Wall clock time and date at job start Tue Mar 31 2020 23:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.49357 * 2 1 4 4 C 1.54871 * 109.49962 * 239.94313 * 2 1 3 5 5 C 1.47683 * 109.68478 * 170.11902 * 4 2 1 6 6 O 1.42566 * 113.66710 * 60.79847 * 5 4 2 7 7 C 1.40532 * 113.53730 * 272.24158 * 6 5 4 8 8 C 1.54293 * 109.86271 * 95.28890 * 7 6 5 9 9 N 1.44460 * 109.52277 * 120.07029 * 2 1 3 10 10 S 1.65601 * 118.50978 * 28.88472 * 9 2 1 11 11 O 1.42104 * 106.40058 * 29.50202 * 10 9 2 12 12 O 1.42099 * 106.40127 * 162.42210 * 10 9 2 13 13 C 1.76199 * 107.21852 * 275.96299 * 10 9 2 14 14 C 1.38233 * 120.00110 * 269.72265 * 13 10 9 15 15 C 1.38237 * 120.00174 * 179.78609 * 14 13 10 16 16 C 1.38238 * 119.99583 * 0.46776 * 15 14 13 17 17 C 1.50701 * 119.99693 * 179.78722 * 16 15 14 18 18 C 1.50700 * 109.47326 * 269.98275 * 17 16 15 19 19 H 1.08008 * 120.00064 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00527 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99590 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00403 * 179.97438 * 20 18 17 23 23 H 1.48490 * 109.46881 * 90.00006 * 22 20 18 24 24 H 1.48502 * 109.46775 * 210.00072 * 22 20 18 25 25 H 1.48496 * 109.46896 * 329.99824 * 22 20 18 26 26 C 1.38233 * 120.00133 * 359.76818 * 16 15 14 27 27 C 1.38231 * 119.99999 * 0.02562 * 26 16 15 28 28 H 1.08998 * 109.46760 * 172.74269 * 1 2 3 29 29 H 1.08999 * 109.46743 * 292.74479 * 1 2 3 30 30 H 1.08999 * 109.47035 * 52.74453 * 1 2 3 31 31 H 1.09004 * 109.43069 * 290.18019 * 4 2 1 32 32 H 1.08999 * 109.43509 * 50.04729 * 4 2 1 33 33 H 1.09002 * 108.65056 * 181.88081 * 5 4 2 34 34 H 1.09001 * 108.64581 * 299.71640 * 5 4 2 35 35 H 1.08998 * 109.40190 * 215.40539 * 7 6 5 36 36 H 1.08999 * 109.40531 * 335.17157 * 7 6 5 37 37 H 1.09004 * 109.23199 * 80.92321 * 8 7 6 38 38 H 1.08994 * 109.23213 * 200.33689 * 8 7 6 39 39 H 1.08005 * 119.99820 * 0.02562 * 14 13 10 40 40 H 1.08000 * 119.99997 * 180.25484 * 15 14 13 41 41 H 1.09003 * 109.47259 * 29.97769 * 17 16 15 42 42 H 1.09003 * 109.47100 * 149.97718 * 17 16 15 43 43 H 0.97005 * 120.00317 * 179.97438 * 21 20 18 44 44 H 1.08003 * 119.99760 * 179.97438 * 26 16 15 45 45 H 1.08000 * 119.99748 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0470 -0.7312 -1.2636 5 6 3.5043 -0.5305 -1.3932 6 8 4.2525 -1.0415 -0.2925 7 6 4.4011 -0.1224 0.7602 8 6 3.3079 -0.3608 1.8225 9 7 2.0128 -0.6822 1.1783 10 16 1.0760 -1.8772 1.8393 11 8 0.3389 -2.4485 0.7671 12 8 1.9300 -2.6344 2.6858 13 6 -0.1014 -1.0951 2.8913 14 6 0.1966 -0.8825 4.2243 15 6 -0.7254 -0.2649 5.0487 16 6 -1.9491 0.1313 4.5422 17 6 -2.9560 0.8002 5.4420 18 6 -3.8396 -0.2455 6.0721 19 1 -3.6874 -1.2900 5.8434 20 6 -4.8428 0.1312 6.9396 21 7 -5.0284 1.4032 7.2176 22 14 -5.9384 -1.1649 7.7199 23 1 -5.3384 -1.6135 9.0020 24 1 -7.2821 -0.5874 7.9775 25 1 -6.0658 -2.3241 6.8006 26 6 -2.2489 -0.0857 3.2104 27 6 -1.3253 -0.6994 2.3851 28 1 -0.3633 -1.0194 -0.1298 29 1 -0.3633 0.3973 0.9478 30 1 -0.3633 0.6221 -0.8180 31 1 1.8337 -1.7968 -1.1786 32 1 1.5458 -0.3308 -2.1448 33 1 3.8444 -1.0230 -2.3042 34 1 3.7024 0.5376 -1.4833 35 1 5.3829 -0.2495 1.2160 36 1 4.3124 0.8918 0.3706 37 1 3.6054 -1.1904 2.4640 38 1 3.1937 0.5381 2.4282 39 1 1.1512 -1.1954 4.6209 40 1 -0.4910 -0.0952 6.0892 41 1 -2.4344 1.3535 6.2230 42 1 -3.5669 1.4872 4.8563 43 1 -5.7345 1.6684 7.8276 44 1 -3.2051 0.2236 2.8148 45 1 -1.5598 -0.8693 1.3446 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885088612.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:30 Heat of formation + Delta-G solvation = -101.493737 kcal Electronic energy + Delta-G solvation = -28387.580717 eV Core-core repulsion = 24496.729952 eV Total energy + Delta-G solvation = -3890.850764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.57805 -40.28314 -38.68637 -37.16009 -36.86359 -35.62622 -34.21536 -33.39334 -32.12402 -30.25226 -29.20271 -29.17777 -25.61227 -25.09116 -23.71001 -22.90486 -22.60224 -22.40896 -19.88402 -18.91790 -18.56880 -18.38240 -17.87523 -17.08895 -16.89685 -16.76247 -16.36042 -16.01284 -15.81653 -15.48123 -15.33832 -14.98956 -14.63371 -14.58964 -14.29889 -14.04490 -13.98162 -13.64064 -13.43516 -13.42099 -13.34593 -13.24342 -13.01432 -12.69514 -12.66741 -12.63292 -12.26992 -12.15196 -12.04220 -11.93175 -11.68148 -11.49416 -11.38108 -11.33656 -10.66352 -10.56771 -10.04081 -9.94961 -9.82068 -8.28236 -6.40952 -0.66395 -0.08197 0.37333 1.37653 1.37914 1.49447 1.90391 2.34015 2.56746 2.73102 3.04445 3.05454 3.24505 3.59657 3.78714 3.81835 3.93173 3.97488 4.14270 4.21608 4.25691 4.39003 4.40134 4.46240 4.50289 4.63052 4.67030 4.70318 4.79519 4.84032 4.84541 4.88189 4.93561 5.01514 5.08992 5.13823 5.23256 5.24933 5.31378 5.31649 5.50890 5.66023 5.78631 5.84804 5.90567 6.08764 6.45198 6.70751 7.28202 8.81828 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.026032 B = 0.002798 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.343663 B =10005.911100 C =10106.734156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.153 3.847 3 H 0.110 0.890 4 C -0.171 4.171 5 C 0.055 3.945 6 O -0.394 6.394 7 C 0.054 3.946 8 C 0.070 3.930 9 N -0.977 5.977 10 S 2.709 3.291 11 O -0.975 6.975 12 O -0.990 6.990 13 C -0.702 4.702 14 C -0.020 4.020 15 C -0.155 4.155 16 C -0.002 4.002 17 C 0.049 3.951 18 C -0.535 4.535 19 H 0.053 0.947 20 C 0.010 3.990 21 N -0.925 5.925 22 Si 0.963 3.037 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.268 1.268 26 C -0.156 4.156 27 C -0.021 4.021 28 H 0.099 0.901 29 H 0.070 0.930 30 H 0.107 0.893 31 H 0.056 0.944 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.151 0.849 40 H 0.130 0.870 41 H 0.013 0.987 42 H 0.015 0.985 43 H 0.268 0.732 44 H 0.131 0.869 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.730 1.013 -17.827 25.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 C 0.047 3.953 3 H 0.128 0.872 4 C -0.210 4.210 5 C -0.021 4.021 6 O -0.312 6.312 7 C -0.025 4.025 8 C -0.054 4.054 9 N -0.817 5.817 10 S 2.802 3.198 11 O -0.965 6.965 12 O -0.980 6.980 13 C -0.789 4.789 14 C -0.039 4.039 15 C -0.174 4.174 16 C -0.002 4.002 17 C 0.012 3.988 18 C -0.572 4.572 19 H 0.071 0.929 20 C -0.189 4.189 21 N -0.564 5.564 22 Si 0.788 3.212 23 H -0.197 1.197 24 H -0.202 1.202 25 H -0.193 1.193 26 C -0.175 4.175 27 C -0.040 4.040 28 H 0.117 0.883 29 H 0.089 0.911 30 H 0.126 0.874 31 H 0.075 0.925 32 H 0.131 0.869 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.130 0.870 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.115 0.885 39 H 0.169 0.831 40 H 0.148 0.852 41 H 0.032 0.968 42 H 0.033 0.967 43 H 0.077 0.923 44 H 0.149 0.851 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 18.807 0.085 -17.883 25.952 hybrid contribution -1.547 0.371 1.317 2.065 sum 17.259 0.455 -16.567 23.928 Atomic orbital electron populations 1.23585 0.94908 1.06829 1.05308 1.20991 0.93894 0.97467 0.82948 0.87235 1.22176 0.97695 1.01863 0.99294 1.21714 0.90941 1.00162 0.89250 1.87473 1.72802 1.42333 1.28625 1.22987 0.98083 0.93713 0.87724 1.22926 0.82091 1.03544 0.96822 1.57059 1.29826 1.56496 1.38356 1.01316 0.72550 0.73237 0.72662 1.93448 1.73146 1.76377 1.53506 1.93479 1.66497 1.68767 1.69263 1.30826 1.14873 1.22966 1.10217 1.20983 0.99334 0.92181 0.91432 1.21288 0.93994 1.01511 1.00623 1.20821 0.93881 0.90976 0.94533 1.18259 0.92214 0.95090 0.93230 1.21292 1.15711 0.93222 1.27012 0.92888 1.25851 0.98670 0.97557 0.96783 1.70052 1.33286 1.16905 1.36175 0.85468 0.77993 0.78913 0.78857 1.19691 1.20230 1.19268 1.21319 1.00384 1.02295 0.93467 1.21282 0.90778 0.91401 1.00525 0.88252 0.91111 0.87398 0.92484 0.86914 0.88998 0.90709 0.87037 0.90063 0.89251 0.88541 0.83098 0.85233 0.96846 0.96721 0.92348 0.85067 0.82053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.45 6.80 71.98 0.49 -3.96 16 2 C 0.15 2.46 2.51 46.01 0.12 2.57 16 3 H 0.11 1.20 8.10 -2.39 -0.02 1.18 16 4 C -0.17 -2.54 5.29 29.57 0.16 -2.38 16 5 C 0.06 0.71 6.04 70.32 0.42 1.13 16 6 O -0.39 -7.07 10.23 -144.96 -1.48 -8.55 16 7 C 0.05 0.66 6.50 72.42 0.47 1.13 16 8 C 0.07 1.15 6.70 86.50 0.58 1.73 16 9 N -0.98 -19.96 2.80 -488.09 -1.37 -21.33 16 10 S 2.71 76.55 5.10 -56.49 -0.29 76.26 16 11 O -0.97 -30.23 13.14 -128.00 -1.68 -31.91 16 12 O -0.99 -32.82 15.54 -128.00 -1.99 -34.81 16 13 C -0.70 -21.70 5.55 22.27 0.12 -21.58 16 14 C -0.02 -0.65 9.52 22.27 0.21 -0.44 16 15 C -0.16 -5.86 9.70 22.27 0.22 -5.64 16 16 C 0.00 -0.08 5.07 -19.87 -0.10 -0.18 16 17 C 0.05 2.51 5.10 29.10 0.15 2.66 16 18 C -0.53 -29.84 9.09 25.60 0.23 -29.61 16 19 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 20 C 0.01 0.58 5.46 84.65 0.46 1.05 16 21 N -0.92 -54.10 13.29 21.45 0.28 -53.81 16 22 Si 0.96 43.67 29.54 68.60 2.03 45.69 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 26 C -0.16 -5.79 9.70 22.27 0.22 -5.57 16 27 C -0.02 -0.66 7.04 22.27 0.16 -0.51 16 28 H 0.10 2.19 4.35 -2.39 -0.01 2.18 16 29 H 0.07 1.42 4.71 -2.39 -0.01 1.41 16 30 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.06 1.19 7.41 -2.39 -0.02 1.17 16 32 H 0.11 1.09 8.13 -2.39 -0.02 1.07 16 33 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 0.57 7.28 -2.39 -0.02 0.55 16 35 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.08 0.60 7.21 -2.39 -0.02 0.59 16 37 H 0.09 1.71 6.62 -2.39 -0.02 1.70 16 38 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.15 4.12 7.61 -2.91 -0.02 4.10 16 40 H 0.13 4.71 8.06 -2.91 -0.02 4.69 16 41 H 0.01 0.72 8.09 -2.39 -0.02 0.70 16 42 H 0.01 0.78 8.09 -2.39 -0.02 0.76 16 43 H 0.27 14.67 8.31 -92.70 -0.77 13.90 16 44 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 45 H 0.16 4.22 5.24 -2.91 -0.02 4.21 16 Total: -1.00 -72.16 358.59 0.40 -71.75 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 1.00 Total: 16.32 kcal Atomic # 6 Polarization: -63.51 SS G_CDS: 3.90 Total: -59.61 kcal Atomic # 7 Polarization: -74.06 SS G_CDS: -1.08 Total: -75.14 kcal Atomic # 8 Polarization: -70.13 SS G_CDS: -5.15 Total: -75.28 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: 76.55 SS G_CDS: -0.29 Total: 76.26 kcal Total: -72.16 0.40 -71.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885088612.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.739 kcal (2) G-P(sol) polarization free energy of solvation -72.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds