Wall clock time and date at job start Tue Mar 31 2020 23:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 110.41594 * 2 1 4 4 O 1.44423 * 110.37136 * 237.68533 * 2 1 3 5 5 C 1.44419 * 105.27359 * 200.65369 * 4 2 1 6 6 C 1.54477 * 104.80494 * 40.51691 * 5 4 2 7 7 C 1.54485 * 110.36993 * 122.30347 * 2 1 3 8 8 C 1.53000 * 110.51319 * 261.45029 * 7 2 1 9 9 N 1.46492 * 110.51442 * 24.16831 * 7 2 1 10 10 S 1.65594 * 120.00107 * 186.71442 * 9 7 2 11 11 O 1.42104 * 106.40242 * 52.29916 * 10 9 7 12 12 O 1.42101 * 106.40573 * 185.21679 * 10 9 7 13 13 C 1.76198 * 107.22061 * 298.75383 * 10 9 7 14 14 C 1.38234 * 120.00283 * 275.60505 * 13 10 9 15 15 C 1.38236 * 119.99591 * 179.80802 * 14 13 10 16 16 C 1.38232 * 120.00297 * 0.39573 * 15 14 13 17 17 C 1.50701 * 119.99834 * 179.83378 * 16 15 14 18 18 C 1.50700 * 109.47182 * 270.02012 * 17 16 15 19 19 H 1.07994 * 120.00063 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00001 * 180.02562 * 18 17 16 21 21 N 1.31523 * 119.99819 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00168 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47105 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47373 * 119.99922 * 22 20 18 25 25 H 1.48498 * 109.47120 * 239.99910 * 22 20 18 26 26 C 1.38232 * 120.00072 * 359.85778 * 16 15 14 27 27 C 1.38235 * 119.99734 * 359.95447 * 26 16 15 28 28 H 1.09002 * 109.46993 * 174.27397 * 1 2 3 29 29 H 1.09006 * 109.46947 * 294.26802 * 1 2 3 30 30 H 1.08999 * 109.47437 * 54.26541 * 1 2 3 31 31 H 1.09004 * 110.37331 * 159.34360 * 5 4 2 32 32 H 1.08999 * 110.37671 * 281.67927 * 5 4 2 33 33 H 1.09002 * 110.51611 * 94.66214 * 6 5 4 34 34 H 1.09004 * 110.51094 * 217.23833 * 6 5 4 35 35 H 1.09003 * 109.46853 * 67.99215 * 8 7 2 36 36 H 1.08996 * 109.46798 * 187.98683 * 8 7 2 37 37 H 1.08995 * 109.47150 * 307.99419 * 8 7 2 38 38 H 0.97006 * 120.00185 * 6.71367 * 9 7 2 39 39 H 1.07996 * 119.99840 * 359.97438 * 14 13 10 40 40 H 1.08003 * 119.99717 * 180.22867 * 15 14 13 41 41 H 1.08997 * 109.47316 * 30.02242 * 17 16 15 42 42 H 1.09002 * 109.47172 * 150.02199 * 17 16 15 43 43 H 0.96997 * 119.99805 * 179.97438 * 21 20 18 44 44 H 1.08001 * 119.99932 * 179.97438 * 26 16 15 45 45 H 1.08004 * 119.99554 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 8 2.0328 -0.7238 -1.1442 5 6 3.3873 -1.0871 -0.7994 6 6 3.3178 -1.5056 0.6860 7 6 2.0678 -0.7739 1.2241 8 6 2.4541 0.1948 2.3435 9 7 1.0730 -1.7388 1.6990 10 16 1.3376 -2.5784 3.1015 11 8 1.6422 -1.6111 4.0969 12 8 0.2683 -3.5066 3.2214 13 6 2.8008 -3.5324 2.8703 14 6 2.7304 -4.7676 2.2538 15 6 3.8790 -5.5142 2.0689 16 6 5.0968 -5.0292 2.5077 17 6 6.3484 -5.8448 2.3094 18 6 6.5592 -6.7398 3.5034 19 1 5.8569 -6.7203 4.3236 20 6 7.6487 -7.5836 3.5487 21 7 8.5043 -7.6070 2.5501 22 14 7.9096 -8.6934 5.0283 23 1 6.8138 -8.4790 6.0074 24 1 7.9097 -10.1120 4.5892 25 1 9.2124 -8.3722 5.6645 26 6 5.1664 -3.7963 3.1289 27 6 4.0184 -3.0480 3.3103 28 1 -0.3633 -1.0226 -0.1025 29 1 -0.3633 0.4224 0.9369 30 1 -0.3634 0.6002 -0.8342 31 1 3.7242 -1.9223 -1.4135 32 1 4.0525 -0.2324 -0.9221 33 1 3.1956 -2.5852 0.7733 34 1 4.2121 -1.1792 1.2170 35 1 1.5558 0.6666 2.7419 36 1 2.9603 -0.3523 3.1388 37 1 3.1213 0.9603 1.9474 38 1 0.2592 -1.8858 1.1918 39 1 1.7784 -5.1482 1.9142 40 1 3.8246 -6.4777 1.5839 41 1 6.2463 -6.4546 1.4118 42 1 7.2034 -5.1776 2.2001 43 1 9.2709 -8.2003 2.5821 44 1 6.1178 -3.4175 3.4721 45 1 4.0729 -2.0845 3.7953 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885102303.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:45 Heat of formation + Delta-G solvation = -96.658156 kcal Electronic energy + Delta-G solvation = -28516.062741 eV Core-core repulsion = 24625.421664 eV Total energy + Delta-G solvation = -3890.641078 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.40286 -38.87041 -37.22452 -35.82365 -35.54232 -33.73737 -32.05549 -31.50229 -30.82638 -30.56639 -28.44056 -27.46643 -24.65168 -23.76483 -22.52909 -22.25218 -20.98664 -20.75965 -19.17393 -17.90822 -17.57802 -16.65007 -16.47358 -15.98848 -15.87992 -15.45852 -15.14788 -14.73672 -14.46859 -14.41292 -13.89799 -13.66768 -13.45653 -13.25328 -12.97812 -12.88896 -12.71298 -12.55351 -12.28214 -12.21000 -12.03226 -11.87200 -11.75172 -11.66637 -11.51942 -11.36843 -11.18843 -10.95700 -10.94745 -10.65874 -10.52950 -10.51324 -10.05128 -9.81227 -9.70737 -9.60084 -8.62487 -8.56718 -8.39824 -6.19865 -4.24840 0.48867 1.28700 1.75261 2.98061 3.21347 3.29606 3.34708 3.54407 3.73855 4.06194 4.14670 4.32771 4.35908 4.49183 4.59418 4.83198 4.85654 4.96349 5.02382 5.12589 5.17503 5.18576 5.21318 5.29161 5.50805 5.55085 5.59517 5.63251 5.68621 5.76053 5.77511 5.87055 5.93893 5.97454 6.11463 6.20372 6.29419 6.47119 6.57019 6.79248 6.80911 6.87573 7.25714 7.39172 7.55597 7.75477 8.10362 8.80303 9.40426 10.90157 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018377 B = 0.003225 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.307458 B = 8679.346978 C = 9426.339486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.077 3.923 3 H 0.083 0.917 4 O -0.369 6.369 5 C 0.049 3.951 6 C -0.183 4.183 7 C 0.152 3.848 8 C -0.171 4.171 9 N -1.107 6.107 10 S 2.695 3.305 11 O -0.961 6.961 12 O -0.968 6.968 13 C -0.701 4.701 14 C -0.022 4.022 15 C -0.144 4.144 16 C 0.028 3.972 17 C 0.039 3.961 18 C -0.517 4.517 19 H 0.059 0.941 20 C 0.061 3.939 21 N -0.891 5.891 22 Si 0.898 3.102 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.145 4.145 27 C -0.023 4.023 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.417 0.583 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.034 0.966 42 H 0.035 0.965 43 H 0.264 0.736 44 H 0.128 0.872 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.966 16.776 -6.001 22.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.018 3.982 3 H 0.101 0.899 4 O -0.288 6.288 5 C -0.028 4.028 6 C -0.222 4.222 7 C 0.063 3.937 8 C -0.229 4.229 9 N -0.868 5.868 10 S 2.788 3.212 11 O -0.951 6.951 12 O -0.958 6.958 13 C -0.791 4.791 14 C -0.041 4.041 15 C -0.163 4.163 16 C 0.028 3.972 17 C 0.002 3.998 18 C -0.555 4.555 19 H 0.078 0.922 20 C -0.141 4.141 21 N -0.529 5.529 22 Si 0.725 3.275 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.164 4.164 27 C -0.043 4.043 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.080 0.920 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.256 0.744 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.073 0.927 44 H 0.146 0.854 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.311 16.709 -5.405 22.036 hybrid contribution 0.761 -1.146 0.355 1.421 sum -12.550 15.563 -5.051 20.621 Atomic orbital electron populations 1.21818 0.93076 1.02962 1.02978 1.23186 0.95712 0.95321 0.83990 0.89944 1.89159 1.27469 1.74481 1.37717 1.23372 0.84247 1.00164 0.94972 1.23835 0.98142 1.03357 0.96887 1.21473 0.87653 0.89035 0.95565 1.22528 1.03214 0.99344 0.97861 1.55791 1.30254 1.54921 1.45820 1.01646 0.73749 0.73165 0.72673 1.93557 1.85131 1.60127 1.56317 1.93572 1.53544 1.63385 1.85307 1.30254 1.17861 1.11511 1.19463 1.20729 0.98778 0.91649 0.92988 1.21237 0.92047 1.00395 1.02660 1.21102 0.97227 0.92210 0.86710 1.18540 0.88658 0.94252 0.98309 1.21006 1.09478 1.21649 1.03386 0.92241 1.25004 0.95678 0.97013 0.96453 1.69957 1.13524 1.38410 1.31054 0.86429 0.78241 0.80294 0.82491 1.19569 1.20798 1.20792 1.21227 0.98306 0.95452 1.01371 1.20781 0.91098 0.98654 0.93740 0.91435 0.90496 0.91369 0.88645 0.91983 0.88540 0.89000 0.90898 0.89360 0.91048 0.74448 0.85509 0.85404 0.94750 0.94727 0.92675 0.85395 0.85226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 8.66 37.16 0.32 -0.74 16 2 C 0.08 0.65 3.45 -25.95 -0.09 0.56 16 3 H 0.08 0.58 7.78 -51.93 -0.40 0.17 16 4 O -0.37 -3.87 11.34 -35.23 -0.40 -4.27 16 5 C 0.05 0.46 7.63 37.93 0.29 0.75 16 6 C -0.18 -1.83 4.92 -25.16 -0.12 -1.95 16 7 C 0.15 1.42 1.03 -130.25 -0.13 1.29 16 8 C -0.17 -1.54 7.26 37.16 0.27 -1.27 16 9 N -1.11 -11.26 5.17 1.80 0.01 -11.25 16 10 S 2.69 36.33 5.61 -107.50 -0.60 35.73 16 11 O -0.96 -14.25 13.90 -57.17 -0.79 -15.05 16 12 O -0.97 -15.71 17.44 -57.17 -1.00 -16.71 16 13 C -0.70 -10.45 3.60 -39.58 -0.14 -10.59 16 14 C -0.02 -0.35 9.20 -39.58 -0.36 -0.71 16 15 C -0.14 -2.58 9.70 -39.58 -0.38 -2.97 16 16 C 0.03 0.55 5.07 -104.63 -0.53 0.02 16 17 C 0.04 0.93 5.10 -29.03 -0.15 0.79 16 18 C -0.52 -13.81 9.09 -34.44 -0.31 -14.13 16 19 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -25.23 13.29 55.43 0.74 -24.50 16 22 Si 0.90 20.95 29.54 -169.99 -5.02 15.92 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 C -0.14 -2.52 9.70 -39.58 -0.38 -2.90 16 27 C -0.02 -0.35 8.29 -39.58 -0.33 -0.68 16 28 H 0.07 0.48 6.41 -51.93 -0.33 0.15 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.10 1.11 5.59 -51.93 -0.29 0.82 16 34 H 0.09 0.85 7.54 -51.93 -0.39 0.46 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.92 5.24 -51.93 -0.27 0.65 16 37 H 0.07 0.49 8.02 -51.93 -0.42 0.08 16 38 H 0.42 3.60 6.07 -34.46 -0.21 3.39 16 39 H 0.13 1.75 7.75 -52.49 -0.41 1.34 16 40 H 0.13 2.20 8.06 -52.48 -0.42 1.78 16 41 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 42 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 43 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 44 H 0.13 2.12 8.06 -52.49 -0.42 1.70 16 45 H 0.13 1.67 6.60 -52.48 -0.35 1.32 16 LS Contribution 365.82 15.07 5.51 5.51 Total: -1.00 -32.16 365.82 -10.13 -42.28 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.41 Total: 3.30 kcal Atomic # 6 Polarization: -28.82 SS G_CDS: -2.16 Total: -30.98 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.75 Total: -35.75 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -2.19 Total: -36.02 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 36.33 SS G_CDS: -0.60 Total: 35.73 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.16 -10.13 -42.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885102303.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.376 kcal (2) G-P(sol) polarization free energy of solvation -32.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds