Wall clock time and date at job start Tue Mar 31 2020 23:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 107.99708 * 2 1 4 4 C 1.55330 * 108.13003 * 116.78569 * 2 1 3 5 5 C 1.55187 * 108.97629 * 162.02212 * 4 2 1 6 6 O 1.39939 * 110.40803 * 37.85003 * 5 4 2 7 7 C 1.42382 * 108.64106 * 258.83494 * 6 5 4 8 8 C 1.46916 * 113.78703 * 92.60035 * 7 6 5 9 9 N 1.43422 * 107.96538 * 243.31080 * 2 1 3 10 10 S 1.65594 * 120.63700 * 328.98996 * 9 2 1 11 11 O 1.42101 * 106.40761 * 201.00188 * 10 9 2 12 12 O 1.42100 * 106.40235 * 333.92341 * 10 9 2 13 13 C 1.76207 * 107.21951 * 87.46034 * 10 9 2 14 14 C 1.38232 * 120.00119 * 269.73158 * 13 10 9 15 15 C 1.38232 * 119.99895 * 179.78664 * 14 13 10 16 16 C 1.38239 * 119.99810 * 0.44042 * 15 14 13 17 17 C 1.50701 * 119.99839 * 179.83399 * 16 15 14 18 18 C 1.50703 * 109.47026 * 269.97803 * 17 16 15 19 19 H 1.07990 * 120.00225 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99847 * 180.02562 * 18 17 16 21 21 N 1.31519 * 119.99678 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00136 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47038 * 59.99696 * 22 20 18 24 24 H 1.48494 * 109.47378 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.46932 * 300.00420 * 22 20 18 26 26 C 1.38231 * 120.00002 * 359.81032 * 16 15 14 27 27 C 1.38228 * 120.00263 * 359.97438 * 26 16 15 28 28 H 1.08997 * 109.47267 * 309.53387 * 1 2 3 29 29 H 1.08997 * 109.47428 * 69.53545 * 1 2 3 30 30 H 1.09002 * 109.47260 * 189.53748 * 1 2 3 31 31 H 1.09004 * 109.56801 * 281.89892 * 4 2 1 32 32 H 1.08993 * 109.56869 * 42.13564 * 4 2 1 33 33 H 1.09005 * 109.25581 * 158.19839 * 5 4 2 34 34 H 1.08993 * 109.25453 * 277.63626 * 5 4 2 35 35 H 1.08998 * 108.62194 * 331.48587 * 7 6 5 36 36 H 1.08997 * 108.61649 * 213.70685 * 7 6 5 37 37 H 1.09001 * 109.99065 * 183.87787 * 8 7 6 38 38 H 1.09000 * 110.07054 * 62.54974 * 8 7 6 39 39 H 1.07999 * 120.00148 * 359.97438 * 14 13 10 40 40 H 1.08001 * 120.00246 * 180.26812 * 15 14 13 41 41 H 1.08999 * 109.47200 * 29.97458 * 17 16 15 42 42 H 1.08996 * 109.47470 * 149.97562 * 17 16 15 43 43 H 0.97001 * 119.99353 * 179.97438 * 21 20 18 44 44 H 1.08004 * 119.99977 * 180.02562 * 26 16 15 45 45 H 1.07999 * 120.00171 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8667 1.0367 0.0000 4 6 2.0133 -0.6652 1.3178 5 6 3.4969 -1.0900 1.1540 6 8 4.1991 -0.1338 0.4118 7 6 4.3384 -0.6068 -0.9239 8 6 3.2684 -0.1591 -1.8256 9 7 1.9723 -0.6128 -1.2189 10 16 1.0709 -1.7983 -1.9430 11 8 1.9583 -2.5172 -2.7885 12 8 0.3125 -2.4129 -0.9103 13 6 -0.0878 -0.9988 -3.0027 14 6 -1.3326 -0.6402 -2.5203 15 6 -2.2400 -0.0091 -3.3505 16 6 -1.9058 0.2554 -4.6655 17 6 -2.8964 0.9401 -5.5716 18 6 -3.7467 -0.0960 -6.2605 19 1 -3.5861 -1.1452 -6.0618 20 6 -4.7296 0.2958 -7.1446 21 7 -4.9254 1.5737 -7.3861 22 14 -5.7831 -0.9885 -7.9991 23 1 -6.5130 -1.7867 -6.9815 24 1 -6.7593 -0.3138 -8.8918 25 1 -4.9148 -1.8860 -8.8026 26 6 -0.6629 -0.1078 -5.1493 27 6 0.2461 -0.7350 -4.3180 28 1 -0.3633 0.6541 0.7926 29 1 -0.3634 0.3593 -0.9628 30 1 -0.3634 -1.0135 0.1703 31 1 1.9256 0.0459 2.1393 32 1 1.4031 -1.5434 1.5285 33 1 3.9529 -1.1901 2.1390 34 1 3.5413 -2.0494 0.6387 35 1 4.3469 -1.6966 -0.9081 36 1 5.2935 -0.2599 -1.3181 37 1 3.3972 -0.6102 -2.8096 38 1 3.2802 0.9275 -1.9097 39 1 -1.5952 -0.8505 -1.4941 40 1 -3.2110 0.2750 -2.9725 41 1 -3.5334 1.5990 -4.9815 42 1 -2.3609 1.5259 -6.3187 43 1 -5.6166 1.8492 -8.0084 44 1 -0.4016 0.0991 -6.1766 45 1 1.2173 -1.0184 -4.6958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885088613.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:33 Heat of formation + Delta-G solvation = -98.992561 kcal Electronic energy + Delta-G solvation = -28385.854154 eV Core-core repulsion = 24495.111849 eV Total energy + Delta-G solvation = -3890.742305 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.77563 -40.29883 -38.68036 -37.18641 -36.92127 -35.62316 -34.21265 -33.37021 -32.07017 -29.94870 -29.39780 -29.18837 -25.61235 -24.94808 -23.71665 -23.46772 -22.52133 -22.29786 -19.91648 -18.94411 -18.57147 -18.26380 -17.76623 -17.26290 -16.84020 -16.64264 -16.46295 -16.07280 -15.97359 -15.67337 -15.32892 -14.79524 -14.58473 -14.52141 -14.31225 -14.03882 -13.90460 -13.65520 -13.42908 -13.41483 -13.33725 -13.23572 -13.07734 -12.72792 -12.66461 -12.61716 -12.50424 -12.15060 -12.03064 -11.81642 -11.74306 -11.67972 -11.40794 -11.31737 -10.66002 -10.54478 -10.13221 -9.96104 -9.86410 -8.28045 -6.41038 -0.69879 -0.08095 0.37346 1.37918 1.39468 1.48013 1.86556 2.33944 2.53742 2.73043 3.04545 3.06641 3.20710 3.56804 3.83459 3.91038 3.94145 3.94868 4.14276 4.15105 4.28397 4.32680 4.42409 4.43829 4.46014 4.54397 4.67906 4.71016 4.79415 4.84057 4.85642 4.89216 4.93590 5.02740 5.08971 5.11838 5.21799 5.23374 5.24685 5.31365 5.48630 5.65838 5.70863 5.84728 5.90575 6.08562 6.22206 6.70573 7.28083 8.81858 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.026027 B = 0.002793 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.559922 B =10022.289327 C =10124.603057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.159 3.841 3 H 0.092 0.908 4 C -0.161 4.161 5 C 0.046 3.954 6 O -0.363 6.363 7 C 0.029 3.971 8 C 0.087 3.913 9 N -0.986 5.986 10 S 2.714 3.286 11 O -0.982 6.982 12 O -0.972 6.972 13 C -0.702 4.702 14 C -0.021 4.021 15 C -0.156 4.156 16 C -0.002 4.002 17 C 0.049 3.951 18 C -0.536 4.536 19 H 0.054 0.946 20 C 0.010 3.990 21 N -0.925 5.925 22 Si 0.964 3.036 23 H -0.269 1.269 24 H -0.279 1.279 25 H -0.268 1.268 26 C -0.155 4.155 27 C -0.019 4.019 28 H 0.097 0.903 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.104 0.896 39 H 0.158 0.842 40 H 0.129 0.871 41 H 0.013 0.987 42 H 0.013 0.987 43 H 0.268 0.732 44 H 0.130 0.870 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.729 -2.817 16.939 25.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 C 0.052 3.948 3 H 0.111 0.889 4 C -0.201 4.201 5 C -0.031 4.031 6 O -0.280 6.280 7 C -0.049 4.049 8 C -0.036 4.036 9 N -0.826 5.826 10 S 2.806 3.194 11 O -0.972 6.972 12 O -0.963 6.963 13 C -0.789 4.789 14 C -0.040 4.040 15 C -0.175 4.175 16 C -0.003 4.003 17 C 0.012 3.988 18 C -0.573 4.573 19 H 0.072 0.928 20 C -0.189 4.189 21 N -0.564 5.564 22 Si 0.788 3.212 23 H -0.194 1.194 24 H -0.204 1.204 25 H -0.193 1.193 26 C -0.174 4.174 27 C -0.038 4.038 28 H 0.115 0.885 29 H 0.084 0.916 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.122 0.878 39 H 0.176 0.824 40 H 0.147 0.853 41 H 0.031 0.969 42 H 0.032 0.968 43 H 0.077 0.923 44 H 0.148 0.852 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 18.792 -3.389 17.022 25.581 hybrid contribution -1.583 0.127 -1.279 2.039 sum 17.209 -3.262 15.743 23.551 Atomic orbital electron populations 1.23492 0.95634 1.06268 1.04613 1.20421 0.93375 0.98008 0.83040 0.88945 1.23492 0.96708 1.02475 0.97383 1.22802 0.91835 0.91014 0.97493 1.87729 1.75031 1.44390 1.20884 1.22021 0.99671 0.99380 0.83783 1.21958 0.80517 1.03178 0.97952 1.57687 1.33410 1.58342 1.33121 1.01242 0.72581 0.72988 0.72568 1.93506 1.64826 1.69853 1.69039 1.93480 1.72143 1.74649 1.55980 1.30853 1.14057 1.23127 1.10879 1.21167 0.91011 0.91666 1.00127 1.21308 1.00465 1.02054 0.93696 1.20818 0.94064 0.91074 0.94308 1.18254 0.92391 0.95006 0.93152 1.21266 1.17565 0.93018 1.25500 0.92792 1.25867 0.98385 0.97499 0.97147 1.70051 1.33787 1.16416 1.36188 0.85518 0.78382 0.78813 0.78497 1.19364 1.20356 1.19334 1.21300 0.93853 1.01554 1.00691 1.21015 0.99605 0.91951 0.91269 0.88452 0.91627 0.88537 0.88412 0.90595 0.88848 0.93113 0.92325 0.86534 0.86812 0.87771 0.82436 0.85272 0.96884 0.96838 0.92347 0.85167 0.82658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.62 6.80 71.98 0.49 -4.13 16 2 C 0.16 2.78 2.25 46.36 0.10 2.89 16 3 H 0.09 1.47 7.99 -2.39 -0.02 1.45 16 4 C -0.16 -2.45 6.06 32.14 0.19 -2.25 16 5 C 0.05 0.68 6.40 72.73 0.47 1.15 16 6 O -0.36 -5.87 10.25 -140.17 -1.44 -7.31 16 7 C 0.03 0.40 6.01 70.09 0.42 0.82 16 8 C 0.09 1.27 6.28 83.78 0.53 1.80 16 9 N -0.99 -19.10 2.82 -496.80 -1.40 -20.50 16 10 S 2.71 70.56 5.12 -56.49 -0.29 70.27 16 11 O -0.98 -28.81 16.00 -128.00 -2.05 -30.85 16 12 O -0.97 -28.18 13.89 -128.00 -1.78 -29.95 16 13 C -0.70 -21.05 5.54 22.27 0.12 -20.92 16 14 C -0.02 -0.65 7.24 22.27 0.16 -0.49 16 15 C -0.16 -5.84 9.70 22.27 0.22 -5.62 16 16 C 0.00 -0.10 5.07 -19.87 -0.10 -0.20 16 17 C 0.05 2.51 5.10 29.10 0.15 2.66 16 18 C -0.54 -29.86 9.09 25.60 0.23 -29.62 16 19 H 0.05 2.98 7.74 -2.92 -0.02 2.96 16 20 C 0.01 0.57 5.46 84.65 0.46 1.03 16 21 N -0.93 -54.22 13.29 21.45 0.28 -53.93 16 22 Si 0.96 43.52 29.54 68.60 2.03 45.54 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 24 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 26 C -0.16 -5.76 9.70 22.27 0.22 -5.55 16 27 C -0.02 -0.60 9.52 22.27 0.21 -0.39 16 28 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.07 1.39 4.51 -2.39 -0.01 1.38 16 30 H 0.10 2.11 4.85 -2.39 -0.01 2.10 16 31 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.08 1.26 7.89 -2.39 -0.02 1.24 16 33 H 0.09 1.07 8.14 -2.38 -0.02 1.06 16 34 H 0.05 0.79 6.67 -2.39 -0.02 0.77 16 35 H 0.06 0.83 6.77 -2.39 -0.02 0.82 16 36 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.11 1.53 7.20 -2.39 -0.02 1.51 16 38 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.16 4.16 5.57 -2.91 -0.02 4.15 16 40 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 41 H 0.01 0.70 8.09 -2.39 -0.02 0.68 16 42 H 0.01 0.72 8.09 -2.39 -0.02 0.70 16 43 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 44 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 45 H 0.16 3.91 7.62 -2.91 -0.02 3.88 16 Total: -1.00 -68.72 360.56 0.23 -68.49 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 1.00 Total: 17.10 kcal Atomic # 6 Polarization: -62.72 SS G_CDS: 3.87 Total: -58.85 kcal Atomic # 7 Polarization: -73.31 SS G_CDS: -1.12 Total: -74.43 kcal Atomic # 8 Polarization: -62.85 SS G_CDS: -5.26 Total: -68.11 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: 70.56 SS G_CDS: -0.29 Total: 70.27 kcal Total: -68.72 0.23 -68.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885088613.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.506 kcal (2) G-P(sol) polarization free energy of solvation -68.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds