Wall clock time and date at job start Tue Mar 31 2020 23:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 107.99708 * 2 1 4 4 C 1.55330 * 108.13003 * 116.78569 * 2 1 3 5 5 C 1.55187 * 108.97629 * 162.02212 * 4 2 1 6 6 O 1.39939 * 110.40803 * 37.85003 * 5 4 2 7 7 C 1.42382 * 108.64106 * 258.83494 * 6 5 4 8 8 C 1.46916 * 113.78703 * 92.60035 * 7 6 5 9 9 N 1.43422 * 107.96538 * 243.31080 * 2 1 3 10 10 S 1.65594 * 120.63700 * 328.98996 * 9 2 1 11 11 O 1.42101 * 106.40761 * 201.00188 * 10 9 2 12 12 O 1.42100 * 106.40235 * 333.92341 * 10 9 2 13 13 C 1.76207 * 107.21951 * 87.46034 * 10 9 2 14 14 C 1.38232 * 120.00119 * 269.73158 * 13 10 9 15 15 C 1.38232 * 119.99895 * 179.78664 * 14 13 10 16 16 C 1.38239 * 119.99810 * 0.44042 * 15 14 13 17 17 C 1.50701 * 119.99839 * 179.83399 * 16 15 14 18 18 C 1.50703 * 109.47026 * 269.97803 * 17 16 15 19 19 H 1.07990 * 120.00225 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99847 * 180.02562 * 18 17 16 21 21 N 1.31519 * 119.99678 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00136 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47038 * 59.99696 * 22 20 18 24 24 H 1.48494 * 109.47378 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.46932 * 300.00420 * 22 20 18 26 26 C 1.38231 * 120.00002 * 359.81032 * 16 15 14 27 27 C 1.38228 * 120.00263 * 359.97438 * 26 16 15 28 28 H 1.08997 * 109.47267 * 309.53387 * 1 2 3 29 29 H 1.08997 * 109.47428 * 69.53545 * 1 2 3 30 30 H 1.09002 * 109.47260 * 189.53748 * 1 2 3 31 31 H 1.09004 * 109.56801 * 281.89892 * 4 2 1 32 32 H 1.08993 * 109.56869 * 42.13564 * 4 2 1 33 33 H 1.09005 * 109.25581 * 158.19839 * 5 4 2 34 34 H 1.08993 * 109.25453 * 277.63626 * 5 4 2 35 35 H 1.08998 * 108.62194 * 331.48587 * 7 6 5 36 36 H 1.08997 * 108.61649 * 213.70685 * 7 6 5 37 37 H 1.09001 * 109.99065 * 183.87787 * 8 7 6 38 38 H 1.09000 * 110.07054 * 62.54974 * 8 7 6 39 39 H 1.07999 * 120.00148 * 359.97438 * 14 13 10 40 40 H 1.08001 * 120.00246 * 180.26812 * 15 14 13 41 41 H 1.08999 * 109.47200 * 29.97458 * 17 16 15 42 42 H 1.08996 * 109.47470 * 149.97562 * 17 16 15 43 43 H 0.97001 * 119.99353 * 179.97438 * 21 20 18 44 44 H 1.08004 * 119.99977 * 180.02562 * 26 16 15 45 45 H 1.07999 * 120.00171 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8667 1.0367 0.0000 4 6 2.0133 -0.6652 1.3178 5 6 3.4969 -1.0900 1.1540 6 8 4.1991 -0.1338 0.4118 7 6 4.3384 -0.6068 -0.9239 8 6 3.2684 -0.1591 -1.8256 9 7 1.9723 -0.6128 -1.2189 10 16 1.0709 -1.7983 -1.9430 11 8 1.9583 -2.5172 -2.7885 12 8 0.3125 -2.4129 -0.9103 13 6 -0.0878 -0.9988 -3.0027 14 6 -1.3326 -0.6402 -2.5203 15 6 -2.2400 -0.0091 -3.3505 16 6 -1.9058 0.2554 -4.6655 17 6 -2.8964 0.9401 -5.5716 18 6 -3.7467 -0.0960 -6.2605 19 1 -3.5861 -1.1452 -6.0618 20 6 -4.7296 0.2958 -7.1446 21 7 -4.9254 1.5737 -7.3861 22 14 -5.7831 -0.9885 -7.9991 23 1 -6.5130 -1.7867 -6.9815 24 1 -6.7593 -0.3138 -8.8918 25 1 -4.9148 -1.8860 -8.8026 26 6 -0.6629 -0.1078 -5.1493 27 6 0.2461 -0.7350 -4.3180 28 1 -0.3633 0.6541 0.7926 29 1 -0.3634 0.3593 -0.9628 30 1 -0.3634 -1.0135 0.1703 31 1 1.9256 0.0459 2.1393 32 1 1.4031 -1.5434 1.5285 33 1 3.9529 -1.1901 2.1390 34 1 3.5413 -2.0494 0.6387 35 1 4.3469 -1.6966 -0.9081 36 1 5.2935 -0.2599 -1.3181 37 1 3.3972 -0.6102 -2.8096 38 1 3.2802 0.9275 -1.9097 39 1 -1.5952 -0.8505 -1.4941 40 1 -3.2110 0.2750 -2.9725 41 1 -3.5334 1.5990 -4.9815 42 1 -2.3609 1.5259 -6.3187 43 1 -5.6166 1.8492 -8.0084 44 1 -0.4016 0.0991 -6.1766 45 1 1.2173 -1.0184 -4.6958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885088613.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:34 Heat of formation + Delta-G solvation = -78.907519 kcal Electronic energy + Delta-G solvation = -28384.983201 eV Core-core repulsion = 24495.111849 eV Total energy + Delta-G solvation = -3889.871353 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.07951 -38.89299 -37.56304 -36.32234 -35.78822 -33.74045 -33.47593 -31.63322 -30.71873 -29.16312 -28.61311 -27.43730 -24.20384 -23.72578 -22.84299 -22.31115 -21.58152 -20.87721 -18.78202 -17.84699 -17.38750 -16.92046 -16.47931 -16.41377 -15.93152 -15.35319 -15.19533 -15.11703 -14.45441 -14.43034 -14.05362 -13.79163 -13.53704 -13.31464 -13.25840 -12.91739 -12.71151 -12.42642 -12.38463 -12.24145 -12.05005 -11.79549 -11.72430 -11.60912 -11.50248 -11.14017 -11.08098 -10.95009 -10.91536 -10.57663 -10.52795 -10.43062 -9.86739 -9.75551 -9.68662 -9.24751 -8.59071 -8.54651 -8.38383 -6.18603 -4.23821 0.41618 1.30006 1.76060 2.87256 3.24857 3.29144 3.32493 3.64348 3.73841 4.03128 4.25399 4.35575 4.45857 4.60874 4.65574 4.77630 4.93234 4.96226 5.09428 5.13271 5.17751 5.19129 5.26409 5.33514 5.41504 5.50772 5.52663 5.58550 5.69764 5.72065 5.79025 5.83313 5.88750 5.96771 6.22159 6.29302 6.30542 6.44561 6.55383 6.81075 6.85362 6.88483 7.27043 7.40811 7.56977 7.76255 8.11487 8.80719 9.41158 10.91395 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.026027 B = 0.002793 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.559922 B =10022.289327 C =10124.603057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.164 3.836 3 H 0.082 0.918 4 C -0.162 4.162 5 C 0.051 3.949 6 O -0.353 6.353 7 C 0.034 3.966 8 C 0.094 3.906 9 N -0.993 5.993 10 S 2.695 3.305 11 O -0.967 6.967 12 O -0.959 6.959 13 C -0.704 4.704 14 C -0.028 4.028 15 C -0.146 4.146 16 C 0.027 3.973 17 C 0.040 3.960 18 C -0.519 4.519 19 H 0.058 0.942 20 C 0.061 3.939 21 N -0.892 5.892 22 Si 0.899 3.101 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C -0.146 4.146 27 C -0.023 4.023 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.108 0.892 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.265 0.735 44 H 0.129 0.871 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.148 -1.934 15.665 23.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 C 0.056 3.944 3 H 0.100 0.900 4 C -0.201 4.201 5 C -0.027 4.027 6 O -0.271 6.271 7 C -0.044 4.044 8 C -0.030 4.030 9 N -0.831 5.831 10 S 2.790 3.210 11 O -0.958 6.958 12 O -0.950 6.950 13 C -0.793 4.793 14 C -0.047 4.047 15 C -0.165 4.165 16 C 0.027 3.973 17 C 0.003 3.997 18 C -0.557 4.557 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.530 5.530 22 Si 0.726 3.274 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.164 4.164 27 C -0.043 4.043 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.126 0.874 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.111 0.889 37 H 0.125 0.875 38 H 0.106 0.894 39 H 0.153 0.847 40 H 0.147 0.853 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.074 0.926 44 H 0.147 0.853 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 17.222 -2.510 15.763 23.481 hybrid contribution -1.219 -0.170 -1.005 1.589 sum 16.003 -2.681 14.757 21.933 Atomic orbital electron populations 1.23498 0.95057 1.06645 1.04533 1.20245 0.93743 0.97407 0.83002 0.90011 1.23477 0.96648 1.02353 0.97654 1.22706 0.91924 0.91342 0.96726 1.87740 1.74973 1.44015 1.20335 1.21910 0.98829 0.99424 0.84251 1.21652 0.81711 1.02061 0.97536 1.57854 1.33283 1.58777 1.33136 1.01742 0.73127 0.72918 0.73201 1.93528 1.64785 1.69081 1.68361 1.93488 1.71546 1.73887 1.56052 1.30345 1.13671 1.24774 1.10539 1.20947 0.91397 0.92845 0.99491 1.21258 0.99728 1.01391 0.94135 1.21120 0.93655 0.88759 0.93776 1.18533 0.92155 0.95676 0.93342 1.20932 1.16932 0.92688 1.25134 0.92337 1.25004 0.97120 0.95517 0.96467 1.69940 1.33017 1.14578 1.35433 0.86533 0.80024 0.81314 0.79490 1.20027 1.21089 1.20026 1.21238 0.94114 1.01014 1.00081 1.20746 0.99042 0.93086 0.91406 0.90358 0.90522 0.87371 0.90081 0.89961 0.90399 0.92689 0.92020 0.88944 0.87480 0.89366 0.84692 0.85329 0.94716 0.94718 0.92554 0.85334 0.85426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -2.53 6.80 37.15 0.25 -2.27 16 2 C 0.16 1.64 2.25 -68.33 -0.15 1.48 16 3 H 0.08 0.77 7.99 -51.93 -0.41 0.36 16 4 C -0.16 -1.43 6.06 -24.34 -0.15 -1.58 16 5 C 0.05 0.44 6.40 38.32 0.25 0.68 16 6 O -0.35 -3.36 10.25 -32.77 -0.34 -3.69 16 7 C 0.03 0.28 6.01 34.24 0.21 0.48 16 8 C 0.09 0.82 6.28 -4.93 -0.03 0.79 16 9 N -0.99 -10.80 2.82 -108.38 -0.31 -11.10 16 10 S 2.70 37.65 5.12 -107.50 -0.55 37.10 16 11 O -0.97 -15.22 16.00 -57.17 -0.91 -16.13 16 12 O -0.96 -14.71 13.89 -57.17 -0.79 -15.51 16 13 C -0.70 -11.05 5.54 -39.58 -0.22 -11.27 16 14 C -0.03 -0.44 7.24 -39.59 -0.29 -0.73 16 15 C -0.15 -2.69 9.70 -39.58 -0.38 -3.07 16 16 C 0.03 0.56 5.07 -104.62 -0.53 0.03 16 17 C 0.04 0.97 5.10 -29.03 -0.15 0.82 16 18 C -0.52 -14.03 9.09 -34.44 -0.31 -14.35 16 19 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -25.46 13.29 55.43 0.74 -24.73 16 22 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 26 C -0.15 -2.68 9.70 -39.59 -0.38 -3.07 16 27 C -0.02 -0.38 9.52 -39.58 -0.38 -0.75 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.88 4.51 -51.93 -0.23 0.64 16 30 H 0.11 1.28 4.85 -51.93 -0.25 1.03 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.76 7.89 -51.93 -0.41 0.36 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.48 6.67 -51.93 -0.35 0.13 16 35 H 0.06 0.51 6.77 -51.93 -0.35 0.16 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.11 0.87 7.20 -51.93 -0.37 0.50 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.14 1.87 5.57 -52.49 -0.29 1.58 16 40 H 0.13 2.24 8.06 -52.49 -0.42 1.82 16 41 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 42 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 43 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.13 2.24 8.06 -52.48 -0.42 1.82 16 45 H 0.13 1.75 7.62 -52.49 -0.40 1.35 16 LS Contribution 360.56 15.07 5.43 5.43 Total: -1.00 -31.80 360.56 -10.54 -42.34 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.41 Total: 1.46 kcal Atomic # 6 Polarization: -28.85 SS G_CDS: -2.37 Total: -31.21 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.43 Total: -35.83 kcal Atomic # 8 Polarization: -33.29 SS G_CDS: -2.04 Total: -35.33 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 37.65 SS G_CDS: -0.55 Total: 37.10 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.80 -10.54 -42.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885088613.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.570 kcal (2) G-P(sol) polarization free energy of solvation -31.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds