Wall clock time and date at job start Tue Mar 31 2020 23:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.49593 * 2 1 4 4 C 1.53187 * 109.49617 * 239.93427 * 2 1 3 5 5 N 1.46926 * 108.77227 * 185.38194 * 4 2 1 6 6 S 1.65607 * 120.62900 * 233.33374 * 5 4 2 7 7 O 1.42100 * 106.40189 * 203.53875 * 6 5 4 8 8 O 1.42100 * 106.40342 * 336.46176 * 6 5 4 9 9 C 1.76204 * 107.21651 * 90.00316 * 6 5 4 10 10 C 1.38237 * 119.99766 * 269.72258 * 9 6 5 11 11 C 1.38229 * 120.00169 * 179.76888 * 10 9 6 12 12 C 1.38243 * 119.99424 * 0.50582 * 11 10 9 13 13 C 1.50701 * 119.99420 * 179.72479 * 12 11 10 14 14 C 1.50694 * 109.47295 * 270.02257 * 13 12 11 15 15 H 1.08008 * 120.00232 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00151 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99863 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00033 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46959 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47060 * 119.99895 * 18 16 14 21 21 H 1.48498 * 109.47234 * 239.99657 * 18 16 14 22 22 C 1.38226 * 120.00281 * 359.75077 * 12 11 10 23 23 C 1.38227 * 119.99942 * 90.00039 * 9 6 5 24 24 C 1.46924 * 118.73991 * 53.60881 * 5 4 2 25 25 C 1.53187 * 108.77642 * 306.38981 * 24 5 4 26 26 C 1.53038 * 109.52227 * 120.07778 * 2 1 3 27 27 H 1.09003 * 109.46482 * 301.35512 * 26 2 1 28 28 O 1.42909 * 109.45945 * 61.32802 * 26 2 1 29 29 H 1.08998 * 109.47301 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47520 * 300.06667 * 1 2 3 31 31 H 1.09005 * 109.47086 * 60.06488 * 1 2 3 32 32 H 1.09002 * 109.58471 * 65.59613 * 4 2 1 33 33 H 1.08996 * 109.70613 * 305.23998 * 4 2 1 34 34 H 1.08001 * 119.99893 * 0.02562 * 10 9 6 35 35 H 1.07999 * 120.00397 * 180.23492 * 11 10 9 36 36 H 1.09000 * 109.47501 * 30.02595 * 13 12 11 37 37 H 1.09004 * 109.46992 * 150.02548 * 13 12 11 38 38 H 0.97007 * 119.99860 * 180.02562 * 17 16 14 39 39 H 1.08000 * 119.99896 * 179.97438 * 22 12 11 40 40 H 1.07997 * 120.00789 * 0.02562 * 23 9 6 41 41 H 1.09003 * 109.58516 * 66.18182 * 24 5 4 42 42 H 1.09002 * 109.58479 * 186.60340 * 24 5 4 43 43 H 1.08999 * 109.49975 * 294.68379 * 25 24 5 44 44 H 1.09004 * 109.52338 * 174.59879 * 25 24 5 45 45 H 0.96695 * 113.99877 * 179.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7235 -1.2497 5 7 3.5046 -0.8281 -1.1701 6 16 4.4579 -0.2892 -2.4124 7 8 5.6868 -0.9953 -2.3106 8 8 3.6457 -0.3069 -3.5783 9 6 4.8282 1.4029 -2.0895 10 6 3.9989 2.3967 -2.5749 11 6 4.2867 3.7240 -2.3176 12 6 5.4096 4.0580 -1.5837 13 6 5.7267 5.5053 -1.3085 14 6 6.5960 6.0480 -2.4133 15 1 6.8892 5.4089 -3.2332 16 6 7.0171 7.3605 -2.3777 17 7 6.6605 8.1385 -1.3792 18 14 8.0940 8.0334 -3.7477 19 1 8.3521 6.9639 -4.7450 20 1 7.4028 9.1700 -4.4077 21 1 9.3836 8.5012 -3.1791 22 6 6.2417 3.0645 -1.1029 23 6 5.9510 1.7369 -1.3558 24 6 4.1059 -1.4255 0.0300 25 6 3.5715 -0.6942 1.2654 26 6 2.0414 -0.7229 1.2482 27 1 1.6588 -0.2246 2.1389 28 8 1.5912 -2.0791 1.2309 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5148 0.8893 31 1 -0.3633 0.5128 -0.8906 32 1 1.7632 -0.1576 -2.1389 33 1 1.6058 -1.7213 -1.3007 34 1 3.1238 2.1359 -3.1517 35 1 3.6367 4.5002 -2.6936 36 1 4.8003 6.0776 -1.2607 37 1 6.2539 5.5873 -0.3579 38 1 6.9565 9.0620 -1.3543 39 1 7.1192 3.3255 -0.5299 40 1 6.6017 0.9608 -0.9807 41 1 3.8387 -2.4808 0.0860 42 1 5.1901 -1.3229 -0.0148 43 1 3.9160 0.3399 1.2535 44 1 3.9344 -1.1883 2.1667 45 1 1.8790 -2.5988 1.9939 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885120097.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:27 Heat of formation + Delta-G solvation = -136.540501 kcal Electronic energy + Delta-G solvation = -28054.063288 eV Core-core repulsion = 24161.692782 eV Total energy + Delta-G solvation = -3892.370506 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.29877 -40.20655 -38.45128 -37.01546 -36.46408 -35.60576 -34.02241 -33.32648 -32.01715 -31.93984 -29.25234 -27.56134 -25.64164 -25.33780 -23.75208 -23.23553 -22.45269 -20.98960 -19.99294 -19.05572 -18.61957 -18.45374 -17.75110 -17.21887 -16.85726 -16.23062 -16.01069 -15.94408 -15.61252 -15.48769 -15.24892 -14.92778 -14.64252 -14.49457 -14.41971 -13.95388 -13.63055 -13.46395 -13.41885 -13.41060 -13.36646 -13.23562 -12.86130 -12.76659 -12.69638 -12.67462 -12.38540 -12.16188 -12.05461 -11.93961 -11.84610 -11.65984 -11.45963 -11.20297 -10.77840 -10.66684 -10.02309 -9.97450 -9.85474 -8.28215 -6.40764 -0.69416 -0.07243 0.38626 1.36472 1.38149 1.50718 1.90878 2.34082 2.56836 2.77606 3.04540 3.19412 3.45215 3.63212 3.83804 3.88599 3.95442 4.04625 4.08342 4.14306 4.16534 4.42609 4.44694 4.46488 4.55528 4.66053 4.76861 4.80286 4.86639 4.89727 4.90821 4.93645 5.09384 5.11540 5.18743 5.23223 5.25333 5.25819 5.32101 5.33314 5.51960 5.63071 5.66330 5.85253 5.91303 6.09067 6.71169 7.03198 7.28446 8.81981 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017534 B = 0.003012 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.553208 B = 9293.008760 C = 9847.252077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 H 0.081 0.919 4 C 0.127 3.873 5 N -0.989 5.989 6 S 2.713 3.287 7 O -0.981 6.981 8 O -0.983 6.983 9 C -0.699 4.699 10 C -0.020 4.020 11 C -0.153 4.153 12 C -0.003 4.003 13 C 0.049 3.951 14 C -0.533 4.533 15 H 0.053 0.947 16 C 0.010 3.990 17 N -0.925 5.925 18 Si 0.964 3.036 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.153 4.153 23 C -0.018 4.018 24 C 0.119 3.881 25 C -0.168 4.168 26 C 0.117 3.883 27 H 0.066 0.934 28 O -0.571 6.571 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.152 0.848 35 H 0.129 0.871 36 H 0.013 0.987 37 H 0.014 0.986 38 H 0.267 0.733 39 H 0.130 0.870 40 H 0.154 0.846 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.070 0.930 44 H 0.103 0.897 45 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.856 -20.983 7.765 24.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.125 4.125 3 H 0.099 0.901 4 C 0.002 3.998 5 N -0.828 5.828 6 S 2.806 3.194 7 O -0.971 6.971 8 O -0.973 6.973 9 C -0.786 4.786 10 C -0.039 4.039 11 C -0.172 4.172 12 C -0.003 4.003 13 C 0.012 3.988 14 C -0.571 4.571 15 H 0.071 0.929 16 C -0.189 4.189 17 N -0.564 5.564 18 Si 0.788 3.212 19 H -0.193 1.193 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.172 4.172 23 C -0.037 4.037 24 C -0.006 4.006 25 C -0.207 4.207 26 C 0.058 3.942 27 H 0.084 0.916 28 O -0.379 6.379 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.170 0.830 35 H 0.147 0.853 36 H 0.032 0.968 37 H 0.032 0.968 38 H 0.076 0.924 39 H 0.148 0.852 40 H 0.172 0.828 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.089 0.911 44 H 0.122 0.878 45 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -10.820 -21.124 6.550 24.621 hybrid contribution 0.974 1.638 0.306 1.931 sum -9.846 -19.486 6.857 22.883 Atomic orbital electron populations 1.21682 0.93171 1.02620 1.02280 1.21585 0.97317 0.99159 0.94416 0.90070 1.21556 0.77314 1.02357 0.98541 1.57555 1.16276 1.74462 1.34545 1.01162 0.72375 0.73074 0.72828 1.93518 1.45168 1.71741 1.86662 1.93518 1.69654 1.87363 1.46758 1.30841 1.07083 1.24487 1.16193 1.20980 0.97357 0.91773 0.93762 1.21287 0.98418 0.96818 1.00665 1.20810 0.92154 0.96910 0.90444 1.18259 0.96308 0.87687 0.96558 1.21317 1.31632 0.96436 1.07745 0.92908 1.25851 0.97484 0.97147 0.98404 1.70057 1.46381 1.07442 1.32510 0.85415 0.78488 0.78328 0.78944 1.19291 1.20027 1.20008 1.21292 1.00486 0.92605 1.02796 1.20987 0.93575 0.96793 0.92385 1.21569 0.97788 0.98400 0.82815 1.22658 0.97005 1.02234 0.98783 1.21624 0.92082 0.83341 0.97128 0.91575 1.86479 1.78031 1.22645 1.50768 0.91796 0.91924 0.92237 0.89653 0.89635 0.83036 0.85269 0.96826 0.96777 0.92367 0.85185 0.82834 0.89143 0.89288 0.91129 0.87836 0.75887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.07 71.98 0.65 -1.28 16 2 C -0.10 -1.63 2.70 -10.72 -0.03 -1.66 16 3 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 4 C 0.13 2.33 5.42 86.36 0.47 2.79 16 5 N -0.99 -20.00 3.29 -513.09 -1.69 -21.68 16 6 S 2.71 73.74 5.69 -56.49 -0.32 73.42 16 7 O -0.98 -30.32 15.99 -128.00 -2.05 -32.37 16 8 O -0.98 -31.03 16.00 -128.00 -2.05 -33.08 16 9 C -0.70 -21.12 5.97 22.27 0.13 -20.98 16 10 C -0.02 -0.62 9.52 22.27 0.21 -0.41 16 11 C -0.15 -5.69 9.70 22.27 0.22 -5.48 16 12 C 0.00 -0.12 5.07 -19.87 -0.10 -0.22 16 13 C 0.05 2.49 5.10 29.10 0.15 2.63 16 14 C -0.53 -29.67 9.09 25.60 0.23 -29.44 16 15 H 0.05 2.94 7.74 -2.91 -0.02 2.91 16 16 C 0.01 0.57 5.46 84.66 0.46 1.03 16 17 N -0.92 -53.89 13.29 21.45 0.28 -53.61 16 18 Si 0.96 43.58 29.54 68.60 2.03 45.61 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 22 C -0.15 -5.64 9.70 22.27 0.22 -5.43 16 23 C -0.02 -0.57 9.52 22.27 0.21 -0.36 16 24 C 0.12 1.86 6.14 86.36 0.53 2.39 16 25 C -0.17 -2.02 5.80 30.67 0.18 -1.85 16 26 C 0.12 1.44 3.19 30.62 0.10 1.54 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 O -0.57 -6.42 11.43 -148.98 -1.70 -8.12 16 29 H 0.06 0.91 7.72 -2.39 -0.02 0.89 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.09 1.61 7.13 -2.39 -0.02 1.60 16 33 H 0.09 1.51 7.82 -2.39 -0.02 1.49 16 34 H 0.15 4.02 7.61 -2.91 -0.02 4.00 16 35 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 36 H 0.01 0.72 8.09 -2.39 -0.02 0.70 16 37 H 0.01 0.75 8.09 -2.38 -0.02 0.73 16 38 H 0.27 14.58 8.31 -92.70 -0.77 13.81 16 39 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 40 H 0.15 3.93 7.62 -2.91 -0.02 3.91 16 41 H 0.09 1.21 7.81 -2.39 -0.02 1.19 16 42 H 0.09 1.42 7.12 -2.39 -0.02 1.41 16 43 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 45 H 0.39 1.35 9.08 -74.06 -0.67 0.68 16 Total: -1.00 -71.02 377.11 -1.55 -72.57 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.32 Total: 13.97 kcal Atomic # 6 Polarization: -60.33 SS G_CDS: 3.63 Total: -56.70 kcal Atomic # 7 Polarization: -73.89 SS G_CDS: -1.40 Total: -75.29 kcal Atomic # 8 Polarization: -67.77 SS G_CDS: -5.80 Total: -73.57 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: 73.74 SS G_CDS: -0.32 Total: 73.42 kcal Total: -71.02 -1.55 -72.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885120097.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.969 kcal (2) G-P(sol) polarization free energy of solvation -71.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds