Wall clock time and date at job start Tue Mar 31 2020 23:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.48353 * 2 1 4 4 C 1.53099 * 109.47751 * 120.02129 * 2 1 3 5 5 C 1.53179 * 109.16231 * 177.60738 * 4 2 1 6 6 H 1.08993 * 109.54582 * 62.97164 * 5 4 2 7 7 N 1.46496 * 109.54414 * 183.15281 * 5 4 2 8 8 S 1.65601 * 120.00024 * 214.99811 * 7 5 4 9 9 O 1.42100 * 106.39998 * 311.45955 * 8 7 5 10 10 O 1.42101 * 106.40323 * 178.53828 * 8 7 5 11 11 C 1.76198 * 107.21773 * 64.99593 * 8 7 5 12 12 C 1.38237 * 119.99838 * 90.00173 * 11 8 7 13 13 C 1.38235 * 120.00204 * 179.97438 * 12 11 8 14 14 C 1.38238 * 119.99663 * 0.02562 * 13 12 11 15 15 C 1.50706 * 120.00103 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47294 * 89.99178 * 15 14 13 17 17 H 1.08005 * 119.99819 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00046 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00192 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99979 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.47261 * 60.00310 * 20 18 16 23 23 H 1.48500 * 109.47454 * 300.00304 * 20 18 16 24 24 C 1.38234 * 120.00173 * 0.24460 * 14 13 12 25 25 C 1.38234 * 120.00132 * 269.97818 * 11 8 7 26 26 C 1.53186 * 109.03260 * 303.01736 * 5 4 2 27 27 C 1.53083 * 109.16315 * 56.98153 * 26 5 4 28 28 O 1.42902 * 109.41839 * 302.38914 * 27 26 5 29 29 H 1.08992 * 109.47437 * 299.97988 * 1 2 3 30 30 H 1.09001 * 109.46841 * 59.98307 * 1 2 3 31 31 H 1.09001 * 109.47127 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.52072 * 57.69906 * 4 2 1 33 33 H 1.08998 * 109.51916 * 297.50761 * 4 2 1 34 34 H 0.97005 * 120.00151 * 34.99182 * 7 5 4 35 35 H 1.08001 * 120.00254 * 359.97438 * 12 11 8 36 36 H 1.07995 * 120.00679 * 179.97438 * 13 12 11 37 37 H 1.09001 * 109.46953 * 329.99736 * 15 14 13 38 38 H 1.08993 * 109.46894 * 209.99366 * 15 14 13 39 39 H 0.97001 * 119.99934 * 359.97438 * 19 18 16 40 40 H 1.08005 * 120.00155 * 179.72911 * 24 14 13 41 41 H 1.07996 * 120.00229 * 0.02562 * 25 11 8 42 42 H 1.08997 * 109.51515 * 176.89018 * 26 5 4 43 43 H 1.08997 * 109.52066 * 297.07205 * 26 5 4 44 44 H 1.09002 * 109.47939 * 182.40436 * 27 26 5 45 45 H 1.09004 * 109.49251 * 62.38115 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0275 0.0000 4 6 2.0405 -0.7222 1.2497 5 6 3.5711 -0.7704 1.2126 6 1 3.9687 0.2439 1.2428 7 7 4.0657 -1.5254 2.3665 8 16 5.4827 -1.0823 3.1001 9 8 6.4379 -0.9171 2.0611 10 8 5.6665 -1.9753 4.1901 11 6 5.2298 0.5140 3.8018 12 6 4.7612 0.6334 5.0968 13 6 4.5633 1.8858 5.6475 14 6 4.8336 3.0188 4.9030 15 6 4.6173 4.3842 5.5032 16 6 5.8811 4.8383 6.1870 17 1 6.7538 4.2020 6.1866 18 6 5.9236 6.0664 6.8121 19 7 4.8611 6.8414 6.8121 20 14 7.4904 6.6296 7.6591 21 1 7.2772 7.9750 8.2505 22 1 8.5937 6.6936 6.6672 23 1 7.8456 5.6678 8.7333 24 6 5.2969 2.8994 3.6061 25 6 5.5006 1.6470 3.0575 26 6 4.0179 -1.4597 -0.0804 27 6 3.4310 -0.7092 -1.2786 28 8 2.0068 -0.6743 -1.1662 29 1 -0.3634 0.5135 0.8901 30 1 -0.3633 0.5141 -0.8898 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6444 -1.7374 1.2711 33 1 1.7146 -0.1841 2.1399 34 1 3.5632 -2.2847 2.7009 35 1 4.5496 -0.2517 5.6783 36 1 4.1968 1.9792 6.6591 37 1 3.8073 4.3369 6.2310 38 1 4.3568 5.0903 4.7149 39 1 4.0476 6.5491 6.3719 40 1 5.5039 3.7846 3.0230 41 1 5.8667 1.5537 2.0458 42 1 5.1061 -1.4492 -0.1414 43 1 3.6618 -2.4899 -0.0858 44 1 3.7105 -1.2201 -2.2000 45 1 3.8194 0.3092 -1.2957 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885082821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:14 Heat of formation + Delta-G solvation = -121.024670 kcal Electronic energy + Delta-G solvation = -27562.012962 eV Core-core repulsion = 23670.315273 eV Total energy + Delta-G solvation = -3891.697689 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.93477 -38.95565 -37.24665 -36.00080 -35.84030 -34.05315 -33.11860 -31.58022 -31.18998 -30.71964 -27.83877 -27.15126 -24.24917 -23.59981 -22.58216 -22.42342 -21.24120 -20.86217 -19.51485 -17.96151 -17.48654 -16.97827 -16.70237 -16.62141 -15.88519 -15.31673 -15.04981 -14.98718 -14.53430 -14.42873 -14.16531 -13.93746 -13.77401 -13.33192 -13.25196 -12.89594 -12.66461 -12.44083 -12.31323 -12.19008 -12.07859 -12.02498 -11.90939 -11.79562 -11.68469 -11.55205 -11.42843 -10.93360 -10.91366 -10.64543 -10.60469 -10.28884 -10.08117 -9.89317 -9.70749 -9.30860 -8.72471 -8.52936 -8.36014 -6.55003 -4.28050 0.39426 1.18885 1.65224 2.92170 3.36553 3.37165 3.44841 3.56281 3.65021 3.98519 4.24156 4.33745 4.41893 4.42929 4.52272 4.67210 4.76925 4.83910 5.02995 5.06067 5.10645 5.14475 5.22466 5.29789 5.34336 5.35548 5.47429 5.54519 5.63319 5.65977 5.69224 5.76036 5.80503 5.85386 5.96398 6.09661 6.17757 6.36492 6.66418 6.68244 6.72375 6.91966 6.92296 7.24509 7.31967 7.88793 8.24757 8.65468 9.43124 10.84441 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014234 B = 0.002967 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.643776 B = 9435.018186 C =10517.599555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.087 3.913 3 H 0.063 0.937 4 C -0.156 4.156 5 C 0.154 3.846 6 H 0.088 0.912 7 N -1.114 6.114 8 S 2.696 3.304 9 O -0.961 6.961 10 O -0.965 6.965 11 C -0.703 4.703 12 C -0.020 4.020 13 C -0.145 4.145 14 C 0.032 3.968 15 C 0.027 3.973 16 C -0.598 4.598 17 H 0.053 0.947 18 C 0.021 3.979 19 N -0.906 5.906 20 Si 1.071 2.929 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.286 1.286 24 C -0.145 4.145 25 C -0.026 4.026 26 C -0.175 4.175 27 C 0.063 3.937 28 O -0.380 6.380 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.417 0.583 35 H 0.131 0.869 36 H 0.128 0.872 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.269 0.731 40 H 0.128 0.872 41 H 0.130 0.870 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.098 0.902 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.410 -16.386 -14.033 22.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.028 3.972 3 H 0.081 0.919 4 C -0.195 4.195 5 C 0.046 3.954 6 H 0.106 0.894 7 N -0.871 5.871 8 S 2.789 3.211 9 O -0.951 6.951 10 O -0.955 6.955 11 C -0.793 4.793 12 C -0.039 4.039 13 C -0.164 4.164 14 C 0.031 3.969 15 C -0.010 4.010 16 C -0.636 4.636 17 H 0.071 0.929 18 C -0.184 4.184 19 N -0.541 5.541 20 Si 0.898 3.102 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.212 1.212 24 C -0.164 4.164 25 C -0.045 4.045 26 C -0.215 4.215 27 C -0.014 4.014 28 O -0.299 6.299 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.251 0.749 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.080 0.920 40 H 0.146 0.854 41 H 0.148 0.852 42 H 0.109 0.891 43 H 0.097 0.903 44 H 0.116 0.884 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.989 -15.573 -13.335 21.359 hybrid contribution -0.974 -0.825 -0.211 1.294 sum -6.964 -16.398 -13.546 22.380 Atomic orbital electron populations 1.21762 0.92709 1.02985 1.02734 1.22094 0.95411 0.95232 0.84441 0.91906 1.22582 0.94448 1.02960 0.99540 1.20774 0.94833 0.94972 0.84777 0.89449 1.55694 1.45226 1.43234 1.42960 1.01663 0.72596 0.73764 0.73118 1.93561 1.57797 1.86773 1.57009 1.93572 1.84452 1.63396 1.54110 1.30354 1.21767 1.20601 1.06553 1.20771 0.92449 0.98379 0.92338 1.21227 1.02904 0.91712 1.00522 1.20875 0.86406 0.97540 0.92037 1.18654 0.98596 0.87774 0.95973 1.21828 0.97555 1.05544 1.38705 0.92901 1.25922 1.03488 0.93093 0.95892 1.70807 1.02901 1.38767 1.41635 0.83504 0.73965 0.76400 0.76304 1.20559 1.21221 1.21232 1.21219 1.01903 0.97055 0.96179 1.20780 0.93430 0.91782 0.98517 1.22787 1.03002 1.01161 0.94537 1.22569 0.80721 0.99959 0.98197 1.87935 1.21098 1.77927 1.42989 0.90858 0.91659 0.91783 0.90162 0.89795 0.74910 0.85124 0.85367 0.95642 0.95644 0.92035 0.85383 0.85223 0.89089 0.90327 0.88352 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.57 37.16 0.36 -0.64 16 2 C 0.09 0.71 3.26 -26.68 -0.09 0.62 16 3 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 4 C -0.16 -1.21 4.95 -26.59 -0.13 -1.35 16 5 C 0.15 1.38 2.75 -67.74 -0.19 1.19 16 6 H 0.09 0.81 7.24 -51.93 -0.38 0.43 16 7 N -1.11 -10.50 5.48 -4.73 -0.03 -10.53 16 8 S 2.70 35.83 5.65 -107.50 -0.61 35.22 16 9 O -0.96 -14.71 16.66 -57.17 -0.95 -15.67 16 10 O -0.96 -15.20 17.28 -57.17 -0.99 -16.19 16 11 C -0.70 -10.69 5.82 -39.58 -0.23 -10.92 16 12 C -0.02 -0.32 9.52 -39.58 -0.38 -0.69 16 13 C -0.14 -2.65 9.70 -39.58 -0.38 -3.04 16 14 C 0.03 0.65 5.07 -104.62 -0.53 0.12 16 15 C 0.03 0.64 4.42 -29.03 -0.13 0.51 16 16 C -0.60 -16.31 9.09 -34.44 -0.31 -16.63 16 17 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 18 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 19 N -0.91 -26.46 13.65 55.43 0.76 -25.70 16 20 Si 1.07 24.56 29.90 -169.99 -5.08 19.48 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 24 C -0.14 -2.62 9.70 -39.58 -0.38 -3.00 16 25 C -0.03 -0.40 8.91 -39.58 -0.35 -0.75 16 26 C -0.18 -1.49 5.75 -26.59 -0.15 -1.65 16 27 C 0.06 0.50 6.84 37.20 0.25 0.76 16 28 O -0.38 -3.57 10.41 -35.23 -0.37 -3.94 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.42 3.02 8.84 -34.47 -0.30 2.71 16 35 H 0.13 1.79 7.62 -52.49 -0.40 1.39 16 36 H 0.13 2.24 8.06 -52.49 -0.42 1.82 16 37 H 0.03 0.63 7.95 -51.93 -0.41 0.21 16 38 H 0.03 0.62 7.95 -51.93 -0.41 0.21 16 39 H 0.27 7.74 7.22 -40.82 -0.29 7.45 16 40 H 0.13 2.21 8.06 -52.48 -0.42 1.78 16 41 H 0.13 1.71 7.62 -52.49 -0.40 1.31 16 42 H 0.09 0.84 7.75 -51.93 -0.40 0.44 16 43 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 380.48 15.07 5.73 5.73 Total: -1.00 -33.54 380.48 -11.13 -44.68 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -6.86 Total: 1.91 kcal Atomic # 6 Polarization: -32.25 SS G_CDS: -2.74 Total: -34.99 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.73 Total: -36.24 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -2.31 Total: -35.80 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -5.08 Total: 19.48 kcal Atomic # 16 Polarization: 35.83 SS G_CDS: -0.61 Total: 35.22 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.54 -11.13 -44.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885082821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.348 kcal (2) G-P(sol) polarization free energy of solvation -33.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds