Wall clock time and date at job start Tue Mar 31 2020 23:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.99709 * 2 1 4 4 O 1.43751 * 109.88073 * 121.08828 * 2 1 3 5 5 C 1.44374 * 106.97583 * 145.93169 * 4 2 1 6 6 C 1.54994 * 103.49229 * 319.93884 * 5 4 2 7 7 C 1.54102 * 109.87500 * 238.91415 * 2 1 3 8 8 C 1.53004 * 110.48715 * 119.73933 * 7 2 1 9 9 N 1.46496 * 110.48884 * 357.22717 * 7 2 1 10 10 S 1.65607 * 120.00127 * 179.97438 * 9 7 2 11 11 O 1.42107 * 106.40053 * 311.46118 * 10 9 7 12 12 O 1.42099 * 106.40001 * 178.53996 * 10 9 7 13 13 C 1.76198 * 107.21643 * 64.99603 * 10 9 7 14 14 C 1.38235 * 119.99504 * 90.00277 * 13 10 9 15 15 C 1.38243 * 119.99602 * 179.97438 * 14 13 10 16 16 C 1.38232 * 120.00069 * 0.09581 * 15 14 13 17 17 C 1.50701 * 119.99886 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.47321 * 269.91134 * 17 16 15 19 19 H 1.07998 * 119.99890 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99830 * 180.02562 * 18 17 16 21 21 N 1.31505 * 120.00413 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99841 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47236 * 59.99063 * 22 20 18 24 24 H 1.48499 * 109.47469 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47081 * 299.99875 * 22 20 18 26 26 C 1.38234 * 119.99866 * 359.86117 * 16 15 14 27 27 C 1.38230 * 120.00170 * 269.97984 * 13 10 9 28 28 H 1.09002 * 109.47679 * 181.08263 * 1 2 3 29 29 H 1.09010 * 109.46771 * 301.08494 * 1 2 3 30 30 H 1.09004 * 109.47365 * 61.07911 * 1 2 3 31 31 H 1.09002 * 110.62004 * 78.44177 * 5 4 2 32 32 H 1.09000 * 110.61698 * 201.28152 * 5 4 2 33 33 H 1.09000 * 110.91080 * 278.82421 * 6 5 4 34 34 H 1.09006 * 110.90525 * 155.22076 * 6 5 4 35 35 H 1.09000 * 109.47320 * 298.15900 * 8 7 2 36 36 H 1.09004 * 109.46989 * 58.15798 * 8 7 2 37 37 H 1.08991 * 109.47479 * 178.15518 * 8 7 2 38 38 H 0.96998 * 120.00240 * 359.97438 * 9 7 2 39 39 H 1.08000 * 120.00616 * 359.70285 * 14 13 10 40 40 H 1.08001 * 119.99556 * 179.97438 * 15 14 13 41 41 H 1.09007 * 109.47270 * 29.90821 * 17 16 15 42 42 H 1.09000 * 109.46792 * 149.90515 * 17 16 15 43 43 H 0.97006 * 120.00246 * 180.02562 * 21 20 18 44 44 H 1.08000 * 119.99729 * 180.02562 * 26 16 15 45 45 H 1.08001 * 120.00371 * 0.02562 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0188 -0.6980 1.1577 5 6 3.2378 -1.3643 0.7646 6 6 2.9193 -1.8916 -0.6577 7 6 2.0539 -0.7483 -1.2411 8 6 2.9046 0.1823 -2.1080 9 7 0.9392 -1.2947 -2.0189 10 16 1.2373 -2.1466 -3.4074 11 8 2.1497 -1.3669 -4.1684 12 8 -0.0279 -2.5646 -3.9011 13 6 2.1000 -3.6117 -2.9453 14 6 1.3955 -4.7601 -2.6361 15 6 2.0724 -5.9098 -2.2740 16 6 3.4536 -5.9105 -2.2193 17 6 4.1914 -7.1637 -1.8240 18 6 4.3855 -7.1822 -0.3297 19 1 4.0123 -6.3678 0.2735 20 6 5.0404 -8.2384 0.2673 21 7 5.4953 -9.2299 -0.4671 22 14 5.2816 -8.2611 2.1196 23 1 3.9576 -8.2337 2.7916 24 1 6.0085 -9.4960 2.5091 25 1 6.0699 -7.0716 2.5307 26 6 4.1581 -4.7623 -2.5294 27 6 3.4813 -3.6129 -2.8924 28 1 -0.3634 -1.0275 0.0194 29 1 -0.3633 0.5307 0.8802 30 1 -0.3634 0.4970 -0.8995 31 1 4.0685 -0.6591 0.7355 32 1 3.4598 -2.1892 1.4416 33 1 2.3537 -2.8221 -0.6100 34 1 3.8330 -2.0226 -1.2375 35 1 2.2915 1.0117 -2.4606 36 1 3.7353 0.5697 -1.5181 37 1 3.2930 -0.3715 -2.9626 38 1 0.0264 -1.1576 -1.7206 39 1 0.3161 -4.7580 -2.6730 40 1 1.5219 -6.8070 -2.0320 41 1 3.6127 -8.0367 -2.1260 42 1 5.1634 -7.1838 -2.3170 43 1 5.9558 -9.9732 -0.0470 44 1 5.2373 -4.7629 -2.4870 45 1 4.0318 -2.7157 -3.1340 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885102301.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:36 Heat of formation + Delta-G solvation = -112.379164 kcal Electronic energy + Delta-G solvation = -28766.806793 eV Core-core repulsion = 24875.484001 eV Total energy + Delta-G solvation = -3891.322792 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.23426 -40.22787 -38.39201 -36.99594 -36.46863 -35.59864 -33.42062 -32.70086 -31.92082 -31.35993 -29.32404 -29.12679 -25.60628 -25.30837 -23.85426 -23.06738 -22.47698 -21.66604 -20.17071 -18.94659 -18.68492 -18.52290 -17.52759 -16.92589 -16.80480 -16.75886 -16.60268 -15.99489 -15.77549 -15.36762 -15.14145 -14.65990 -14.55328 -14.33020 -14.22336 -14.07506 -13.77382 -13.59554 -13.47145 -13.39671 -13.21263 -13.12650 -12.96209 -12.79033 -12.64683 -12.63566 -12.44688 -12.15624 -12.10837 -12.04832 -11.92401 -11.65802 -11.43969 -11.34499 -10.74235 -10.63696 -10.52927 -9.92729 -9.88392 -8.25115 -6.37910 -0.62434 -0.04805 0.41572 1.39810 1.41159 1.49442 1.94380 2.35332 2.54746 2.78343 2.89457 3.07953 3.26362 3.39924 3.67715 3.86300 3.88865 3.94625 4.00798 4.16719 4.20866 4.24922 4.38400 4.48312 4.49381 4.59395 4.66849 4.77417 4.82285 4.89399 4.92080 4.93872 5.03921 5.10471 5.12621 5.14405 5.25720 5.27635 5.28178 5.34430 5.49549 5.68416 5.87925 5.93167 5.93771 5.99864 6.10806 6.73942 7.31225 8.84987 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012929 B = 0.004019 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.222063 B = 6964.779210 C = 8282.061257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.077 3.923 3 H 0.100 0.900 4 O -0.390 6.390 5 C 0.050 3.950 6 C -0.190 4.190 7 C 0.153 3.847 8 C -0.183 4.183 9 N -1.096 6.096 10 S 2.719 3.281 11 O -0.968 6.968 12 O -0.989 6.989 13 C -0.699 4.699 14 C -0.019 4.019 15 C -0.156 4.156 16 C 0.000 4.000 17 C 0.047 3.953 18 C -0.528 4.528 19 H 0.059 0.941 20 C 0.009 3.991 21 N -0.928 5.928 22 Si 0.963 3.037 23 H -0.270 1.270 24 H -0.283 1.283 25 H -0.265 1.265 26 C -0.151 4.151 27 C -0.011 4.011 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.428 0.572 39 H 0.149 0.851 40 H 0.125 0.875 41 H 0.008 0.992 42 H 0.012 0.988 43 H 0.266 0.734 44 H 0.131 0.869 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.663 21.429 -0.615 22.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.018 3.982 3 H 0.117 0.883 4 O -0.310 6.310 5 C -0.027 4.027 6 C -0.229 4.229 7 C 0.064 3.936 8 C -0.241 4.241 9 N -0.862 5.862 10 S 2.810 3.190 11 O -0.957 6.957 12 O -0.979 6.979 13 C -0.786 4.786 14 C -0.039 4.039 15 C -0.175 4.175 16 C 0.000 4.000 17 C 0.010 3.990 18 C -0.566 4.566 19 H 0.077 0.923 20 C -0.190 4.190 21 N -0.568 5.568 22 Si 0.787 3.213 23 H -0.195 1.195 24 H -0.208 1.208 25 H -0.190 1.190 26 C -0.170 4.170 27 C -0.030 4.030 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.119 0.881 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.270 0.730 39 H 0.167 0.833 40 H 0.143 0.857 41 H 0.026 0.974 42 H 0.030 0.970 43 H 0.075 0.925 44 H 0.149 0.851 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.763 21.483 -1.313 22.881 hybrid contribution 0.407 -1.528 1.268 2.027 sum -7.356 19.956 -0.045 21.268 Atomic orbital electron populations 1.22034 0.93021 1.03228 1.04071 1.23074 0.96251 0.96070 0.82785 0.88272 1.88901 1.40504 1.68045 1.33555 1.23568 0.87764 0.96873 0.94446 1.24136 1.01613 0.98939 0.98243 1.21626 0.85774 0.93605 0.92614 1.22725 1.00353 1.00239 1.00830 1.55665 1.15916 1.69680 1.44942 1.00947 0.72458 0.72831 0.72750 1.93515 1.65438 1.68170 1.68625 1.93539 1.42468 1.83318 1.78565 1.30702 1.06141 1.19480 1.22298 1.20944 1.00292 0.90993 0.91627 1.21248 0.94023 0.99311 1.02932 1.20767 0.94537 0.96325 0.88391 1.18272 0.94412 0.90172 0.96164 1.21232 1.37144 1.06193 0.91994 0.92316 1.25863 0.94953 0.94943 1.03199 1.70057 1.38853 1.10191 1.37653 0.85533 0.78626 0.77814 0.79321 1.19465 1.20802 1.18962 1.21255 1.00737 0.92723 1.02309 1.20988 0.92004 0.98381 0.91593 0.91768 0.90635 0.88731 0.89666 0.89191 0.90445 0.88130 0.90289 0.89289 0.89343 0.72981 0.83318 0.85745 0.97359 0.96956 0.92491 0.85112 0.82429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 8.16 71.98 0.59 -1.59 16 2 C 0.08 1.23 3.73 30.97 0.12 1.34 16 3 H 0.10 1.22 7.69 -2.39 -0.02 1.20 16 4 O -0.39 -8.40 11.19 -148.98 -1.67 -10.06 16 5 C 0.05 0.98 7.72 72.66 0.56 1.54 16 6 C -0.19 -3.92 4.30 31.89 0.14 -3.79 16 7 C 0.15 2.63 1.06 4.60 0.00 2.64 16 8 C -0.18 -2.80 7.81 71.98 0.56 -2.24 16 9 N -1.10 -19.87 5.25 -148.31 -0.78 -20.65 16 10 S 2.72 65.90 5.69 -56.49 -0.32 65.58 16 11 O -0.97 -25.49 13.87 -128.00 -1.77 -27.27 16 12 O -0.99 -28.93 17.28 -128.00 -2.21 -31.14 16 13 C -0.70 -19.62 4.07 22.27 0.09 -19.53 16 14 C -0.02 -0.60 9.52 22.27 0.21 -0.38 16 15 C -0.16 -5.73 9.70 22.27 0.22 -5.51 16 16 C 0.00 0.00 5.07 -19.87 -0.10 -0.10 16 17 C 0.05 2.35 5.10 29.10 0.15 2.50 16 18 C -0.53 -28.40 9.09 25.60 0.23 -28.17 16 19 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 20 C 0.01 0.50 5.46 84.66 0.46 0.97 16 21 N -0.93 -53.96 13.29 21.44 0.28 -53.68 16 22 Si 0.96 42.44 29.54 68.60 2.03 44.46 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 24 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 25 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 26 C -0.15 -5.26 9.70 22.27 0.22 -5.04 16 27 C -0.01 -0.30 6.72 22.27 0.15 -0.15 16 28 H 0.06 0.93 7.20 -2.39 -0.02 0.91 16 29 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.09 0.85 7.51 -2.39 -0.02 0.83 16 31 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.08 1.91 6.71 -2.39 -0.02 1.90 16 34 H 0.10 1.93 5.75 -2.38 -0.01 1.92 16 35 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.09 1.64 5.41 -2.39 -0.01 1.63 16 38 H 0.43 6.22 5.43 -96.75 -0.53 5.69 16 39 H 0.15 3.90 7.62 -2.91 -0.02 3.87 16 40 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 41 H 0.01 0.44 8.09 -2.38 -0.02 0.42 16 42 H 0.01 0.65 8.09 -2.39 -0.02 0.63 16 43 H 0.27 14.61 8.31 -92.70 -0.77 13.84 16 44 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 45 H 0.16 3.53 7.06 -2.91 -0.02 3.50 16 Total: -1.00 -68.39 364.08 -0.37 -68.76 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.48 Total: 21.50 kcal Atomic # 6 Polarization: -61.09 SS G_CDS: 3.60 Total: -57.50 kcal Atomic # 7 Polarization: -73.83 SS G_CDS: -0.49 Total: -74.33 kcal Atomic # 8 Polarization: -62.82 SS G_CDS: -5.65 Total: -68.47 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Atomic # 16 Polarization: 65.90 SS G_CDS: -0.32 Total: 65.58 kcal Total: -68.39 -0.37 -68.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885102301.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.620 kcal (2) G-P(sol) polarization free energy of solvation -68.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds