678 12.2327 -1.1800 20 1 0.8333 12.8140 -0.3708 21 1 -1.2790 13.2819 -1.4661 22 1 -0.9048 11.1239 -0.4251 23 6 2.6655 7.7357 -1.8445 24 6 3.1591 6.4852 -2.1665 25 6 3.8722 2.8452 -0.6691 26 6 3.5912 1.4763 -0.0007 27 1 3.9995 0.6596 -0.5959 28 8 4.1047 1.4421 1.3324 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3635 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.4855 1.4082 -2.0989 35 1 0.7968 2.7746 -1.1808 36 1 0.3012 5.0291 -3.2104 37 1 -0.5796 7.2537 -2.6286 38 1 -0.2546 9.2847 -1.3390 39 1 1.3771 9.8034 -0.8522 40 1 0.1774 13.2767 -3.7862 41 1 3.3301 8.4967 -1.4628 42 1 4.2093 6.2694 -2.0367 43 1 4.8618 2.8482 -1.1260 44 1 3.7888 3.6488 0.0626 45 1 5.0702 1.4615 1.3826 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885077753.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:56 Heat of formation + Delta-G solvation = -107.360538 kcal Electronic energy + Delta-G solvation = -27344.346834 eV Core-core repulsion = 23453.241666 eV Total energy + Delta-G solvation = -3891.105168 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.65239 -38.90955 -37.25355 -36.09668 -35.85438 -34.26392 -33.70183 -31.75865 -30.66955 -29.35658 -28.39876 -27.98440 -24.20161 -23.50590 -22.46704 -22.20726 -20.76911 -20.54849 -19.17292 -18.05552 -18.01372 -17.22233 -16.92617 -16.28050 -15.50086 -15.14826 -15.09229 -14.64915 -14.43396 -14.30788 -14.26259 -13.88469 -13.70327 -13.21673 -13.18890 -13.01482 -12.80252 -12.68955 -12.61104 -12.21628 -12.09279 -12.06178 -11.96317 -11.91574 -11.79995 -11.32278 -11.05478 -10.95227 -10.94100 -10.81877 -10.54471 -10.44969 -10.26477 -10.11886 -9.56933 -9.26842 -8.71910 -8.66086 -8.46851 -6.19922 -4.21627 0.32149 1.23603 1.70940 2.86592 3.19163 3.27736 3.28518 3.63177 3.76317 3.90712 4.03515 4.12712 4.29345 4.47633 4.50117 4.77025 4.83768 4.97802 5.05353 5.07637 5.13966 5.15931 5.16308 5.18733 5.40212 5.46107 5.49014 5.55337 5.62237 5.66607 5.69831 5.78893 5.80198 5.87991 5.98617 6.11046 6.13434 6.21829 6.42948 6.67827 6.68233 6.79620 7.19910 7.26892 7.28000 7.51992 8.33030 8.83566 9.38212 10.92577 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016690 B = 0.002732 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.282671 B =10246.057238 C =10631.397457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.114 4.114 3 C -0.089 4.089 4 H 0.096 0.904 5 C 0.123 3.877 6 N -1.010 6.010 7 S 2.712 3.288 8 O -0.958 6.958 9 O -0.956 6.956 10 C -0.702 4.702 11 C -0.022 4.022 12 C -0.142 4.142 13 C 0.032 3.968 14 C 0.006 3.994 15 C -0.520 4.520 16 H 0.075 0.925 17 C 0.072 3.928 18 N -0.894 5.894 19 Si 0.879 3.121 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.265 1.265 23 C -0.143 4.143 24 C -0.022 4.022 25 C 0.085 3.915 26 C 0.098 3.902 27 H 0.076 0.924 28 O -0.555 6.555 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.034 0.966 39 H 0.030 0.970 40 H 0.267 0.733 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.524 -24.906 10.357 27.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.152 4.152 3 C -0.109 4.109 4 H 0.114 0.886 5 C -0.002 4.002 6 N -0.849 5.849 7 S 2.806 3.194 8 O -0.949 6.949 9 O -0.947 6.947 10 C -0.791 4.791 11 C -0.042 4.042 12 C -0.161 4.161 13 C 0.031 3.969 14 C -0.031 4.031 15 C -0.558 4.558 16 H 0.093 0.907 17 C -0.130 4.130 18 N -0.532 5.532 19 Si 0.706 3.294 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.189 1.189 23 C -0.162 4.162 24 C -0.041 4.041 25 C -0.041 4.041 26 C 0.037 3.963 27 H 0.094 0.906 28 O -0.360 6.360 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.052 0.948 39 H 0.048 0.952 40 H 0.076 0.924 41 H 0.148 0.852 42 H 0.148 0.852 43 H 0.105 0.895 44 H 0.096 0.904 45 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 4.179 -24.968 9.541 27.054 hybrid contribution -0.087 1.340 0.922 1.628 sum 4.093 -23.628 10.462 26.163 Atomic orbital electron populations 1.21823 0.95305 1.01957 1.02322 1.21536 0.96359 0.94673 1.02608 1.22273 0.93425 0.97284 0.97892 0.88577 1.21851 0.88224 0.93748 0.96342 1.58580 1.25074 1.60457 1.40770 1.01246 0.73429 0.73073 0.71612 1.93552 1.31966 1.86631 1.82747 1.93558 1.66082 1.77727 1.57329 1.30420 1.04074 1.22457 1.22194 1.20770 0.92711 0.97430 0.93240 1.21222 1.00734 0.92860 1.01325 1.20710 0.93024 0.95705 0.87434 1.18985 0.96740 0.89067 0.98300 1.20817 1.43294 0.95188 0.96517 0.90665 1.24988 0.94975 0.96579 0.96480 1.69889 1.46786 1.07307 1.29200 0.86786 0.79433 0.79108 0.84074 1.20022 1.21049 1.18937 1.21222 0.95799 0.96445 1.02714 1.20760 0.98247 0.92734 0.92381 1.22739 0.91623 0.98966 0.90787 1.23013 0.94584 0.95350 0.83358 0.90572 1.86523 1.26509 1.96967 1.25984 0.92462 0.92252 0.92524 0.91586 0.91074 0.90390 0.90858 0.85135 0.85189 0.94786 0.95229 0.92350 0.85201 0.85193 0.89527 0.90393 0.77041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 9.76 37.16 0.36 -0.57 16 2 C -0.11 -0.71 5.32 -26.73 -0.14 -0.85 16 3 C -0.09 -0.67 2.72 -88.78 -0.24 -0.91 16 4 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 5 C 0.12 1.09 5.74 -3.06 -0.02 1.08 16 6 N -1.01 -10.68 3.70 -111.41 -0.41 -11.09 16 7 S 2.71 38.04 5.94 -107.50 -0.64 37.40 16 8 O -0.96 -15.31 16.60 -57.17 -0.95 -16.26 16 9 O -0.96 -15.37 16.86 -57.17 -0.96 -16.33 16 10 C -0.70 -11.05 5.97 -39.58 -0.24 -11.29 16 11 C -0.02 -0.36 9.52 -39.58 -0.38 -0.73 16 12 C -0.14 -2.59 9.70 -39.58 -0.38 -2.97 16 13 C 0.03 0.64 5.07 -104.62 -0.53 0.11 16 14 C 0.01 0.14 4.17 -29.03 -0.12 0.02 16 15 C -0.52 -14.33 9.65 -34.44 -0.33 -14.66 16 16 H 0.08 2.29 7.98 -52.49 -0.42 1.87 16 17 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 18 N -0.89 -26.83 13.96 55.43 0.77 -26.05 16 19 Si 0.88 20.63 27.47 -169.99 -4.67 15.96 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.26 -5.90 6.54 56.52 0.37 -5.53 16 23 C -0.14 -2.60 9.70 -39.58 -0.38 -2.98 16 24 C -0.02 -0.35 9.52 -39.58 -0.38 -0.73 16 25 C 0.08 0.73 6.84 -2.53 -0.02 0.71 16 26 C 0.10 0.70 3.88 -24.58 -0.10 0.60 16 27 H 0.08 0.47 8.05 -51.93 -0.42 0.05 16 28 O -0.55 -3.82 13.47 -35.23 -0.47 -4.29 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.36 7.49 -51.93 -0.39 -0.03 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.38 8.06 -51.93 -0.42 -0.03 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.65 7.76 -51.93 -0.40 0.25 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.13 1.80 7.61 -52.49 -0.40 1.40 16 37 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 38 H 0.03 0.76 7.14 -51.93 -0.37 0.39 16 39 H 0.03 0.65 7.51 -51.93 -0.39 0.26 16 40 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 42 H 0.13 1.79 7.62 -52.49 -0.40 1.39 16 43 H 0.09 0.69 7.78 -51.93 -0.40 0.29 16 44 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.38 1.05 9.12 45.56 0.42 1.47 16 LS Contribution 381.18 15.07 5.74 5.74 Total: -1.00 -34.59 381.18 -10.73 -45.31 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -6.15 Total: 0.85 kcal Atomic # 6 Polarization: -28.26 SS G_CDS: -2.99 Total: -31.25 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.36 Total: -37.14 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -2.39 Total: -36.89 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.67 Total: 15.96 kcal Atomic # 16 Polarization: 38.04 SS G_CDS: -0.64 Total: 37.40 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.59 -10.73 -45.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885077753.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.048 kcal (2) G-P(sol) polarization free energy of solvation -34.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds