Wall clock time and date at job start Tue Mar 31 2020 23:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.99783 * 2 1 4 4 O 1.44055 * 109.92605 * 121.25442 * 2 1 3 5 5 C 1.44379 * 106.98231 * 145.97191 * 4 2 1 6 6 C 1.54990 * 103.49245 * 319.86040 * 5 4 2 7 7 C 1.54100 * 109.87892 * 238.91626 * 2 1 3 8 8 C 1.53004 * 110.48743 * 357.22278 * 7 2 1 9 9 N 1.46500 * 110.49355 * 119.73643 * 7 2 1 10 10 S 1.65598 * 120.00562 * 185.82354 * 9 7 2 11 11 O 1.42094 * 106.39921 * 51.39246 * 10 9 7 12 12 O 1.42097 * 106.40186 * 184.31116 * 10 9 7 13 13 C 1.76198 * 107.21820 * 297.85319 * 10 9 7 14 14 C 1.38235 * 119.99895 * 275.98366 * 13 10 9 15 15 C 1.38237 * 120.00293 * 179.78962 * 14 13 10 16 16 C 1.38241 * 119.99669 * 0.45813 * 15 14 13 17 17 C 1.50693 * 120.00039 * 179.79086 * 16 15 14 18 18 C 1.50694 * 109.47380 * 269.97533 * 17 16 15 19 19 H 1.08001 * 119.99863 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00326 * 179.97438 * 18 17 16 21 21 N 1.31515 * 120.00025 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99697 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.46971 * 89.99373 * 22 20 18 24 24 H 1.48498 * 109.46949 * 209.99306 * 22 20 18 25 25 H 1.48496 * 109.47147 * 329.99666 * 22 20 18 26 26 C 1.38239 * 119.99681 * 359.76877 * 16 15 14 27 27 C 1.38231 * 120.00070 * 96.25280 * 13 10 9 28 28 H 1.09000 * 109.47545 * 181.08423 * 1 2 3 29 29 H 1.09005 * 109.46852 * 301.08770 * 1 2 3 30 30 H 1.09000 * 109.47017 * 61.07589 * 1 2 3 31 31 H 1.08995 * 110.62090 * 201.35455 * 5 4 2 32 32 H 1.09007 * 110.75163 * 78.42300 * 5 4 2 33 33 H 1.09001 * 110.90784 * 278.82343 * 6 5 4 34 34 H 1.08999 * 110.94158 * 155.23240 * 6 5 4 35 35 H 1.09000 * 109.47426 * 189.02903 * 8 7 2 36 36 H 1.09002 * 109.46790 * 69.03058 * 8 7 2 37 37 H 1.08993 * 109.47073 * 309.03387 * 8 7 2 38 38 H 0.97001 * 119.99190 * 5.82766 * 9 7 2 39 39 H 1.08005 * 120.00443 * 359.97438 * 14 13 10 40 40 H 1.08000 * 120.00484 * 180.25062 * 15 14 13 41 41 H 1.08998 * 109.47345 * 29.97985 * 17 16 15 42 42 H 1.09002 * 109.47002 * 149.97446 * 17 16 15 43 43 H 0.97001 * 119.99701 * 180.02562 * 21 20 18 44 44 H 1.07998 * 119.99660 * 179.97438 * 26 16 15 45 45 H 1.08000 * 119.99923 * 359.97438 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 8 2.0209 -0.7027 1.1578 5 6 3.2405 -1.3666 0.7623 6 6 2.9215 -1.8915 -0.6606 7 6 2.0539 -0.7482 -1.2411 8 6 0.8897 -1.3190 -2.0534 9 7 2.8684 0.1428 -2.0712 10 16 3.4315 -0.3777 -3.5389 11 8 2.3067 -0.8863 -4.2426 12 8 4.2586 0.6620 -4.0430 13 6 4.4906 -1.7524 -3.2336 14 6 5.8147 -1.5431 -2.8962 15 6 6.6447 -2.6214 -2.6525 16 6 6.1528 -3.9093 -2.7553 17 6 7.0587 -5.0849 -2.4942 18 6 7.7203 -5.5050 -3.7813 19 1 7.5065 -4.9734 -4.6969 20 6 8.5993 -6.5672 -3.7900 21 7 9.1771 -6.9334 -4.9133 22 14 8.9696 -7.4860 -2.2063 23 1 8.0067 -8.6052 -2.0467 24 1 10.3519 -8.0260 -2.2590 25 1 8.8444 -6.5573 -1.0544 26 6 4.8298 -4.1186 -3.0973 27 6 3.9989 -3.0401 -3.3369 28 1 -0.3634 -1.0275 0.0194 29 1 -0.3633 0.5307 0.8801 30 1 -0.3633 0.4970 -0.8995 31 1 3.4628 -2.1942 1.4359 32 1 4.0720 -0.6623 0.7341 33 1 2.3571 -2.8229 -0.6142 34 1 3.8344 -2.0206 -1.2420 35 1 1.2775 -1.9757 -2.8322 36 1 0.3315 -0.5025 -2.5115 37 1 0.2308 -1.8853 -1.3954 38 1 3.0780 1.0376 -1.7609 39 1 6.2002 -0.5371 -2.8202 40 1 7.6781 -2.4579 -2.3849 41 1 7.8216 -4.8017 -1.7690 42 1 6.4724 -5.9147 -2.0994 43 1 9.7952 -7.6809 -4.9194 44 1 4.4457 -5.1247 -3.1781 45 1 2.9654 -3.2036 -3.6044 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885102300.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:32 Heat of formation + Delta-G solvation = -113.927820 kcal Electronic energy + Delta-G solvation = -28519.626822 eV Core-core repulsion = 24628.236876 eV Total energy + Delta-G solvation = -3891.389947 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.21258 -40.28499 -38.40988 -37.01115 -36.38791 -35.56603 -33.62465 -32.86811 -32.04298 -31.60056 -29.71400 -28.43569 -25.78910 -25.30343 -23.79224 -23.34805 -22.29185 -21.04375 -20.29865 -19.03348 -18.89601 -18.80727 -17.77061 -16.88201 -16.75349 -16.66982 -16.36016 -16.00247 -15.84512 -15.40283 -15.19110 -15.01739 -14.63216 -14.48314 -14.21556 -14.02645 -13.97040 -13.63712 -13.57388 -13.47576 -13.30453 -13.21139 -13.05640 -12.62935 -12.55689 -12.40223 -12.26482 -12.14191 -12.02526 -11.89629 -11.82223 -11.70145 -11.55903 -11.49423 -10.82938 -10.65350 -10.60577 -9.96226 -9.87596 -8.33890 -6.41084 -0.66686 -0.09833 0.39232 1.36101 1.37861 1.48985 1.91125 2.32251 2.50816 2.73674 2.90387 3.00839 3.25675 3.43398 3.70060 3.79182 3.84172 3.95786 4.03566 4.08008 4.16428 4.25529 4.42207 4.46302 4.47222 4.67096 4.73051 4.76464 4.78732 4.84975 4.86767 4.94211 5.00367 5.08393 5.08541 5.10875 5.16937 5.20209 5.25594 5.30247 5.49468 5.52157 5.78391 5.91203 5.92392 6.04041 6.18721 6.65955 7.23008 8.82579 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016678 B = 0.003381 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.448013 B = 8280.304052 C = 9193.304196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.079 3.921 3 H 0.087 0.913 4 O -0.386 6.386 5 C 0.048 3.952 6 C -0.194 4.194 7 C 0.151 3.849 8 C -0.178 4.178 9 N -1.092 6.092 10 S 2.720 3.280 11 O -0.970 6.970 12 O -0.989 6.989 13 C -0.697 4.697 14 C -0.020 4.020 15 C -0.152 4.152 16 C 0.002 3.998 17 C 0.011 3.989 18 C -0.525 4.525 19 H 0.027 0.973 20 C 0.009 3.991 21 N -0.948 5.948 22 Si 0.952 3.048 23 H -0.264 1.264 24 H -0.285 1.285 25 H -0.241 1.241 26 C -0.150 4.150 27 C -0.017 4.017 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.429 0.571 39 H 0.152 0.848 40 H 0.132 0.868 41 H 0.040 0.960 42 H 0.040 0.960 43 H 0.269 0.731 44 H 0.134 0.866 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.719 14.628 13.572 26.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.020 3.980 3 H 0.105 0.895 4 O -0.306 6.306 5 C -0.028 4.028 6 C -0.233 4.233 7 C 0.062 3.938 8 C -0.236 4.236 9 N -0.855 5.855 10 S 2.811 3.189 11 O -0.960 6.960 12 O -0.980 6.980 13 C -0.785 4.785 14 C -0.040 4.040 15 C -0.171 4.171 16 C 0.002 3.998 17 C -0.026 4.026 18 C -0.563 4.563 19 H 0.045 0.955 20 C -0.188 4.188 21 N -0.588 5.588 22 Si 0.775 3.225 23 H -0.189 1.189 24 H -0.211 1.211 25 H -0.164 1.164 26 C -0.169 4.169 27 C -0.036 4.036 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.119 0.881 32 H 0.086 0.914 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.267 0.733 39 H 0.169 0.831 40 H 0.150 0.850 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.078 0.922 44 H 0.152 0.848 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -17.946 14.709 12.821 26.510 hybrid contribution 1.522 -0.941 0.224 1.803 sum -16.425 13.768 13.045 25.090 Atomic orbital electron populations 1.22102 0.91867 1.03741 1.03395 1.23091 0.96524 0.95693 0.82726 0.89530 1.88952 1.40203 1.67958 1.33442 1.23560 0.87373 0.96895 0.94961 1.24124 1.02024 0.99181 0.97970 1.21582 0.90832 0.89442 0.91899 1.22723 0.97584 1.02863 1.00472 1.55400 1.66230 1.25094 1.38781 1.00940 0.72820 0.72572 0.72594 1.93556 1.50326 1.80963 1.71167 1.93549 1.69880 1.56352 1.78183 1.30679 1.10574 1.15984 1.21235 1.20968 0.91274 0.99976 0.91742 1.21318 1.00655 0.92035 1.03063 1.20552 0.94204 0.95506 0.89562 1.18825 0.94678 0.92872 0.96207 1.21074 1.25788 1.15346 0.94123 0.95502 1.26005 0.94939 0.97732 1.00168 1.70059 1.30705 1.28969 1.29063 0.85628 0.77712 0.79365 0.79798 1.18869 1.21133 1.16401 1.21327 0.93500 1.00031 1.02029 1.21015 1.00357 0.90385 0.91805 0.90991 0.91523 0.89458 0.88091 0.91407 0.88379 0.88755 0.90937 0.90349 0.88830 0.73287 0.83066 0.84979 0.94156 0.94158 0.92247 0.84784 0.82751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.40 71.98 0.60 -1.09 16 2 C 0.08 1.10 3.87 30.96 0.12 1.22 16 3 H 0.09 0.99 7.48 -2.39 -0.02 0.97 16 4 O -0.39 -6.96 11.20 -148.98 -1.67 -8.63 16 5 C 0.05 0.79 7.72 72.66 0.56 1.35 16 6 C -0.19 -3.31 5.69 31.89 0.18 -3.13 16 7 C 0.15 2.34 1.10 4.60 0.01 2.34 16 8 C -0.18 -2.77 6.22 71.98 0.45 -2.32 16 9 N -1.09 -17.43 5.59 -148.30 -0.83 -18.26 16 10 S 2.72 64.71 5.64 -56.49 -0.32 64.39 16 11 O -0.97 -26.22 13.86 -128.00 -1.77 -27.99 16 12 O -0.99 -29.10 17.45 -128.00 -2.23 -31.33 16 13 C -0.70 -18.83 3.58 22.27 0.08 -18.75 16 14 C -0.02 -0.58 9.34 22.27 0.21 -0.38 16 15 C -0.15 -5.10 9.70 22.27 0.22 -4.88 16 16 C 0.00 0.08 5.07 -19.87 -0.10 -0.02 16 17 C 0.01 0.49 4.17 29.10 0.12 0.61 16 18 C -0.53 -29.18 9.65 25.60 0.25 -28.93 16 19 H 0.03 1.69 7.98 -2.91 -0.02 1.67 16 20 C 0.01 0.51 5.47 84.66 0.46 0.97 16 21 N -0.95 -58.23 13.96 21.45 0.30 -57.93 16 22 Si 0.95 41.75 27.47 68.60 1.88 43.63 16 23 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 24 H -0.29 -12.46 7.11 99.48 0.71 -11.76 16 25 H -0.24 -9.53 6.54 99.48 0.65 -8.88 16 26 C -0.15 -4.96 9.70 22.27 0.22 -4.74 16 27 C -0.02 -0.46 8.06 22.27 0.18 -0.28 16 28 H 0.07 0.79 6.49 -2.39 -0.02 0.77 16 29 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.09 0.75 7.08 -2.39 -0.02 0.73 16 31 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.10 1.57 7.87 -2.39 -0.02 1.55 16 34 H 0.09 1.84 3.96 -2.39 -0.01 1.83 16 35 H 0.07 1.34 5.50 -2.39 -0.01 1.33 16 36 H 0.08 1.14 7.26 -2.39 -0.02 1.13 16 37 H 0.09 1.13 6.27 -2.39 -0.01 1.12 16 38 H 0.43 4.79 8.25 -96.74 -0.80 4.00 16 39 H 0.15 3.57 7.76 -2.91 -0.02 3.55 16 40 H 0.13 4.24 8.06 -2.91 -0.02 4.21 16 41 H 0.04 1.69 7.14 -2.39 -0.02 1.67 16 42 H 0.04 1.66 7.51 -2.39 -0.02 1.64 16 43 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 44 H 0.13 4.20 8.06 -2.91 -0.02 4.17 16 45 H 0.15 3.59 6.83 -2.91 -0.02 3.57 16 Total: -1.00 -72.57 359.89 -0.92 -73.49 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.17 Total: 20.66 kcal Atomic # 6 Polarization: -61.58 SS G_CDS: 3.55 Total: -58.03 kcal Atomic # 7 Polarization: -75.66 SS G_CDS: -0.53 Total: -76.19 kcal Atomic # 8 Polarization: -62.28 SS G_CDS: -5.68 Total: -67.95 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 1.88 Total: 43.63 kcal Atomic # 16 Polarization: 64.71 SS G_CDS: -0.32 Total: 64.39 kcal Total: -72.57 -0.92 -73.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885102300.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.438 kcal (2) G-P(sol) polarization free energy of solvation -72.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds