Wall clock time and date at job start Tue Mar 31 2020 23:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.49357 * 2 1 4 4 C 1.54871 * 109.49962 * 239.94313 * 2 1 3 5 5 C 1.47683 * 109.68478 * 170.11902 * 4 2 1 6 6 O 1.42566 * 113.66710 * 60.79847 * 5 4 2 7 7 C 1.40532 * 113.53730 * 272.24158 * 6 5 4 8 8 C 1.54293 * 109.86271 * 95.28890 * 7 6 5 9 9 N 1.44460 * 109.52277 * 120.07029 * 2 1 3 10 10 S 1.65601 * 118.50978 * 28.88472 * 9 2 1 11 11 O 1.42104 * 106.40058 * 29.50202 * 10 9 2 12 12 O 1.42099 * 106.40127 * 162.42210 * 10 9 2 13 13 C 1.76199 * 107.21852 * 275.96299 * 10 9 2 14 14 C 1.38233 * 120.00110 * 269.72265 * 13 10 9 15 15 C 1.38237 * 120.00174 * 179.78609 * 14 13 10 16 16 C 1.38238 * 119.99583 * 0.46776 * 15 14 13 17 17 C 1.50701 * 119.99693 * 179.78722 * 16 15 14 18 18 C 1.50700 * 109.47326 * 269.98275 * 17 16 15 19 19 H 1.08008 * 120.00064 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00527 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99590 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00403 * 179.97438 * 20 18 17 23 23 H 1.48490 * 109.46881 * 90.00006 * 22 20 18 24 24 H 1.48502 * 109.46775 * 210.00072 * 22 20 18 25 25 H 1.48496 * 109.46896 * 329.99824 * 22 20 18 26 26 C 1.38233 * 120.00133 * 359.76818 * 16 15 14 27 27 C 1.38231 * 119.99999 * 0.02562 * 26 16 15 28 28 H 1.08998 * 109.46760 * 172.74269 * 1 2 3 29 29 H 1.08999 * 109.46743 * 292.74479 * 1 2 3 30 30 H 1.08999 * 109.47035 * 52.74453 * 1 2 3 31 31 H 1.09004 * 109.43069 * 290.18019 * 4 2 1 32 32 H 1.08999 * 109.43509 * 50.04729 * 4 2 1 33 33 H 1.09002 * 108.65056 * 181.88081 * 5 4 2 34 34 H 1.09001 * 108.64581 * 299.71640 * 5 4 2 35 35 H 1.08998 * 109.40190 * 215.40539 * 7 6 5 36 36 H 1.08999 * 109.40531 * 335.17157 * 7 6 5 37 37 H 1.09004 * 109.23199 * 80.92321 * 8 7 6 38 38 H 1.08994 * 109.23213 * 200.33689 * 8 7 6 39 39 H 1.08005 * 119.99820 * 0.02562 * 14 13 10 40 40 H 1.08000 * 119.99997 * 180.25484 * 15 14 13 41 41 H 1.09003 * 109.47259 * 29.97769 * 17 16 15 42 42 H 1.09003 * 109.47100 * 149.97718 * 17 16 15 43 43 H 0.97005 * 120.00317 * 179.97438 * 21 20 18 44 44 H 1.08003 * 119.99760 * 179.97438 * 26 16 15 45 45 H 1.08000 * 119.99748 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0470 -0.7312 -1.2636 5 6 3.5043 -0.5305 -1.3932 6 8 4.2525 -1.0415 -0.2925 7 6 4.4011 -0.1224 0.7602 8 6 3.3079 -0.3608 1.8225 9 7 2.0128 -0.6822 1.1783 10 16 1.0760 -1.8772 1.8393 11 8 0.3389 -2.4485 0.7671 12 8 1.9300 -2.6344 2.6858 13 6 -0.1014 -1.0951 2.8913 14 6 0.1966 -0.8825 4.2243 15 6 -0.7254 -0.2649 5.0487 16 6 -1.9491 0.1313 4.5422 17 6 -2.9560 0.8002 5.4420 18 6 -3.8396 -0.2455 6.0721 19 1 -3.6874 -1.2900 5.8434 20 6 -4.8428 0.1312 6.9396 21 7 -5.0284 1.4032 7.2176 22 14 -5.9384 -1.1649 7.7199 23 1 -5.3384 -1.6135 9.0020 24 1 -7.2821 -0.5874 7.9775 25 1 -6.0658 -2.3241 6.8006 26 6 -2.2489 -0.0857 3.2104 27 6 -1.3253 -0.6994 2.3851 28 1 -0.3633 -1.0194 -0.1298 29 1 -0.3633 0.3973 0.9478 30 1 -0.3633 0.6221 -0.8180 31 1 1.8337 -1.7968 -1.1786 32 1 1.5458 -0.3308 -2.1448 33 1 3.8444 -1.0230 -2.3042 34 1 3.7024 0.5376 -1.4833 35 1 5.3829 -0.2495 1.2160 36 1 4.3124 0.8918 0.3706 37 1 3.6054 -1.1904 2.4640 38 1 3.1937 0.5381 2.4282 39 1 1.1512 -1.1954 4.6209 40 1 -0.4910 -0.0952 6.0892 41 1 -2.4344 1.3535 6.2230 42 1 -3.5669 1.4872 4.8563 43 1 -5.7345 1.6684 7.8276 44 1 -3.2051 0.2236 2.8148 45 1 -1.5598 -0.8693 1.3446 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885088612.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:31 Heat of formation + Delta-G solvation = -80.297257 kcal Electronic energy + Delta-G solvation = -28386.661568 eV Core-core repulsion = 24496.729952 eV Total energy + Delta-G solvation = -3889.931616 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.87003 -38.88653 -37.53272 -36.26428 -35.70047 -33.73158 -33.50169 -31.65474 -30.77486 -29.43773 -28.45116 -27.42483 -24.37317 -23.72730 -22.46441 -22.16198 -21.75979 -20.86447 -18.70501 -17.74910 -17.57187 -16.97897 -16.46549 -16.35414 -15.92417 -15.38981 -15.10431 -14.72885 -14.57535 -14.44029 -14.19001 -13.83330 -13.50037 -13.42791 -13.17502 -12.90899 -12.85154 -12.48164 -12.33979 -12.14303 -11.98593 -11.79482 -11.69911 -11.50116 -11.41002 -11.32986 -10.94352 -10.92254 -10.86125 -10.57861 -10.49909 -10.40241 -9.90789 -9.73030 -9.66715 -9.13361 -8.57278 -8.53829 -8.36401 -6.18336 -4.23350 0.49342 1.32339 1.77647 2.92465 3.23636 3.30162 3.34644 3.58636 3.78397 4.05321 4.34865 4.35338 4.41121 4.46914 4.62593 4.78705 4.89514 5.00468 5.09494 5.15236 5.19682 5.20948 5.24147 5.28992 5.35732 5.44954 5.50360 5.55540 5.70654 5.74563 5.77006 5.86277 5.90414 6.00834 6.23750 6.28590 6.32176 6.47728 6.60340 6.82604 6.89617 7.00770 7.27898 7.42038 7.57719 7.76816 8.12089 8.81471 9.41726 10.91700 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.026032 B = 0.002798 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.343663 B =10005.911100 C =10106.734156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.160 3.840 3 H 0.081 0.919 4 C -0.173 4.173 5 C 0.062 3.938 6 O -0.367 6.367 7 C 0.055 3.945 8 C 0.081 3.919 9 N -0.985 5.985 10 S 2.696 3.304 11 O -0.961 6.961 12 O -0.966 6.966 13 C -0.705 4.705 14 C -0.022 4.022 15 C -0.146 4.146 16 C 0.027 3.973 17 C 0.040 3.960 18 C -0.518 4.518 19 H 0.059 0.941 20 C 0.061 3.939 21 N -0.892 5.892 22 Si 0.899 3.101 23 H -0.278 1.278 24 H -0.285 1.285 25 H -0.272 1.272 26 C -0.147 4.147 27 C -0.030 4.030 28 H 0.117 0.883 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.049 0.951 35 H 0.096 0.904 36 H 0.057 0.943 37 H 0.103 0.897 38 H 0.074 0.926 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.264 0.736 44 H 0.128 0.872 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.353 0.960 -16.201 23.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 C 0.053 3.947 3 H 0.099 0.901 4 C -0.212 4.212 5 C -0.014 4.014 6 O -0.285 6.285 7 C -0.024 4.024 8 C -0.044 4.044 9 N -0.823 5.823 10 S 2.791 3.209 11 O -0.951 6.951 12 O -0.956 6.956 13 C -0.794 4.794 14 C -0.042 4.042 15 C -0.165 4.165 16 C 0.026 3.974 17 C 0.003 3.997 18 C -0.556 4.556 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.530 5.530 22 Si 0.726 3.274 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.166 4.166 27 C -0.049 4.049 28 H 0.135 0.865 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.067 0.933 35 H 0.114 0.886 36 H 0.075 0.925 37 H 0.121 0.879 38 H 0.093 0.907 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.074 0.926 44 H 0.146 0.854 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 17.440 0.031 -16.269 23.850 hybrid contribution -1.234 0.367 0.934 1.590 sum 16.206 0.398 -15.336 22.315 Atomic orbital electron populations 1.23602 0.94225 1.07553 1.04866 1.20707 0.94301 0.96142 0.83523 0.90082 1.22159 0.96646 1.03650 0.98752 1.21554 0.91826 0.98506 0.89517 1.87493 1.72469 1.40838 1.27651 1.22817 0.98155 0.92850 0.88557 1.22628 0.82632 1.03111 0.95979 1.57226 1.29877 1.56980 1.38187 1.01733 0.72970 0.72937 0.73275 1.93450 1.72564 1.75476 1.53618 1.93512 1.66181 1.67526 1.68383 1.30404 1.14471 1.24553 1.10019 1.20756 0.98948 0.93072 0.91408 1.21240 0.94178 1.01014 1.00097 1.21113 0.93596 0.88701 0.93961 1.18535 0.91919 0.95813 0.93452 1.20974 1.14983 0.92937 1.26665 0.92279 1.25004 0.97289 0.95546 0.96301 1.69948 1.32503 1.15114 1.35444 0.86476 0.79715 0.81499 0.79714 1.20436 1.21020 1.19673 1.21253 0.99586 1.01760 0.94025 1.21044 0.91415 0.92740 0.99723 0.86472 0.90025 0.89986 0.89634 0.89361 0.89771 0.93283 0.88625 0.92499 0.87871 0.90735 0.85395 0.85369 0.94750 0.94736 0.92627 0.85358 0.84501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -2.49 6.80 37.16 0.25 -2.24 16 2 C 0.16 1.53 2.51 -68.03 -0.17 1.36 16 3 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 4 C -0.17 -1.52 5.29 -28.31 -0.15 -1.67 16 5 C 0.06 0.50 6.04 34.59 0.21 0.71 16 6 O -0.37 -3.76 10.23 -34.11 -0.35 -4.10 16 7 C 0.06 0.43 6.50 37.83 0.25 0.68 16 8 C 0.08 0.77 6.70 -2.44 -0.02 0.75 16 9 N -0.99 -11.15 2.80 -105.63 -0.30 -11.45 16 10 S 2.70 39.71 5.10 -107.50 -0.55 39.16 16 11 O -0.96 -15.35 13.14 -57.17 -0.75 -16.10 16 12 O -0.97 -16.42 15.54 -57.17 -0.89 -17.31 16 13 C -0.71 -11.27 5.55 -39.58 -0.22 -11.49 16 14 C -0.02 -0.37 9.52 -39.58 -0.38 -0.75 16 15 C -0.15 -2.73 9.70 -39.58 -0.38 -3.11 16 16 C 0.03 0.55 5.07 -104.62 -0.53 0.02 16 17 C 0.04 0.97 5.10 -29.03 -0.15 0.82 16 18 C -0.52 -14.04 9.09 -34.44 -0.31 -14.35 16 19 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -25.50 13.29 55.43 0.74 -24.76 16 22 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 25 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 26 C -0.15 -2.71 9.70 -39.59 -0.38 -3.09 16 27 C -0.03 -0.48 7.04 -39.58 -0.28 -0.76 16 28 H 0.12 1.39 4.35 -51.93 -0.23 1.17 16 29 H 0.08 0.90 4.71 -51.93 -0.24 0.66 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 0.95 7.41 -51.93 -0.38 0.56 16 32 H 0.09 0.58 8.13 -51.93 -0.42 0.16 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.30 7.28 -51.93 -0.38 -0.08 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.34 7.21 -51.93 -0.37 -0.03 16 37 H 0.10 1.06 6.62 -51.93 -0.34 0.72 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.13 1.83 7.61 -52.48 -0.40 1.43 16 40 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 41 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 42 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 43 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.13 2.23 8.06 -52.48 -0.42 1.81 16 45 H 0.14 1.88 5.24 -52.49 -0.27 1.61 16 LS Contribution 358.59 15.07 5.40 5.40 Total: -1.00 -32.76 358.59 -10.46 -43.22 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -6.39 Total: 1.41 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: -2.36 Total: -31.57 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.44 Total: -36.21 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -1.99 Total: -37.51 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 39.71 SS G_CDS: -0.55 Total: 39.16 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.76 -10.46 -43.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885088612.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.075 kcal (2) G-P(sol) polarization free energy of solvation -32.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds