Wall clock time and date at job start Tue Mar 31 2020 23:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.48117 * 2 1 4 4 C 1.53102 * 109.49316 * 240.06252 * 2 1 3 5 5 C 1.53180 * 109.15766 * 182.49333 * 4 2 1 6 6 H 1.09000 * 109.54329 * 296.93210 * 5 4 2 7 7 N 1.46502 * 109.54447 * 176.75964 * 5 4 2 8 8 S 1.65595 * 120.00239 * 145.17339 * 7 5 4 9 9 O 1.42099 * 106.40087 * 311.46289 * 8 7 5 10 10 O 1.42101 * 106.40448 * 178.53664 * 8 7 5 11 11 C 1.76208 * 107.21740 * 64.99791 * 8 7 5 12 12 C 1.38236 * 119.99728 * 89.99940 * 11 8 7 13 13 C 1.38240 * 120.00058 * 179.97438 * 12 11 8 14 14 C 1.38232 * 119.99631 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99860 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47064 * 89.99959 * 15 14 13 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47094 * 90.00289 * 20 18 16 22 22 H 1.48505 * 109.47195 * 210.00171 * 20 18 16 23 23 H 1.48493 * 109.47449 * 330.00136 * 20 18 16 24 24 C 1.38234 * 120.00312 * 0.27932 * 14 13 12 25 25 C 1.38233 * 120.00113 * 270.02672 * 11 8 7 26 26 C 1.53169 * 109.10986 * 56.84481 * 5 4 2 27 27 C 1.53094 * 109.16621 * 303.06530 * 26 5 4 28 28 O 1.42900 * 109.41526 * 57.61025 * 27 26 5 29 29 H 1.08998 * 109.47581 * 299.97418 * 1 2 3 30 30 H 1.09002 * 109.47127 * 59.98018 * 1 2 3 31 31 H 1.09003 * 109.46985 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.60128 * 62.54271 * 4 2 1 33 33 H 1.09007 * 109.45352 * 302.35077 * 4 2 1 34 34 H 0.97001 * 119.99353 * 325.17679 * 7 5 4 35 35 H 1.08002 * 120.00221 * 0.02562 * 12 11 8 36 36 H 1.07996 * 119.99763 * 180.02562 * 13 12 11 37 37 H 1.09002 * 109.47152 * 330.00052 * 15 14 13 38 38 H 1.09001 * 109.46980 * 210.00152 * 15 14 13 39 39 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 40 40 H 1.07998 * 120.00015 * 179.72855 * 24 14 13 41 41 H 1.07996 * 119.99910 * 0.02562 * 25 11 8 42 42 H 1.09008 * 109.52479 * 62.97245 * 26 5 4 43 43 H 1.09006 * 109.52340 * 183.15823 * 26 5 4 44 44 H 1.09001 * 109.48267 * 177.59150 * 27 26 5 45 45 H 1.08994 * 109.48282 * 297.61546 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0409 -0.7203 -1.2507 5 6 3.5714 -0.7706 -1.2119 6 1 3.9704 0.2433 -1.2413 7 7 4.0663 -1.5256 -2.3657 8 16 5.4868 -1.0866 -3.0949 9 8 5.4120 0.3164 -3.3073 10 8 5.7052 -2.0209 -4.1431 11 6 6.7764 -1.3441 -1.9222 12 6 7.4227 -2.5647 -1.8624 13 6 8.4348 -2.7666 -0.9427 14 6 8.8010 -1.7478 -0.0832 15 6 9.9047 -1.9676 0.9190 16 6 11.2257 -1.5828 0.3041 17 1 11.2622 -1.2153 -0.7108 18 6 12.3874 -1.6988 1.0375 19 7 12.3428 -2.1458 2.2735 20 14 14.0246 -1.2211 0.2754 21 1 14.2940 0.2149 0.5412 22 1 15.1069 -2.0461 0.8700 23 1 13.9745 -1.4523 -1.1905 24 6 8.1512 -0.5290 -0.1394 25 6 7.1415 -0.3259 -1.0615 26 6 4.0178 -1.4596 0.0811 27 6 3.4307 -0.7090 1.2793 28 8 2.0066 -0.6741 1.1665 29 1 -0.3634 0.5134 0.8902 30 1 -0.3633 0.5141 -0.8898 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7166 -0.1816 -2.1410 33 1 1.6435 -1.7351 -1.2730 34 1 3.5618 -2.2825 -2.7025 35 1 7.1375 -3.3602 -2.5348 36 1 8.9400 -3.7200 -0.8964 37 1 9.9304 -3.0187 1.2066 38 1 9.7221 -1.3540 1.8012 39 1 13.1602 -2.2278 2.7893 40 1 8.4343 0.2655 0.5351 41 1 6.6360 0.6274 -1.1077 42 1 3.6617 -2.4899 0.0867 43 1 5.1061 -1.4492 0.1425 44 1 3.7099 -1.2199 2.2008 45 1 3.8191 0.3093 1.2962 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885082829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:21 Heat of formation + Delta-G solvation = -116.992328 kcal Electronic energy + Delta-G solvation = -27663.748862 eV Core-core repulsion = 23772.226028 eV Total energy + Delta-G solvation = -3891.522834 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.89856 -38.86201 -37.20742 -35.95423 -35.81144 -33.72265 -33.09917 -31.60691 -31.12964 -30.62145 -27.83157 -27.45750 -24.21312 -23.74933 -22.48301 -22.38271 -20.96294 -20.82193 -19.45696 -17.92809 -17.41094 -16.70006 -16.55940 -16.46733 -15.78413 -15.33112 -15.11725 -14.89965 -14.55677 -14.41999 -14.37538 -13.92080 -13.83433 -13.16281 -12.95678 -12.83242 -12.67379 -12.36715 -12.32172 -12.11036 -12.01746 -12.00107 -11.81920 -11.73650 -11.52249 -11.46386 -11.39443 -11.00386 -10.94684 -10.63401 -10.53513 -10.51428 -9.86615 -9.81365 -9.72692 -9.59654 -8.63815 -8.56655 -8.42376 -6.19905 -4.25007 0.44781 1.27319 1.74072 2.96956 3.22381 3.29126 3.33368 3.49251 3.70943 4.06259 4.24045 4.34766 4.40219 4.48256 4.53595 4.73605 4.82773 4.86215 5.06571 5.12591 5.16948 5.19193 5.19784 5.30752 5.35134 5.41051 5.52675 5.65677 5.67593 5.68990 5.75311 5.83022 5.86334 5.87193 6.03049 6.19488 6.27753 6.45685 6.75338 6.79259 6.86601 6.96819 7.25138 7.38468 7.55035 7.75135 8.10080 8.79781 9.40182 10.90112 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015969 B = 0.002959 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.944552 B = 9460.471919 C =10627.316738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.086 3.914 3 H 0.062 0.938 4 C -0.153 4.153 5 C 0.150 3.850 6 H 0.094 0.906 7 N -1.114 6.114 8 S 2.695 3.305 9 O -0.965 6.965 10 O -0.966 6.966 11 C -0.703 4.703 12 C -0.020 4.020 13 C -0.145 4.145 14 C 0.028 3.972 15 C 0.039 3.961 16 C -0.518 4.518 17 H 0.059 0.941 18 C 0.061 3.939 19 N -0.891 5.891 20 Si 0.898 3.102 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.272 1.272 24 C -0.145 4.145 25 C -0.025 4.025 26 C -0.181 4.181 27 C 0.064 3.936 28 O -0.379 6.379 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.416 0.584 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.035 0.965 38 H 0.035 0.965 39 H 0.264 0.736 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.100 0.900 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.566 2.168 -4.315 23.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.028 3.972 3 H 0.080 0.920 4 C -0.192 4.192 5 C 0.043 3.957 6 H 0.112 0.888 7 N -0.871 5.871 8 S 2.788 3.212 9 O -0.955 6.955 10 O -0.956 6.956 11 C -0.793 4.793 12 C -0.040 4.040 13 C -0.164 4.164 14 C 0.028 3.972 15 C 0.003 3.997 16 C -0.556 4.556 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.529 5.529 20 Si 0.726 3.274 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.164 4.164 25 C -0.045 4.045 26 C -0.220 4.220 27 C -0.013 4.013 28 O -0.299 6.299 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.251 0.749 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.099 0.901 43 H 0.106 0.894 44 H 0.118 0.882 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.392 2.519 -4.843 23.048 hybrid contribution 1.474 -0.274 -0.003 1.499 sum -20.918 2.245 -4.846 21.589 Atomic orbital electron populations 1.21759 0.92828 1.03015 1.02558 1.22082 0.95293 0.95228 0.84615 0.91997 1.22533 0.94365 1.02931 0.99357 1.20832 0.95069 0.95282 0.84565 0.88818 1.55665 1.40888 1.45233 1.45330 1.01619 0.72658 0.73548 0.73329 1.93559 1.86325 1.31215 1.84373 1.93570 1.85155 1.64071 1.52804 1.30288 1.23578 1.03050 1.22348 1.20762 0.93615 0.94247 0.95351 1.21252 0.98002 1.00381 0.96737 1.21118 0.91448 0.91534 0.93133 1.18540 0.90140 0.98683 0.92371 1.20962 0.90286 1.44607 0.99746 0.92304 1.25000 0.99379 0.94892 0.94845 1.69943 1.28538 1.45555 1.08905 0.86481 0.82844 0.78570 0.79535 1.20433 1.21009 1.19704 1.21236 0.96936 0.98066 1.00123 1.20753 0.95504 0.96285 0.91955 1.22848 1.02958 1.01469 0.94714 1.22564 0.80457 0.99952 0.98373 1.87946 1.21269 1.77886 1.42757 0.91677 0.91019 0.91761 0.89953 0.90211 0.74948 0.85291 0.85351 0.94717 0.94714 0.92604 0.85345 0.85418 0.90106 0.89391 0.88171 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.57 37.16 0.36 -0.54 16 2 C 0.09 0.67 3.26 -26.68 -0.09 0.58 16 3 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 4 C -0.15 -1.13 4.96 -26.59 -0.13 -1.26 16 5 C 0.15 1.35 2.87 -67.75 -0.19 1.16 16 6 H 0.09 0.87 7.51 -51.93 -0.39 0.48 16 7 N -1.11 -10.61 5.48 -4.74 -0.03 -10.64 16 8 S 2.70 36.10 5.72 -107.50 -0.61 35.49 16 9 O -0.96 -15.12 16.62 -57.17 -0.95 -16.07 16 10 O -0.97 -15.29 17.28 -57.17 -0.99 -16.28 16 11 C -0.70 -10.52 5.17 -39.58 -0.20 -10.73 16 12 C -0.02 -0.32 9.52 -39.58 -0.38 -0.69 16 13 C -0.14 -2.60 9.70 -39.58 -0.38 -2.98 16 14 C 0.03 0.56 5.07 -104.62 -0.53 0.03 16 15 C 0.04 0.94 5.10 -29.03 -0.15 0.79 16 16 C -0.52 -13.86 9.09 -34.44 -0.31 -14.18 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -25.28 13.29 55.43 0.74 -24.54 16 20 Si 0.90 20.98 29.54 -169.99 -5.02 15.95 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 C -0.14 -2.55 9.70 -39.58 -0.38 -2.93 16 25 C -0.03 -0.39 8.54 -39.58 -0.34 -0.73 16 26 C -0.18 -1.68 5.75 -26.60 -0.15 -1.83 16 27 C 0.06 0.57 6.84 37.21 0.25 0.82 16 28 O -0.38 -3.70 10.41 -35.23 -0.37 -4.07 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.42 3.06 8.84 -34.47 -0.30 2.75 16 35 H 0.13 1.76 7.62 -52.49 -0.40 1.36 16 36 H 0.13 2.21 8.06 -52.49 -0.42 1.79 16 37 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 38 H 0.03 0.86 8.08 -51.93 -0.42 0.44 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.13 2.15 8.06 -52.49 -0.42 1.73 16 41 H 0.13 1.67 7.62 -52.49 -0.40 1.27 16 42 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16 43 H 0.09 0.92 6.24 -51.93 -0.32 0.59 16 44 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 379.70 15.07 5.72 5.72 Total: -1.00 -32.64 379.70 -11.09 -43.73 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -6.85 Total: 1.61 kcal Atomic # 6 Polarization: -28.18 SS G_CDS: -2.73 Total: -30.92 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.71 Total: -35.18 kcal Atomic # 8 Polarization: -34.11 SS G_CDS: -2.31 Total: -36.41 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 36.10 SS G_CDS: -0.61 Total: 35.49 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.64 -11.09 -43.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885082829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.258 kcal (2) G-P(sol) polarization free energy of solvation -32.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds