Wall clock time and date at job start Tue Mar 31 2020 23:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.99783 * 2 1 4 4 O 1.44055 * 109.92605 * 121.25442 * 2 1 3 5 5 C 1.44379 * 106.98231 * 145.97191 * 4 2 1 6 6 C 1.54990 * 103.49245 * 319.86040 * 5 4 2 7 7 C 1.54100 * 109.87892 * 238.91626 * 2 1 3 8 8 C 1.53004 * 110.48743 * 357.22278 * 7 2 1 9 9 N 1.46500 * 110.49355 * 119.73643 * 7 2 1 10 10 S 1.65598 * 120.00562 * 185.82354 * 9 7 2 11 11 O 1.42094 * 106.39921 * 51.39246 * 10 9 7 12 12 O 1.42097 * 106.40186 * 184.31116 * 10 9 7 13 13 C 1.76198 * 107.21820 * 297.85319 * 10 9 7 14 14 C 1.38235 * 119.99895 * 275.98366 * 13 10 9 15 15 C 1.38237 * 120.00293 * 179.78962 * 14 13 10 16 16 C 1.38241 * 119.99669 * 0.45813 * 15 14 13 17 17 C 1.50693 * 120.00039 * 179.79086 * 16 15 14 18 18 C 1.50694 * 109.47380 * 269.97533 * 17 16 15 19 19 H 1.08001 * 119.99863 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00326 * 179.97438 * 18 17 16 21 21 N 1.31515 * 120.00025 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99697 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.46971 * 89.99373 * 22 20 18 24 24 H 1.48498 * 109.46949 * 209.99306 * 22 20 18 25 25 H 1.48496 * 109.47147 * 329.99666 * 22 20 18 26 26 C 1.38239 * 119.99681 * 359.76877 * 16 15 14 27 27 C 1.38231 * 120.00070 * 96.25280 * 13 10 9 28 28 H 1.09000 * 109.47545 * 181.08423 * 1 2 3 29 29 H 1.09005 * 109.46852 * 301.08770 * 1 2 3 30 30 H 1.09000 * 109.47017 * 61.07589 * 1 2 3 31 31 H 1.08995 * 110.62090 * 201.35455 * 5 4 2 32 32 H 1.09007 * 110.75163 * 78.42300 * 5 4 2 33 33 H 1.09001 * 110.90784 * 278.82343 * 6 5 4 34 34 H 1.08999 * 110.94158 * 155.23240 * 6 5 4 35 35 H 1.09000 * 109.47426 * 189.02903 * 8 7 2 36 36 H 1.09002 * 109.46790 * 69.03058 * 8 7 2 37 37 H 1.08993 * 109.47073 * 309.03387 * 8 7 2 38 38 H 0.97001 * 119.99190 * 5.82766 * 9 7 2 39 39 H 1.08005 * 120.00443 * 359.97438 * 14 13 10 40 40 H 1.08000 * 120.00484 * 180.25062 * 15 14 13 41 41 H 1.08998 * 109.47345 * 29.97985 * 17 16 15 42 42 H 1.09002 * 109.47002 * 149.97446 * 17 16 15 43 43 H 0.97001 * 119.99701 * 180.02562 * 21 20 18 44 44 H 1.07998 * 119.99660 * 179.97438 * 26 16 15 45 45 H 1.08000 * 119.99923 * 359.97438 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 8 2.0209 -0.7027 1.1578 5 6 3.2405 -1.3666 0.7623 6 6 2.9215 -1.8915 -0.6606 7 6 2.0539 -0.7482 -1.2411 8 6 0.8897 -1.3190 -2.0534 9 7 2.8684 0.1428 -2.0712 10 16 3.4315 -0.3777 -3.5389 11 8 2.3067 -0.8863 -4.2426 12 8 4.2586 0.6620 -4.0430 13 6 4.4906 -1.7524 -3.2336 14 6 5.8147 -1.5431 -2.8962 15 6 6.6447 -2.6214 -2.6525 16 6 6.1528 -3.9093 -2.7553 17 6 7.0587 -5.0849 -2.4942 18 6 7.7203 -5.5050 -3.7813 19 1 7.5065 -4.9734 -4.6969 20 6 8.5993 -6.5672 -3.7900 21 7 9.1771 -6.9334 -4.9133 22 14 8.9696 -7.4860 -2.2063 23 1 8.0067 -8.6052 -2.0467 24 1 10.3519 -8.0260 -2.2590 25 1 8.8444 -6.5573 -1.0544 26 6 4.8298 -4.1186 -3.0973 27 6 3.9989 -3.0401 -3.3369 28 1 -0.3634 -1.0275 0.0194 29 1 -0.3633 0.5307 0.8801 30 1 -0.3633 0.4970 -0.8995 31 1 3.4628 -2.1942 1.4359 32 1 4.0720 -0.6623 0.7341 33 1 2.3571 -2.8229 -0.6142 34 1 3.8344 -2.0206 -1.2420 35 1 1.2775 -1.9757 -2.8322 36 1 0.3315 -0.5025 -2.5115 37 1 0.2308 -1.8853 -1.3954 38 1 3.0780 1.0376 -1.7609 39 1 6.2002 -0.5371 -2.8202 40 1 7.6781 -2.4579 -2.3849 41 1 7.8216 -4.8017 -1.7690 42 1 6.4724 -5.9147 -2.0994 43 1 9.7952 -7.6809 -4.9194 44 1 4.4457 -5.1247 -3.1781 45 1 2.9654 -3.2036 -3.6044 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885102300.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:33 Heat of formation + Delta-G solvation = -90.404635 kcal Electronic energy + Delta-G solvation = -28518.606781 eV Core-core repulsion = 24628.236876 eV Total energy + Delta-G solvation = -3890.369905 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.48444 -39.02657 -37.29078 -35.89124 -35.59084 -33.78697 -32.27948 -31.82411 -30.96832 -30.63578 -28.04569 -27.76353 -25.13860 -23.60878 -22.70169 -22.43704 -20.79380 -20.30284 -19.27272 -17.95865 -17.79663 -16.95363 -16.86199 -16.09376 -15.78836 -15.52505 -15.15419 -14.73880 -14.48011 -14.37671 -14.20835 -13.97195 -13.34509 -13.30215 -13.20958 -12.96876 -12.75972 -12.69348 -12.45169 -12.24946 -12.10106 -11.96011 -11.85754 -11.69435 -11.59806 -11.32661 -11.20531 -10.99423 -10.96311 -10.78051 -10.57331 -10.26052 -10.16357 -9.97281 -9.78905 -9.57499 -8.74816 -8.70940 -8.48791 -6.22219 -4.24132 0.39273 1.16457 1.64840 2.88052 3.17216 3.25957 3.26297 3.51552 3.66039 3.98097 4.04282 4.27076 4.36431 4.41161 4.47869 4.72457 4.86258 4.92628 5.01990 5.04346 5.10798 5.13456 5.28547 5.34829 5.42742 5.47924 5.51156 5.62368 5.67696 5.71036 5.74597 5.77720 5.84044 5.88870 6.06650 6.13513 6.19495 6.36153 6.56983 6.63005 6.63619 6.72527 6.76036 7.20604 7.23801 7.49149 8.30317 8.81245 9.35848 10.90268 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016678 B = 0.003381 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.448013 B = 8280.304052 C = 9193.304196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.081 3.919 3 H 0.075 0.925 4 O -0.372 6.372 5 C 0.050 3.950 6 C -0.191 4.191 7 C 0.151 3.849 8 C -0.173 4.173 9 N -1.109 6.109 10 S 2.697 3.303 11 O -0.957 6.957 12 O -0.965 6.965 13 C -0.702 4.702 14 C -0.021 4.021 15 C -0.142 4.142 16 C 0.033 3.967 17 C 0.006 3.994 18 C -0.521 4.521 19 H 0.075 0.925 20 C 0.073 3.927 21 N -0.894 5.894 22 Si 0.879 3.121 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.265 1.265 26 C -0.142 4.142 27 C -0.022 4.022 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.416 0.584 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.034 0.966 42 H 0.030 0.970 43 H 0.267 0.733 44 H 0.130 0.870 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.068 13.583 11.357 23.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.021 3.979 3 H 0.092 0.908 4 O -0.291 6.291 5 C -0.026 4.026 6 C -0.230 4.230 7 C 0.062 3.938 8 C -0.232 4.232 9 N -0.868 5.868 10 S 2.789 3.211 11 O -0.947 6.947 12 O -0.955 6.955 13 C -0.791 4.791 14 C -0.041 4.041 15 C -0.161 4.161 16 C 0.033 3.967 17 C -0.031 4.031 18 C -0.559 4.559 19 H 0.093 0.907 20 C -0.130 4.130 21 N -0.531 5.531 22 Si 0.706 3.294 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.189 1.189 26 C -0.161 4.161 27 C -0.041 4.041 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.124 0.876 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.251 0.749 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.052 0.948 42 H 0.048 0.952 43 H 0.077 0.923 44 H 0.148 0.852 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -16.293 13.647 10.595 23.748 hybrid contribution 1.119 -0.744 0.971 1.658 sum -15.174 12.903 11.566 23.033 Atomic orbital electron populations 1.22067 0.92979 1.03437 1.02579 1.22958 0.95627 0.95449 0.83828 0.90769 1.88959 1.39881 1.67655 1.32583 1.23502 0.87407 0.96570 0.95134 1.24117 1.02409 0.98653 0.97777 1.21499 0.91038 0.89563 0.91700 1.22664 0.97329 1.02692 1.00469 1.55739 1.66801 1.24440 1.39777 1.01650 0.73605 0.73614 0.72196 1.93565 1.50242 1.80821 1.70095 1.93580 1.69101 1.55790 1.77021 1.30315 1.10395 1.15334 1.23058 1.20738 0.91258 0.99521 0.92568 1.21221 1.00119 0.92036 1.02716 1.20709 0.93572 0.95822 0.86587 1.18986 0.94131 0.91169 0.98830 1.20809 1.25633 1.15966 0.93477 0.90669 1.24988 0.95172 0.96593 0.96251 1.69887 1.29287 1.27803 1.26146 0.86792 0.78019 0.80476 0.84138 1.20009 1.21052 1.18943 1.21228 0.93882 0.99033 1.01950 1.20808 0.99646 0.90846 0.92831 0.91027 0.91898 0.90659 0.88596 0.91895 0.88850 0.87623 0.89607 0.90816 0.90463 0.74885 0.85277 0.85217 0.94812 0.95216 0.92331 0.85175 0.84907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 8.40 37.15 0.31 -0.75 16 2 C 0.08 0.67 3.87 -26.16 -0.10 0.57 16 3 H 0.07 0.54 7.48 -51.93 -0.39 0.15 16 4 O -0.37 -3.79 11.20 -35.23 -0.39 -4.19 16 5 C 0.05 0.46 7.72 38.21 0.29 0.76 16 6 C -0.19 -1.83 5.69 -24.72 -0.14 -1.97 16 7 C 0.15 1.36 1.10 -130.29 -0.14 1.22 16 8 C -0.17 -1.57 6.22 37.16 0.23 -1.34 16 9 N -1.11 -10.25 5.59 1.77 0.01 -10.24 16 10 S 2.70 34.69 5.64 -107.50 -0.61 34.08 16 11 O -0.96 -13.86 13.86 -57.18 -0.79 -14.66 16 12 O -0.96 -15.05 17.45 -57.18 -1.00 -16.05 16 13 C -0.70 -9.98 3.58 -39.59 -0.14 -10.13 16 14 C -0.02 -0.32 9.34 -39.58 -0.37 -0.69 16 15 C -0.14 -2.40 9.70 -39.58 -0.38 -2.79 16 16 C 0.03 0.63 5.07 -104.62 -0.53 0.10 16 17 C 0.01 0.13 4.17 -29.04 -0.12 0.01 16 18 C -0.52 -14.01 9.65 -34.44 -0.33 -14.35 16 19 H 0.08 2.24 7.98 -52.49 -0.42 1.82 16 20 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 21 N -0.89 -26.48 13.96 55.43 0.77 -25.71 16 22 Si 0.88 20.27 27.47 -169.99 -4.67 15.60 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 26 C -0.14 -2.37 9.70 -39.58 -0.38 -2.75 16 27 C -0.02 -0.32 8.06 -39.58 -0.32 -0.64 16 28 H 0.07 0.49 6.49 -51.93 -0.34 0.15 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.44 7.08 -51.93 -0.37 0.07 16 31 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.09 0.84 7.87 -51.93 -0.41 0.43 16 34 H 0.11 1.13 3.96 -51.93 -0.21 0.92 16 35 H 0.09 0.89 5.50 -51.93 -0.29 0.60 16 36 H 0.07 0.64 7.26 -51.93 -0.38 0.26 16 37 H 0.08 0.57 6.27 -51.93 -0.33 0.25 16 38 H 0.42 2.92 8.25 -34.47 -0.28 2.64 16 39 H 0.13 1.64 7.76 -52.48 -0.41 1.23 16 40 H 0.13 2.08 8.06 -52.49 -0.42 1.66 16 41 H 0.03 0.72 7.14 -51.93 -0.37 0.35 16 42 H 0.03 0.63 7.51 -51.93 -0.39 0.24 16 43 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.13 2.05 8.06 -52.49 -0.42 1.63 16 45 H 0.13 1.66 6.83 -52.49 -0.36 1.30 16 LS Contribution 359.89 15.07 5.42 5.42 Total: -1.00 -33.02 359.89 -9.69 -42.71 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -6.21 Total: 3.86 kcal Atomic # 6 Polarization: -28.60 SS G_CDS: -2.23 Total: -30.83 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.78 Total: -35.95 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -2.18 Total: -34.89 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.67 Total: 15.60 kcal Atomic # 16 Polarization: 34.69 SS G_CDS: -0.61 Total: 34.08 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.02 -9.69 -42.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885102300.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.697 kcal (2) G-P(sol) polarization free energy of solvation -33.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds