Wall clock time and date at job start Tue Mar 31 2020 23:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.48336 * 2 1 4 4 C 1.53098 * 109.47761 * 120.02333 * 2 1 3 5 5 C 1.53177 * 109.21356 * 177.56950 * 4 2 1 6 6 H 1.09005 * 109.54560 * 183.18386 * 5 4 2 7 7 N 1.46504 * 109.54397 * 62.91840 * 5 4 2 8 8 S 1.65599 * 119.99949 * 144.99806 * 7 5 4 9 9 O 1.42107 * 106.39936 * 178.54343 * 8 7 5 10 10 O 1.42101 * 106.40272 * 311.45939 * 8 7 5 11 11 C 1.76199 * 107.21923 * 65.00264 * 8 7 5 12 12 C 1.38232 * 119.99623 * 269.72684 * 11 8 7 13 13 C 1.38234 * 119.99523 * 179.81253 * 12 11 8 14 14 C 1.38238 * 120.00310 * 0.41549 * 13 12 11 15 15 C 1.50697 * 120.00147 * 179.79381 * 14 13 12 16 16 C 1.50699 * 109.47030 * 270.02102 * 15 14 13 17 17 H 1.07994 * 120.00220 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00040 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99910 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00264 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46784 * 90.00142 * 20 18 16 22 22 H 1.48498 * 109.47286 * 210.00617 * 20 18 16 23 23 H 1.48507 * 109.47113 * 330.00653 * 20 18 16 24 24 C 1.38227 * 119.99748 * 359.81122 * 14 13 12 25 25 C 1.38232 * 120.00065 * 89.99471 * 11 8 7 26 26 C 1.53180 * 109.03525 * 303.11207 * 5 4 2 27 27 C 1.53097 * 109.21119 * 56.88485 * 26 5 4 28 28 O 1.42898 * 109.41405 * 302.42599 * 27 26 5 29 29 H 1.08998 * 109.47628 * 299.97778 * 1 2 3 30 30 H 1.09005 * 109.47199 * 59.97515 * 1 2 3 31 31 H 1.09005 * 109.47774 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.52244 * 297.50889 * 4 2 1 33 33 H 1.09004 * 109.52508 * 57.63418 * 4 2 1 34 34 H 0.96998 * 119.99759 * 325.00202 * 7 5 4 35 35 H 1.08002 * 120.00262 * 359.97438 * 12 11 8 36 36 H 1.08004 * 119.99597 * 180.20849 * 13 12 11 37 37 H 1.09005 * 109.47437 * 30.02138 * 15 14 13 38 38 H 1.09005 * 109.47188 * 150.01779 * 15 14 13 39 39 H 0.96996 * 120.00126 * 179.97438 * 19 18 16 40 40 H 1.08004 * 120.00044 * 179.97438 * 24 14 13 41 41 H 1.08003 * 120.00303 * 359.97438 * 25 11 8 42 42 H 1.08992 * 109.47198 * 296.98281 * 26 5 4 43 43 H 1.09005 * 109.58122 * 176.85328 * 26 5 4 44 44 H 1.09007 * 109.47760 * 182.43925 * 27 26 5 45 45 H 1.08997 * 109.48022 * 62.41203 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0404 -0.7222 1.2497 5 6 3.5710 -0.7720 1.2133 6 1 3.9381 -1.3343 2.0719 7 7 4.1067 0.5910 1.2525 8 16 5.5211 0.9019 2.0557 9 8 5.7851 2.2873 1.8818 10 8 5.4014 0.2877 3.3316 11 6 6.8029 0.0407 1.2072 12 6 7.1257 -1.2528 1.5725 13 6 8.1287 -1.9298 0.9042 14 6 8.8147 -1.3102 -0.1236 15 6 9.9113 -2.0466 -0.8491 16 6 11.2268 -1.7967 -0.1576 17 1 11.2651 -1.1673 0.7191 18 6 12.3816 -2.3717 -0.6444 19 7 12.3351 -3.1378 -1.7123 20 14 14.0123 -2.0615 0.2123 21 1 14.2300 -3.0985 1.2527 22 1 15.1131 -2.1197 -0.7828 23 1 13.9902 -0.7196 0.8480 24 6 8.4951 -0.0150 -0.4857 25 6 7.4895 0.6606 0.1800 26 6 4.0178 -1.4598 -0.0804 27 6 3.4309 -0.7092 -1.2787 28 8 2.0068 -0.6743 -1.1662 29 1 -0.3634 0.5135 0.8901 30 1 -0.3634 0.5142 -0.8898 31 1 -0.3635 -1.0277 -0.0005 32 1 1.7145 -0.1843 2.1399 33 1 1.6434 -1.7371 1.2717 34 1 3.6329 1.3113 0.8081 35 1 6.5925 -1.7355 2.3782 36 1 8.3786 -2.9416 1.1873 37 1 9.6959 -3.1151 -0.8450 38 1 9.9684 -1.6914 -1.8781 39 1 13.1475 -3.5420 -2.0550 40 1 9.0314 0.4692 -1.2885 41 1 7.2399 1.6726 -0.1028 42 1 3.6616 -2.4899 -0.0860 43 1 5.1060 -1.4503 -0.1421 44 1 3.7104 -1.2202 -2.2001 45 1 3.8193 0.3091 -1.2955 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885082819.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:10 Heat of formation + Delta-G solvation = -114.682385 kcal Electronic energy + Delta-G solvation = -27880.778011 eV Core-core repulsion = 23989.355344 eV Total energy + Delta-G solvation = -3891.422667 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.06671 -38.86388 -37.20893 -35.83106 -35.70979 -33.72440 -33.09142 -31.60431 -30.99705 -30.62032 -27.92457 -27.46108 -24.53492 -23.75191 -22.60363 -22.38271 -20.98262 -20.57974 -19.29254 -17.95609 -17.42293 -16.59641 -16.48430 -16.39820 -16.13309 -15.41804 -15.13442 -14.83351 -14.56346 -14.40768 -14.26493 -13.85951 -13.48112 -13.19087 -13.13019 -12.89209 -12.73466 -12.48653 -12.32692 -12.10925 -12.08294 -11.98146 -11.77589 -11.73711 -11.52185 -11.46757 -11.38448 -10.99974 -10.94606 -10.61868 -10.54546 -10.51999 -9.91094 -9.77513 -9.65600 -9.56649 -8.63824 -8.56643 -8.42485 -6.19893 -4.25032 0.44511 1.27219 1.74276 2.98294 3.22373 3.29108 3.33302 3.50452 3.70650 4.06411 4.28030 4.34802 4.39698 4.40577 4.56420 4.70831 4.81215 4.92969 5.08759 5.13702 5.17939 5.19377 5.24173 5.27805 5.31265 5.44605 5.55166 5.65959 5.67720 5.71127 5.78126 5.82010 5.85751 5.86759 5.96220 6.19570 6.27821 6.45698 6.71706 6.79371 6.86689 6.98763 7.25160 7.38534 7.55094 7.75136 8.10056 8.79787 9.40169 10.90124 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018927 B = 0.002904 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.006693 B = 9638.501065 C =10460.805678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.084 3.916 3 H 0.057 0.943 4 C -0.153 4.153 5 C 0.149 3.851 6 H 0.100 0.900 7 N -1.116 6.116 8 S 2.696 3.304 9 O -0.966 6.966 10 O -0.964 6.964 11 C -0.703 4.703 12 C -0.024 4.024 13 C -0.144 4.144 14 C 0.028 3.972 15 C 0.039 3.961 16 C -0.518 4.518 17 H 0.059 0.941 18 C 0.061 3.939 19 N -0.891 5.891 20 Si 0.898 3.102 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.272 1.272 24 C -0.145 4.145 25 C -0.021 4.021 26 C -0.180 4.180 27 C 0.064 3.936 28 O -0.379 6.379 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.413 0.587 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.035 0.965 38 H 0.035 0.965 39 H 0.264 0.736 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.473 4.843 2.873 23.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.026 3.974 3 H 0.075 0.925 4 C -0.192 4.192 5 C 0.042 3.958 6 H 0.118 0.882 7 N -0.875 5.875 8 S 2.789 3.211 9 O -0.956 6.956 10 O -0.954 6.954 11 C -0.793 4.793 12 C -0.044 4.044 13 C -0.163 4.163 14 C 0.028 3.972 15 C 0.003 3.997 16 C -0.556 4.556 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.529 5.529 20 Si 0.726 3.274 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.164 4.164 25 C -0.040 4.040 26 C -0.219 4.219 27 C -0.012 4.012 28 O -0.299 6.299 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.248 0.752 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.103 0.897 43 H 0.107 0.893 44 H 0.114 0.886 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.317 5.036 3.471 23.140 hybrid contribution 1.477 0.031 -0.161 1.486 sum -20.840 5.067 3.311 21.701 Atomic orbital electron populations 1.21767 0.92963 1.03038 1.02470 1.22054 0.95141 0.94979 0.85193 0.92532 1.22478 0.94411 1.03080 0.99228 1.20852 0.94579 0.81682 0.98676 0.88223 1.55761 1.41720 1.16130 1.73918 1.01612 0.72627 0.73247 0.73619 1.93571 1.84548 1.30989 1.86523 1.93561 1.86056 1.78243 1.37532 1.30273 1.23326 1.09084 1.16582 1.20760 0.95659 0.91761 0.96203 1.21240 0.96829 1.01020 0.97249 1.21116 0.91411 0.93322 0.91375 1.18538 0.90250 0.95466 0.95485 1.20961 0.90899 1.30837 1.12897 0.92306 1.25001 0.99335 0.94824 0.94957 1.69942 1.28809 1.31774 1.22422 0.86483 0.82786 0.78885 0.79280 1.20433 1.21009 1.19702 1.21245 0.98212 0.95235 1.01685 1.20753 0.93440 0.98220 0.91630 1.22776 1.03020 1.00742 0.95388 1.22512 0.80401 0.99967 0.98362 1.87941 1.21326 1.77871 1.42727 0.91070 0.91812 0.91694 0.89916 0.89467 0.75177 0.85349 0.85360 0.94718 0.94728 0.92603 0.85373 0.85329 0.89671 0.89327 0.88559 0.92902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.56 37.15 0.36 -0.55 16 2 C 0.08 0.64 3.07 -26.68 -0.08 0.56 16 3 H 0.06 0.40 6.71 -51.93 -0.35 0.05 16 4 C -0.15 -1.10 5.10 -26.59 -0.14 -1.23 16 5 C 0.15 1.30 3.15 -67.74 -0.21 1.08 16 6 H 0.10 0.87 7.51 -51.93 -0.39 0.48 16 7 N -1.12 -10.48 4.87 -4.73 -0.02 -10.50 16 8 S 2.70 35.49 5.72 -107.50 -0.61 34.87 16 9 O -0.97 -15.09 17.28 -57.17 -0.99 -16.08 16 10 O -0.96 -14.92 16.62 -57.17 -0.95 -15.87 16 11 C -0.70 -10.36 5.02 -39.59 -0.20 -10.56 16 12 C -0.02 -0.37 8.72 -39.59 -0.35 -0.71 16 13 C -0.14 -2.54 9.70 -39.58 -0.38 -2.92 16 14 C 0.03 0.56 5.07 -104.63 -0.53 0.03 16 15 C 0.04 0.94 5.10 -29.04 -0.15 0.79 16 16 C -0.52 -13.85 9.09 -34.44 -0.31 -14.16 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -25.28 13.29 55.43 0.74 -24.55 16 20 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 C -0.14 -2.58 9.70 -39.59 -0.38 -2.96 16 25 C -0.02 -0.32 9.52 -39.58 -0.38 -0.70 16 26 C -0.18 -1.62 5.83 -26.59 -0.15 -1.78 16 27 C 0.06 0.58 6.68 37.21 0.25 0.83 16 28 O -0.38 -3.69 10.41 -35.23 -0.37 -4.06 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.41 3.15 7.09 -34.47 -0.24 2.91 16 35 H 0.13 1.67 7.61 -52.49 -0.40 1.27 16 36 H 0.13 2.16 8.06 -52.48 -0.42 1.73 16 37 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 38 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.13 2.19 8.06 -52.48 -0.42 1.76 16 41 H 0.13 1.73 7.62 -52.48 -0.40 1.33 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 0.91 6.28 -51.93 -0.33 0.58 16 44 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.05 0.46 7.63 -51.93 -0.40 0.06 16 LS Contribution 375.62 15.07 5.66 5.66 Total: -1.00 -32.54 375.62 -11.02 -43.56 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -6.69 Total: 1.74 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: -2.76 Total: -30.71 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.71 Total: -35.05 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -2.30 Total: -36.01 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 35.49 SS G_CDS: -0.61 Total: 34.87 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.54 -11.02 -43.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885082819.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.124 kcal (2) G-P(sol) polarization free energy of solvation -32.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds