Wall clock time and date at job start Tue Mar 31 2020 23:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.99709 * 2 1 4 4 O 1.43751 * 109.88073 * 121.08828 * 2 1 3 5 5 C 1.44374 * 106.97583 * 145.93169 * 4 2 1 6 6 C 1.54994 * 103.49229 * 319.93884 * 5 4 2 7 7 C 1.54102 * 109.87500 * 238.91415 * 2 1 3 8 8 C 1.53004 * 110.48715 * 119.73933 * 7 2 1 9 9 N 1.46496 * 110.48884 * 357.22717 * 7 2 1 10 10 S 1.65607 * 120.00127 * 179.97438 * 9 7 2 11 11 O 1.42107 * 106.40053 * 311.46118 * 10 9 7 12 12 O 1.42099 * 106.40001 * 178.53996 * 10 9 7 13 13 C 1.76198 * 107.21643 * 64.99603 * 10 9 7 14 14 C 1.38235 * 119.99504 * 90.00277 * 13 10 9 15 15 C 1.38243 * 119.99602 * 179.97438 * 14 13 10 16 16 C 1.38232 * 120.00069 * 0.09581 * 15 14 13 17 17 C 1.50701 * 119.99886 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.47321 * 269.91134 * 17 16 15 19 19 H 1.07998 * 119.99890 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99830 * 180.02562 * 18 17 16 21 21 N 1.31505 * 120.00413 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99841 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47236 * 59.99063 * 22 20 18 24 24 H 1.48499 * 109.47469 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47081 * 299.99875 * 22 20 18 26 26 C 1.38234 * 119.99866 * 359.86117 * 16 15 14 27 27 C 1.38230 * 120.00170 * 269.97984 * 13 10 9 28 28 H 1.09002 * 109.47679 * 181.08263 * 1 2 3 29 29 H 1.09010 * 109.46771 * 301.08494 * 1 2 3 30 30 H 1.09004 * 109.47365 * 61.07911 * 1 2 3 31 31 H 1.09002 * 110.62004 * 78.44177 * 5 4 2 32 32 H 1.09000 * 110.61698 * 201.28152 * 5 4 2 33 33 H 1.09000 * 110.91080 * 278.82421 * 6 5 4 34 34 H 1.09006 * 110.90525 * 155.22076 * 6 5 4 35 35 H 1.09000 * 109.47320 * 298.15900 * 8 7 2 36 36 H 1.09004 * 109.46989 * 58.15798 * 8 7 2 37 37 H 1.08991 * 109.47479 * 178.15518 * 8 7 2 38 38 H 0.96998 * 120.00240 * 359.97438 * 9 7 2 39 39 H 1.08000 * 120.00616 * 359.70285 * 14 13 10 40 40 H 1.08001 * 119.99556 * 179.97438 * 15 14 13 41 41 H 1.09007 * 109.47270 * 29.90821 * 17 16 15 42 42 H 1.09000 * 109.46792 * 149.90515 * 17 16 15 43 43 H 0.97006 * 120.00246 * 180.02562 * 21 20 18 44 44 H 1.08000 * 119.99729 * 180.02562 * 26 16 15 45 45 H 1.08001 * 120.00371 * 0.02562 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0188 -0.6980 1.1577 5 6 3.2378 -1.3643 0.7646 6 6 2.9193 -1.8916 -0.6577 7 6 2.0539 -0.7483 -1.2411 8 6 2.9046 0.1823 -2.1080 9 7 0.9392 -1.2947 -2.0189 10 16 1.2373 -2.1466 -3.4074 11 8 2.1497 -1.3669 -4.1684 12 8 -0.0279 -2.5646 -3.9011 13 6 2.1000 -3.6117 -2.9453 14 6 1.3955 -4.7601 -2.6361 15 6 2.0724 -5.9098 -2.2740 16 6 3.4536 -5.9105 -2.2193 17 6 4.1914 -7.1637 -1.8240 18 6 4.3855 -7.1822 -0.3297 19 1 4.0123 -6.3678 0.2735 20 6 5.0404 -8.2384 0.2673 21 7 5.4953 -9.2299 -0.4671 22 14 5.2816 -8.2611 2.1196 23 1 3.9576 -8.2337 2.7916 24 1 6.0085 -9.4960 2.5091 25 1 6.0699 -7.0716 2.5307 26 6 4.1581 -4.7623 -2.5294 27 6 3.4813 -3.6129 -2.8924 28 1 -0.3634 -1.0275 0.0194 29 1 -0.3633 0.5307 0.8802 30 1 -0.3634 0.4970 -0.8995 31 1 4.0685 -0.6591 0.7355 32 1 3.4598 -2.1892 1.4416 33 1 2.3537 -2.8221 -0.6100 34 1 3.8330 -2.0226 -1.2375 35 1 2.2915 1.0117 -2.4606 36 1 3.7353 0.5697 -1.5181 37 1 3.2930 -0.3715 -2.9626 38 1 0.0264 -1.1576 -1.7206 39 1 0.3161 -4.7580 -2.6730 40 1 1.5219 -6.8070 -2.0320 41 1 3.6127 -8.0367 -2.1260 42 1 5.1634 -7.1838 -2.3170 43 1 5.9558 -9.9732 -0.0470 44 1 5.2373 -4.7629 -2.4870 45 1 4.0318 -2.7157 -3.1340 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885102301.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:37 Heat of formation + Delta-G solvation = -91.497301 kcal Electronic energy + Delta-G solvation = -28765.901287 eV Core-core repulsion = 24875.484001 eV Total energy + Delta-G solvation = -3890.417286 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.41933 -38.87330 -37.24777 -35.85788 -35.58643 -33.74867 -32.11082 -31.51319 -30.66946 -30.49316 -28.46886 -27.46474 -24.60819 -23.75864 -22.68641 -22.10736 -20.98086 -20.77163 -19.11892 -17.92365 -17.55076 -16.61174 -16.48027 -16.04238 -15.96048 -15.46575 -15.15353 -14.55146 -14.44677 -14.35727 -13.88429 -13.61546 -13.42080 -13.33624 -13.08044 -12.82996 -12.74839 -12.53503 -12.24368 -12.10084 -12.04164 -11.88456 -11.83182 -11.61968 -11.51547 -11.28446 -11.19841 -10.94179 -10.93072 -10.57559 -10.54078 -10.50326 -9.98105 -9.83150 -9.69789 -9.59856 -8.60806 -8.56609 -8.40229 -6.20086 -4.25609 0.48020 1.28659 1.75189 2.97208 3.21947 3.27332 3.29300 3.58196 3.73970 4.06569 4.12797 4.33186 4.40718 4.46705 4.63143 4.84676 4.94668 5.00344 5.05824 5.11594 5.16300 5.20332 5.29126 5.30932 5.55565 5.60832 5.67590 5.68274 5.72117 5.76825 5.82845 5.87010 5.94562 6.00993 6.19859 6.21483 6.28929 6.46651 6.69497 6.77912 6.79967 6.87700 7.25935 7.39482 7.56101 7.73942 8.09423 8.78563 9.39315 10.89927 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012929 B = 0.004019 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.222063 B = 6964.779210 C = 8282.061257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.080 3.920 3 H 0.080 0.920 4 O -0.370 6.370 5 C 0.051 3.949 6 C -0.184 4.184 7 C 0.152 3.848 8 C -0.181 4.181 9 N -1.109 6.109 10 S 2.695 3.305 11 O -0.961 6.961 12 O -0.968 6.968 13 C -0.703 4.703 14 C -0.021 4.021 15 C -0.145 4.145 16 C 0.029 3.971 17 C 0.039 3.961 18 C -0.517 4.517 19 H 0.058 0.942 20 C 0.062 3.938 21 N -0.891 5.891 22 Si 0.898 3.102 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.275 1.275 26 C -0.146 4.146 27 C -0.022 4.022 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.418 0.582 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.034 0.966 42 H 0.035 0.965 43 H 0.265 0.735 44 H 0.128 0.872 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.004 18.407 -1.254 19.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.021 3.979 3 H 0.098 0.902 4 O -0.289 6.289 5 C -0.025 4.025 6 C -0.222 4.222 7 C 0.062 3.938 8 C -0.239 4.239 9 N -0.871 5.871 10 S 2.788 3.212 11 O -0.951 6.951 12 O -0.959 6.959 13 C -0.793 4.793 14 C -0.041 4.041 15 C -0.164 4.164 16 C 0.029 3.971 17 C 0.002 3.998 18 C -0.555 4.555 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.529 5.529 22 Si 0.725 3.275 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.165 4.165 27 C -0.041 4.041 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.120 0.880 38 H 0.258 0.742 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.075 0.925 44 H 0.146 0.854 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.099 18.472 -1.950 19.885 hybrid contribution 0.256 -0.698 1.505 1.679 sum -6.842 17.775 -0.445 19.051 Atomic orbital electron populations 1.21962 0.93932 1.03266 1.02766 1.22882 0.95386 0.95621 0.84041 0.90225 1.88917 1.40056 1.67650 1.32326 1.23521 0.87268 0.96579 0.95165 1.24117 1.01392 0.99306 0.97419 1.21529 0.86119 0.93902 0.92211 1.22694 0.99682 1.00301 1.01238 1.55900 1.14971 1.70658 1.45620 1.01604 0.73402 0.73593 0.72584 1.93510 1.65207 1.68539 1.67881 1.93565 1.41640 1.82973 1.77684 1.30254 1.05903 1.18774 1.24346 1.20752 0.99225 0.91621 0.92455 1.21241 0.94637 0.98330 1.02220 1.21098 0.93792 0.97062 0.85194 1.18542 0.95433 0.88728 0.97110 1.20889 1.37668 1.06315 0.90656 0.92383 1.24994 0.95222 0.95323 0.98520 1.69932 1.37803 1.09445 1.35691 0.86560 0.78486 0.77526 0.84920 1.20071 1.21101 1.20061 1.21215 1.00469 0.92681 1.02144 1.20745 0.91821 0.98416 0.93159 0.91076 0.91179 0.90689 0.91795 0.88185 0.88422 0.88596 0.91398 0.91197 0.88001 0.74223 0.85381 0.85402 0.94741 0.94714 0.92538 0.85387 0.85340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 8.16 37.16 0.30 -0.99 16 2 C 0.08 0.76 3.73 -26.16 -0.10 0.66 16 3 H 0.08 0.65 7.69 -51.93 -0.40 0.25 16 4 O -0.37 -4.38 11.19 -35.23 -0.39 -4.77 16 5 C 0.05 0.55 7.72 38.21 0.29 0.85 16 6 C -0.18 -2.07 4.30 -24.72 -0.11 -2.18 16 7 C 0.15 1.53 1.06 -130.29 -0.14 1.39 16 8 C -0.18 -1.71 7.81 37.16 0.29 -1.42 16 9 N -1.11 -11.58 5.25 1.77 0.01 -11.57 16 10 S 2.69 35.92 5.69 -107.50 -0.61 35.31 16 11 O -0.96 -14.03 13.87 -57.17 -0.79 -14.83 16 12 O -0.97 -15.27 17.28 -57.17 -0.99 -16.26 16 13 C -0.70 -10.42 4.07 -39.59 -0.16 -10.58 16 14 C -0.02 -0.33 9.52 -39.58 -0.38 -0.71 16 15 C -0.15 -2.61 9.70 -39.58 -0.38 -2.99 16 16 C 0.03 0.57 5.07 -104.62 -0.53 0.04 16 17 C 0.04 0.92 5.10 -29.03 -0.15 0.77 16 18 C -0.52 -13.49 9.09 -34.44 -0.31 -13.81 16 19 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -25.09 13.29 55.43 0.74 -24.36 16 22 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 C -0.15 -2.53 9.70 -39.58 -0.38 -2.91 16 27 C -0.02 -0.33 6.72 -39.59 -0.27 -0.59 16 28 H 0.07 0.60 7.20 -51.93 -0.37 0.22 16 29 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 30 H 0.07 0.47 7.51 -51.93 -0.39 0.08 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.10 1.26 6.71 -51.93 -0.35 0.92 16 34 H 0.10 1.03 5.75 -51.93 -0.30 0.73 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.10 1.12 5.41 -51.93 -0.28 0.84 16 38 H 0.42 3.64 5.43 -34.47 -0.19 3.45 16 39 H 0.13 1.77 7.62 -52.49 -0.40 1.37 16 40 H 0.13 2.21 8.06 -52.49 -0.42 1.79 16 41 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 42 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 43 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.13 2.11 8.06 -52.49 -0.42 1.68 16 45 H 0.13 1.61 7.06 -52.49 -0.37 1.24 16 LS Contribution 364.08 15.07 5.49 5.49 Total: -1.00 -31.49 364.08 -10.08 -41.57 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.39 Total: 4.82 kcal Atomic # 6 Polarization: -28.79 SS G_CDS: -2.11 Total: -30.90 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.75 Total: -35.93 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -2.18 Total: -35.85 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 35.92 SS G_CDS: -0.61 Total: 35.31 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.49 -10.08 -41.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885102301.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.925 kcal (2) G-P(sol) polarization free energy of solvation -31.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds