Wall clock time and date at job start Tue Mar 31 2020 23:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.48336 * 2 1 4 4 C 1.53098 * 109.47761 * 120.02333 * 2 1 3 5 5 C 1.53177 * 109.21356 * 177.56950 * 4 2 1 6 6 H 1.09005 * 109.54560 * 183.18386 * 5 4 2 7 7 N 1.46504 * 109.54397 * 62.91840 * 5 4 2 8 8 S 1.65599 * 119.99949 * 144.99806 * 7 5 4 9 9 O 1.42107 * 106.39936 * 178.54343 * 8 7 5 10 10 O 1.42101 * 106.40272 * 311.45939 * 8 7 5 11 11 C 1.76199 * 107.21923 * 65.00264 * 8 7 5 12 12 C 1.38232 * 119.99623 * 269.72684 * 11 8 7 13 13 C 1.38234 * 119.99523 * 179.81253 * 12 11 8 14 14 C 1.38238 * 120.00310 * 0.41549 * 13 12 11 15 15 C 1.50697 * 120.00147 * 179.79381 * 14 13 12 16 16 C 1.50699 * 109.47030 * 270.02102 * 15 14 13 17 17 H 1.07994 * 120.00220 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00040 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99910 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00264 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46784 * 90.00142 * 20 18 16 22 22 H 1.48498 * 109.47286 * 210.00617 * 20 18 16 23 23 H 1.48507 * 109.47113 * 330.00653 * 20 18 16 24 24 C 1.38227 * 119.99748 * 359.81122 * 14 13 12 25 25 C 1.38232 * 120.00065 * 89.99471 * 11 8 7 26 26 C 1.53180 * 109.03525 * 303.11207 * 5 4 2 27 27 C 1.53097 * 109.21119 * 56.88485 * 26 5 4 28 28 O 1.42898 * 109.41405 * 302.42599 * 27 26 5 29 29 H 1.08998 * 109.47628 * 299.97778 * 1 2 3 30 30 H 1.09005 * 109.47199 * 59.97515 * 1 2 3 31 31 H 1.09005 * 109.47774 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.52244 * 297.50889 * 4 2 1 33 33 H 1.09004 * 109.52508 * 57.63418 * 4 2 1 34 34 H 0.96998 * 119.99759 * 325.00202 * 7 5 4 35 35 H 1.08002 * 120.00262 * 359.97438 * 12 11 8 36 36 H 1.08004 * 119.99597 * 180.20849 * 13 12 11 37 37 H 1.09005 * 109.47437 * 30.02138 * 15 14 13 38 38 H 1.09005 * 109.47188 * 150.01779 * 15 14 13 39 39 H 0.96996 * 120.00126 * 179.97438 * 19 18 16 40 40 H 1.08004 * 120.00044 * 179.97438 * 24 14 13 41 41 H 1.08003 * 120.00303 * 359.97438 * 25 11 8 42 42 H 1.08992 * 109.47198 * 296.98281 * 26 5 4 43 43 H 1.09005 * 109.58122 * 176.85328 * 26 5 4 44 44 H 1.09007 * 109.47760 * 182.43925 * 27 26 5 45 45 H 1.08997 * 109.48022 * 62.41203 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0404 -0.7222 1.2497 5 6 3.5710 -0.7720 1.2133 6 1 3.9381 -1.3343 2.0719 7 7 4.1067 0.5910 1.2525 8 16 5.5211 0.9019 2.0557 9 8 5.7851 2.2873 1.8818 10 8 5.4014 0.2877 3.3316 11 6 6.8029 0.0407 1.2072 12 6 7.1257 -1.2528 1.5725 13 6 8.1287 -1.9298 0.9042 14 6 8.8147 -1.3102 -0.1236 15 6 9.9113 -2.0466 -0.8491 16 6 11.2268 -1.7967 -0.1576 17 1 11.2651 -1.1673 0.7191 18 6 12.3816 -2.3717 -0.6444 19 7 12.3351 -3.1378 -1.7123 20 14 14.0123 -2.0615 0.2123 21 1 14.2300 -3.0985 1.2527 22 1 15.1131 -2.1197 -0.7828 23 1 13.9902 -0.7196 0.8480 24 6 8.4951 -0.0150 -0.4857 25 6 7.4895 0.6606 0.1800 26 6 4.0178 -1.4598 -0.0804 27 6 3.4309 -0.7092 -1.2787 28 8 2.0068 -0.6743 -1.1662 29 1 -0.3634 0.5135 0.8901 30 1 -0.3634 0.5142 -0.8898 31 1 -0.3635 -1.0277 -0.0005 32 1 1.7145 -0.1843 2.1399 33 1 1.6434 -1.7371 1.2717 34 1 3.6329 1.3113 0.8081 35 1 6.5925 -1.7355 2.3782 36 1 8.3786 -2.9416 1.1873 37 1 9.6959 -3.1151 -0.8450 38 1 9.9684 -1.6914 -1.8781 39 1 13.1475 -3.5420 -2.0550 40 1 9.0314 0.4692 -1.2885 41 1 7.2399 1.6726 -0.1028 42 1 3.6616 -2.4899 -0.0860 43 1 5.1060 -1.4503 -0.1421 44 1 3.7104 -1.2202 -2.2001 45 1 3.8193 0.3091 -1.2955 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885082819.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:09 Heat of formation + Delta-G solvation = -136.142096 kcal Electronic energy + Delta-G solvation = -27881.708574 eV Core-core repulsion = 23989.355344 eV Total energy + Delta-G solvation = -3892.353230 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.74657 -40.22083 -38.36993 -36.99582 -36.47471 -35.59861 -33.69010 -33.30304 -31.97094 -31.74618 -29.25310 -28.48362 -25.60898 -25.18562 -23.71218 -23.19946 -22.47495 -21.39487 -20.26746 -19.02069 -18.62483 -18.46502 -17.33778 -17.18862 -16.88801 -16.77768 -16.51394 -15.98580 -15.75494 -15.53770 -15.24968 -14.96070 -14.63536 -14.44990 -14.29800 -13.97549 -13.70198 -13.42912 -13.41340 -13.34749 -13.24179 -13.15978 -13.03005 -12.77827 -12.68317 -12.65397 -12.58519 -12.21077 -12.05010 -12.03202 -12.01585 -11.68075 -11.42526 -11.23252 -10.65940 -10.63967 -10.27360 -9.94753 -9.92440 -8.27767 -6.40314 -0.64587 -0.05926 0.41070 1.37575 1.38087 1.49274 1.97277 2.34052 2.55830 2.81959 2.89409 3.05059 3.29171 3.68325 3.77559 3.87256 3.90974 3.98364 4.04559 4.16649 4.21700 4.27367 4.42555 4.48348 4.49025 4.61996 4.71458 4.79818 4.82245 4.85072 4.91791 4.92610 5.07304 5.11416 5.14800 5.18854 5.25662 5.26419 5.29068 5.34625 5.37317 5.66801 5.87600 5.92790 6.00481 6.09713 6.35821 6.71802 7.28859 8.82252 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018927 B = 0.002904 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.006693 B = 9638.501065 C =10460.805678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.076 3.924 3 H 0.064 0.936 4 C -0.148 4.148 5 C 0.144 3.856 6 H 0.104 0.896 7 N -1.100 6.100 8 S 2.724 3.276 9 O -0.986 6.986 10 O -0.981 6.981 11 C -0.698 4.698 12 C -0.016 4.016 13 C -0.152 4.152 14 C -0.001 4.001 15 C 0.048 3.952 16 C -0.533 4.533 17 H 0.053 0.947 18 C 0.010 3.990 19 N -0.925 5.925 20 Si 0.962 3.038 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.268 1.268 24 C -0.154 4.154 25 C -0.016 4.016 26 C -0.179 4.179 27 C 0.061 3.939 28 O -0.395 6.395 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.425 0.575 35 H 0.155 0.845 36 H 0.129 0.871 37 H 0.013 0.987 38 H 0.012 0.988 39 H 0.267 0.733 40 H 0.127 0.873 41 H 0.153 0.847 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.094 0.906 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.110 5.884 4.451 25.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.018 3.982 3 H 0.081 0.919 4 C -0.187 4.187 5 C 0.037 3.963 6 H 0.122 0.878 7 N -0.862 5.862 8 S 2.815 3.185 9 O -0.976 6.976 10 O -0.971 6.971 11 C -0.785 4.785 12 C -0.035 4.035 13 C -0.171 4.171 14 C -0.001 4.001 15 C 0.011 3.989 16 C -0.571 4.571 17 H 0.072 0.928 18 C -0.189 4.189 19 N -0.565 5.565 20 Si 0.787 3.213 21 H -0.197 1.197 22 H -0.204 1.204 23 H -0.193 1.193 24 C -0.173 4.173 25 C -0.036 4.036 26 C -0.218 4.218 27 C -0.015 4.015 28 O -0.315 6.315 29 H 0.107 0.893 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.262 0.738 35 H 0.173 0.827 36 H 0.147 0.853 37 H 0.032 0.968 38 H 0.030 0.970 39 H 0.076 0.924 40 H 0.145 0.855 41 H 0.171 0.829 42 H 0.109 0.891 43 H 0.094 0.906 44 H 0.112 0.888 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.947 6.078 5.039 25.215 hybrid contribution 1.821 -0.269 -0.652 1.952 sum -22.126 5.809 4.387 23.293 Atomic orbital electron populations 1.21784 0.91945 1.03155 1.03189 1.22272 0.96027 0.95197 0.84692 0.91855 1.22477 0.92868 1.03807 0.99554 1.21036 0.95805 0.80877 0.98565 0.87790 1.55416 1.40096 1.17112 1.73602 1.00795 0.72538 0.72132 0.73070 1.93544 1.85140 1.32177 1.86775 1.93543 1.86356 1.78484 1.38678 1.30709 1.23399 1.08808 1.15572 1.20989 0.94589 0.91833 0.96108 1.21272 0.97445 1.01315 0.97036 1.20781 0.91926 0.94363 0.93031 1.18256 0.91233 0.94651 0.94714 1.21290 0.92499 1.30486 1.12797 0.92835 1.25849 1.02906 0.94572 0.95590 1.70050 1.29833 1.32786 1.23800 0.85483 0.78566 0.78903 0.78357 1.19650 1.20373 1.19275 1.21269 0.99145 0.94682 1.02203 1.20968 0.92322 0.99058 0.91205 1.22748 1.02118 1.01269 0.95659 1.22529 0.80457 1.00157 0.98375 1.87931 1.21379 1.78294 1.43856 0.89314 0.92166 0.91887 0.88513 0.88697 0.73766 0.82706 0.85326 0.96830 0.96962 0.92392 0.85522 0.82947 0.89064 0.90643 0.88795 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.56 71.98 0.69 -0.75 16 2 C 0.08 0.97 3.07 30.63 0.09 1.06 16 3 H 0.06 0.71 6.71 -2.39 -0.02 0.69 16 4 C -0.15 -1.68 5.10 30.69 0.16 -1.53 16 5 C 0.14 2.11 3.15 45.11 0.14 2.26 16 6 H 0.10 1.50 7.51 -2.38 -0.02 1.48 16 7 N -1.10 -17.56 4.87 -168.88 -0.82 -18.38 16 8 S 2.72 64.61 5.72 -56.49 -0.32 64.29 16 9 O -0.99 -28.25 17.28 -128.00 -2.21 -30.47 16 10 O -0.98 -27.57 16.62 -128.00 -2.13 -29.70 16 11 C -0.70 -19.25 5.02 22.27 0.11 -19.14 16 12 C -0.02 -0.46 8.72 22.27 0.19 -0.27 16 13 C -0.15 -5.35 9.70 22.27 0.22 -5.13 16 14 C 0.00 -0.03 5.07 -19.87 -0.10 -0.13 16 15 C 0.05 2.43 5.10 29.10 0.15 2.58 16 16 C -0.53 -29.35 9.09 25.60 0.23 -29.12 16 17 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 18 C 0.01 0.55 5.46 84.65 0.46 1.01 16 19 N -0.93 -53.91 13.29 21.45 0.28 -53.62 16 20 Si 0.96 43.37 29.54 68.60 2.03 45.40 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 C -0.15 -5.53 9.70 22.27 0.22 -5.31 16 25 C -0.02 -0.49 9.52 22.27 0.21 -0.27 16 26 C -0.18 -2.92 5.83 30.69 0.18 -2.74 16 27 C 0.06 1.03 6.68 72.01 0.48 1.52 16 28 O -0.39 -7.02 10.41 -148.98 -1.55 -8.57 16 29 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.42 5.18 7.09 -96.75 -0.69 4.50 16 35 H 0.16 3.62 7.61 -2.91 -0.02 3.60 16 36 H 0.13 4.41 8.06 -2.91 -0.02 4.38 16 37 H 0.01 0.71 8.09 -2.38 -0.02 0.69 16 38 H 0.01 0.65 8.09 -2.38 -0.02 0.63 16 39 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 40 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 41 H 0.15 3.76 7.62 -2.91 -0.02 3.74 16 42 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.07 1.44 6.28 -2.38 -0.01 1.43 16 44 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 45 H 0.06 0.88 7.63 -2.39 -0.02 0.86 16 Total: -1.00 -70.01 375.62 -0.98 -70.99 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.31 Total: 16.04 kcal Atomic # 6 Polarization: -59.41 SS G_CDS: 3.43 Total: -55.97 kcal Atomic # 7 Polarization: -71.47 SS G_CDS: -0.54 Total: -72.01 kcal Atomic # 8 Polarization: -62.85 SS G_CDS: -5.89 Total: -68.74 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: 64.61 SS G_CDS: -0.32 Total: 64.29 kcal Total: -70.01 -0.98 -70.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885082819.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.148 kcal (2) G-P(sol) polarization free energy of solvation -70.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds