Wall clock time and date at job start Tue Mar 31 2020 23:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.48117 * 2 1 4 4 C 1.53102 * 109.49316 * 240.06252 * 2 1 3 5 5 C 1.53180 * 109.15766 * 182.49333 * 4 2 1 6 6 H 1.09000 * 109.54329 * 296.93210 * 5 4 2 7 7 N 1.46502 * 109.54447 * 176.75964 * 5 4 2 8 8 S 1.65595 * 120.00239 * 145.17339 * 7 5 4 9 9 O 1.42099 * 106.40087 * 311.46289 * 8 7 5 10 10 O 1.42101 * 106.40448 * 178.53664 * 8 7 5 11 11 C 1.76208 * 107.21740 * 64.99791 * 8 7 5 12 12 C 1.38236 * 119.99728 * 89.99940 * 11 8 7 13 13 C 1.38240 * 120.00058 * 179.97438 * 12 11 8 14 14 C 1.38232 * 119.99631 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99860 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47064 * 89.99959 * 15 14 13 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47094 * 90.00289 * 20 18 16 22 22 H 1.48505 * 109.47195 * 210.00171 * 20 18 16 23 23 H 1.48493 * 109.47449 * 330.00136 * 20 18 16 24 24 C 1.38234 * 120.00312 * 0.27932 * 14 13 12 25 25 C 1.38233 * 120.00113 * 270.02672 * 11 8 7 26 26 C 1.53169 * 109.10986 * 56.84481 * 5 4 2 27 27 C 1.53094 * 109.16621 * 303.06530 * 26 5 4 28 28 O 1.42900 * 109.41526 * 57.61025 * 27 26 5 29 29 H 1.08998 * 109.47581 * 299.97418 * 1 2 3 30 30 H 1.09002 * 109.47127 * 59.98018 * 1 2 3 31 31 H 1.09003 * 109.46985 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.60128 * 62.54271 * 4 2 1 33 33 H 1.09007 * 109.45352 * 302.35077 * 4 2 1 34 34 H 0.97001 * 119.99353 * 325.17679 * 7 5 4 35 35 H 1.08002 * 120.00221 * 0.02562 * 12 11 8 36 36 H 1.07996 * 119.99763 * 180.02562 * 13 12 11 37 37 H 1.09002 * 109.47152 * 330.00052 * 15 14 13 38 38 H 1.09001 * 109.46980 * 210.00152 * 15 14 13 39 39 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 40 40 H 1.07998 * 120.00015 * 179.72855 * 24 14 13 41 41 H 1.07996 * 119.99910 * 0.02562 * 25 11 8 42 42 H 1.09008 * 109.52479 * 62.97245 * 26 5 4 43 43 H 1.09006 * 109.52340 * 183.15823 * 26 5 4 44 44 H 1.09001 * 109.48267 * 177.59150 * 27 26 5 45 45 H 1.08994 * 109.48282 * 297.61546 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0409 -0.7203 -1.2507 5 6 3.5714 -0.7706 -1.2119 6 1 3.9704 0.2433 -1.2413 7 7 4.0663 -1.5256 -2.3657 8 16 5.4868 -1.0866 -3.0949 9 8 5.4120 0.3164 -3.3073 10 8 5.7052 -2.0209 -4.1431 11 6 6.7764 -1.3441 -1.9222 12 6 7.4227 -2.5647 -1.8624 13 6 8.4348 -2.7666 -0.9427 14 6 8.8010 -1.7478 -0.0832 15 6 9.9047 -1.9676 0.9190 16 6 11.2257 -1.5828 0.3041 17 1 11.2622 -1.2153 -0.7108 18 6 12.3874 -1.6988 1.0375 19 7 12.3428 -2.1458 2.2735 20 14 14.0246 -1.2211 0.2754 21 1 14.2940 0.2149 0.5412 22 1 15.1069 -2.0461 0.8700 23 1 13.9745 -1.4523 -1.1905 24 6 8.1512 -0.5290 -0.1394 25 6 7.1415 -0.3259 -1.0615 26 6 4.0178 -1.4596 0.0811 27 6 3.4307 -0.7090 1.2793 28 8 2.0066 -0.6741 1.1665 29 1 -0.3634 0.5134 0.8902 30 1 -0.3633 0.5141 -0.8898 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7166 -0.1816 -2.1410 33 1 1.6435 -1.7351 -1.2730 34 1 3.5618 -2.2825 -2.7025 35 1 7.1375 -3.3602 -2.5348 36 1 8.9400 -3.7200 -0.8964 37 1 9.9304 -3.0187 1.2066 38 1 9.7221 -1.3540 1.8012 39 1 13.1602 -2.2278 2.7893 40 1 8.4343 0.2655 0.5351 41 1 6.6360 0.6274 -1.1077 42 1 3.6617 -2.4899 0.0867 43 1 5.1061 -1.4492 0.1425 44 1 3.7099 -1.2199 2.2008 45 1 3.8191 0.3093 1.2962 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885082829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:20 Heat of formation + Delta-G solvation = -138.740473 kcal Electronic energy + Delta-G solvation = -27664.691932 eV Core-core repulsion = 23772.226028 eV Total energy + Delta-G solvation = -3892.465904 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.59246 -40.21818 -38.37999 -37.01028 -36.72148 -35.60176 -33.69863 -33.31388 -32.01171 -31.85654 -29.25747 -28.39122 -25.60354 -24.89520 -23.72995 -23.10743 -22.46684 -21.53425 -20.50764 -19.05030 -18.61132 -18.44418 -17.54046 -17.21585 -16.86040 -16.71335 -16.26063 -15.98991 -15.71045 -15.61124 -15.27357 -15.09831 -14.66942 -14.63028 -14.45500 -13.96589 -13.48084 -13.41856 -13.40828 -13.28786 -13.24992 -13.19232 -13.09366 -12.78210 -12.68573 -12.65863 -12.50944 -12.19297 -12.10499 -12.04099 -11.98535 -11.68857 -11.43271 -11.25765 -10.65980 -10.56132 -10.47136 -9.95761 -9.92740 -8.27842 -6.40342 -0.65665 -0.06963 0.39879 1.37570 1.38107 1.49293 1.94917 2.33908 2.54785 2.80708 2.88035 3.05030 3.27709 3.64357 3.77060 3.85350 3.92204 3.96841 4.01868 4.14517 4.16685 4.27840 4.45014 4.46825 4.48055 4.56596 4.71038 4.77651 4.81301 4.82032 4.90006 4.90954 5.07448 5.09858 5.11435 5.16690 5.25006 5.26202 5.33567 5.33755 5.37557 5.66684 5.86788 5.91966 6.05913 6.09492 6.33605 6.71676 7.28813 8.82184 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015969 B = 0.002959 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.944552 B = 9460.471919 C =10627.316738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.079 3.921 3 H 0.066 0.934 4 C -0.147 4.147 5 C 0.144 3.856 6 H 0.094 0.906 7 N -1.096 6.096 8 S 2.722 3.278 9 O -0.982 6.982 10 O -0.986 6.986 11 C -0.699 4.699 12 C -0.017 4.017 13 C -0.155 4.155 14 C -0.001 4.001 15 C 0.048 3.952 16 C -0.533 4.533 17 H 0.053 0.947 18 C 0.010 3.990 19 N -0.925 5.925 20 Si 0.963 3.037 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.269 1.269 24 C -0.151 4.151 25 C -0.017 4.017 26 C -0.178 4.178 27 C 0.062 3.938 28 O -0.395 6.395 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.430 0.570 35 H 0.153 0.847 36 H 0.127 0.873 37 H 0.012 0.988 38 H 0.014 0.986 39 H 0.267 0.733 40 H 0.130 0.870 41 H 0.155 0.845 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.100 0.900 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.207 2.872 -5.985 25.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.021 3.979 3 H 0.084 0.916 4 C -0.187 4.187 5 C 0.037 3.963 6 H 0.112 0.888 7 N -0.857 5.857 8 S 2.813 3.187 9 O -0.972 6.972 10 O -0.976 6.976 11 C -0.786 4.786 12 C -0.036 4.036 13 C -0.173 4.173 14 C -0.001 4.001 15 C 0.012 3.988 16 C -0.571 4.571 17 H 0.072 0.928 18 C -0.189 4.189 19 N -0.564 5.564 20 Si 0.787 3.213 21 H -0.196 1.196 22 H -0.204 1.204 23 H -0.193 1.193 24 C -0.170 4.170 25 C -0.037 4.037 26 C -0.218 4.218 27 C -0.016 4.016 28 O -0.315 6.315 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.267 0.733 35 H 0.171 0.829 36 H 0.145 0.855 37 H 0.030 0.970 38 H 0.033 0.967 39 H 0.076 0.924 40 H 0.148 0.852 41 H 0.172 0.828 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.119 0.881 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -24.026 3.212 -6.510 25.099 hybrid contribution 1.825 -0.487 0.505 1.955 sum -22.201 2.725 -6.005 23.160 Atomic orbital electron populations 1.21774 0.91669 1.03159 1.03337 1.22283 0.96251 0.95328 0.84071 0.91559 1.22519 0.92761 1.03612 0.99773 1.21000 0.96389 0.95074 0.83828 0.88754 1.55304 1.39251 1.45838 1.45356 1.00829 0.72617 0.72735 0.72515 1.93541 1.86653 1.32402 1.84571 1.93543 1.85716 1.64541 1.53801 1.30728 1.23695 1.02440 1.21737 1.20978 0.92542 0.95279 0.94779 1.21282 0.98922 0.99962 0.97178 1.20791 0.91934 0.93536 0.93836 1.18258 0.91135 0.96636 0.92811 1.21289 0.91905 1.44326 0.99583 0.92849 1.25846 1.02978 0.94822 0.95255 1.70050 1.29566 1.46647 1.10177 0.85481 0.78586 0.78518 0.78714 1.19634 1.20363 1.19302 1.21273 0.97523 0.97248 1.00947 1.20984 0.94412 0.97442 0.90814 1.22807 1.02084 1.01737 0.95157 1.22590 0.80399 1.00290 0.98276 1.87935 1.21428 1.78269 1.43829 0.91918 0.89266 0.91923 0.88550 0.89536 0.73289 0.82932 0.85484 0.96960 0.96749 0.92386 0.85190 0.82787 0.89956 0.90681 0.88146 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.57 71.98 0.69 -0.75 16 2 C 0.08 1.05 3.26 30.63 0.10 1.15 16 3 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 4 C -0.15 -1.76 4.96 30.69 0.15 -1.61 16 5 C 0.14 2.23 2.87 45.11 0.13 2.36 16 6 H 0.09 1.50 7.51 -2.39 -0.02 1.48 16 7 N -1.10 -17.76 5.48 -168.90 -0.93 -18.68 16 8 S 2.72 65.97 5.72 -56.49 -0.32 65.65 16 9 O -0.98 -28.10 16.62 -128.00 -2.13 -30.23 16 10 O -0.99 -28.69 17.28 -128.00 -2.21 -30.90 16 11 C -0.70 -19.64 5.17 22.27 0.12 -19.53 16 12 C -0.02 -0.50 9.52 22.27 0.21 -0.29 16 13 C -0.15 -5.60 9.70 22.27 0.22 -5.38 16 14 C 0.00 -0.03 5.07 -19.87 -0.10 -0.13 16 15 C 0.05 2.44 5.10 29.10 0.15 2.59 16 16 C -0.53 -29.38 9.09 25.60 0.23 -29.14 16 17 H 0.05 2.93 7.74 -2.91 -0.02 2.90 16 18 C 0.01 0.56 5.46 84.66 0.46 1.02 16 19 N -0.93 -53.85 13.29 21.45 0.28 -53.56 16 20 Si 0.96 43.37 29.54 68.60 2.03 45.40 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 C -0.15 -5.33 9.70 22.27 0.22 -5.12 16 25 C -0.02 -0.51 8.54 22.27 0.19 -0.32 16 26 C -0.18 -3.02 5.75 30.68 0.18 -2.85 16 27 C 0.06 1.03 6.84 72.01 0.49 1.52 16 28 O -0.40 -7.10 10.41 -148.98 -1.55 -8.65 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 32 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.43 4.94 8.84 -96.74 -0.85 4.08 16 35 H 0.15 3.84 7.62 -2.91 -0.02 3.82 16 36 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 37 H 0.01 0.65 8.09 -2.39 -0.02 0.63 16 38 H 0.01 0.75 8.08 -2.39 -0.02 0.74 16 39 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 40 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 41 H 0.15 3.65 7.62 -2.91 -0.02 3.63 16 42 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 43 H 0.07 1.47 6.24 -2.38 -0.01 1.46 16 44 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -70.14 379.70 -1.26 -71.40 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.14 Total: 16.05 kcal Atomic # 6 Polarization: -59.90 SS G_CDS: 3.43 Total: -56.47 kcal Atomic # 7 Polarization: -71.61 SS G_CDS: -0.64 Total: -72.25 kcal Atomic # 8 Polarization: -63.89 SS G_CDS: -5.89 Total: -69.78 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: 65.97 SS G_CDS: -0.32 Total: 65.65 kcal Total: -70.14 -1.26 -71.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885082829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.342 kcal (2) G-P(sol) polarization free energy of solvation -70.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds