Wall clock time and date at job start Tue Mar 31 2020 23:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.50003 * 2 1 4 4 C 1.52760 * 109.59269 * 240.04074 * 2 1 3 5 5 N 1.46923 * 109.00867 * 185.53894 * 4 2 1 6 6 S 1.65599 * 120.62949 * 233.58297 * 5 4 2 7 7 O 1.42103 * 106.40420 * 156.17566 * 6 5 4 8 8 O 1.42098 * 106.40176 * 23.26281 * 6 5 4 9 9 C 1.76199 * 107.22067 * 269.72188 * 6 5 4 10 10 C 1.38227 * 120.00099 * 89.99895 * 9 6 5 11 11 C 1.38244 * 120.00133 * 180.02562 * 10 9 6 12 12 C 1.38232 * 119.99611 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99860 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47064 * 89.99959 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99594 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99875 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47061 * 90.00257 * 18 16 14 20 20 H 1.48497 * 109.46906 * 209.99430 * 18 16 14 21 21 H 1.48498 * 109.47403 * 329.99876 * 18 16 14 22 22 C 1.38234 * 120.00312 * 0.25696 * 12 11 10 23 23 C 1.38235 * 119.99869 * 359.47196 * 22 12 11 24 24 C 1.46923 * 118.74111 * 53.30613 * 5 4 2 25 25 C 1.53189 * 108.77676 * 306.64600 * 24 5 4 26 26 C 1.53037 * 109.31333 * 54.63249 * 25 24 5 27 27 H 1.09001 * 109.45783 * 58.64192 * 26 25 24 28 28 O 1.42899 * 109.45942 * 178.61396 * 26 25 24 29 29 H 1.08997 * 109.46910 * 299.93868 * 1 2 3 30 30 H 1.09000 * 109.46724 * 59.94040 * 1 2 3 31 31 H 1.08999 * 109.47283 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.50710 * 65.65606 * 4 2 1 33 33 H 1.08995 * 109.43360 * 305.37139 * 4 2 1 34 34 H 1.07996 * 120.00251 * 359.97438 * 10 9 6 35 35 H 1.07998 * 119.99981 * 179.97438 * 11 10 9 36 36 H 1.09002 * 109.47152 * 330.00052 * 13 12 11 37 37 H 1.09001 * 109.46980 * 210.00152 * 13 12 11 38 38 H 0.97002 * 119.99739 * 180.02562 * 17 16 14 39 39 H 1.07998 * 120.00015 * 179.72855 * 22 12 11 40 40 H 1.08002 * 120.00314 * 180.27289 * 23 22 12 41 41 H 1.09009 * 109.58508 * 66.43374 * 24 5 4 42 42 H 1.09001 * 109.59243 * 186.71171 * 24 5 4 43 43 H 1.09008 * 109.49676 * 174.58449 * 25 24 5 44 44 H 1.08998 * 109.49891 * 294.64286 * 25 24 5 45 45 H 0.96706 * 114.00221 * 299.99712 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0422 -0.7187 -1.2469 5 7 3.5053 -0.8285 -1.1688 6 16 4.4595 -0.2833 -2.4076 7 8 5.7330 -0.0063 -1.8411 8 8 3.6928 0.6868 -3.1077 9 6 4.6917 -1.6307 -3.5190 10 6 3.8056 -1.8272 -4.5616 11 6 3.9874 -2.8846 -5.4333 12 6 5.0557 -3.7451 -5.2626 13 6 5.2537 -4.8982 -6.2125 14 6 6.1184 -4.4568 -7.3651 15 1 6.4880 -3.4428 -7.4055 16 6 6.4385 -5.3477 -8.3675 17 7 7.1935 -4.9626 -9.3731 18 14 5.7997 -7.1017 -8.2972 19 1 4.4876 -7.1787 -8.9883 20 1 6.7663 -8.0077 -8.9681 21 1 5.6375 -7.5130 -6.8796 22 6 5.9391 -3.5514 -4.2172 23 6 5.7605 -2.4908 -3.3488 24 6 4.1059 -1.4255 0.0318 25 6 3.5708 -0.6938 1.2667 26 6 2.0408 -0.7226 1.2486 27 1 1.6972 -1.7569 1.2355 28 8 1.5385 -0.0689 2.4159 29 1 -0.3633 0.5129 0.8905 30 1 -0.3633 0.5148 -0.8895 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7653 -0.1499 -2.1344 33 1 1.6033 -1.7151 -1.2972 34 1 2.9708 -1.1551 -4.6947 35 1 3.2949 -3.0383 -6.2476 36 1 4.2858 -5.2282 -6.5900 37 1 5.7392 -5.7214 -5.6884 38 1 7.4185 -5.5892 -10.0785 39 1 6.7712 -4.2263 -4.0813 40 1 6.4532 -2.3368 -2.5346 41 1 3.8386 -2.4808 0.0879 42 1 5.1903 -1.3252 -0.0136 43 1 3.9334 -1.1882 2.1680 44 1 3.9159 0.3400 1.2551 45 1 1.8218 -0.4749 3.2467 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885120098.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:32 Heat of formation + Delta-G solvation = -110.590550 kcal Electronic energy + Delta-G solvation = -27536.697181 eV Core-core repulsion = 23645.451949 eV Total energy + Delta-G solvation = -3891.245232 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.59477 -38.91430 -37.29377 -36.33291 -35.82375 -33.70779 -33.37615 -31.76851 -31.36311 -30.67249 -27.99143 -27.00755 -24.45924 -23.51190 -22.73668 -22.40543 -20.73400 -20.55655 -19.05321 -18.06758 -17.69680 -17.28335 -16.93153 -16.25477 -15.40755 -15.19656 -15.16184 -14.59588 -14.53058 -14.39024 -14.30589 -13.86373 -13.72542 -13.33669 -13.19055 -12.84417 -12.68441 -12.57281 -12.46582 -12.25655 -12.15202 -12.05462 -11.91819 -11.81091 -11.77972 -11.40221 -11.21319 -10.99732 -10.94806 -10.63843 -10.55164 -10.26761 -10.23507 -10.12051 -9.57613 -9.32507 -8.72511 -8.66665 -8.46928 -6.20412 -4.22079 0.36283 1.23333 1.70299 2.86808 3.18455 3.27024 3.27614 3.68866 3.79602 3.99970 4.19099 4.24717 4.28687 4.43642 4.63978 4.69232 4.78935 4.93891 5.05314 5.12253 5.15327 5.15985 5.19708 5.29764 5.31673 5.38834 5.47523 5.54728 5.63616 5.70386 5.73726 5.79359 5.80197 5.97037 6.02255 6.13041 6.21154 6.28794 6.43697 6.67315 6.67747 6.78758 7.26378 7.26438 7.27441 7.51483 8.32558 8.83200 9.37705 10.92103 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021959 B = 0.002609 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.785966 B =10731.460605 C =10971.526984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 H 0.083 0.917 4 C 0.123 3.877 5 N -1.001 6.001 6 S 2.694 3.306 7 O -0.961 6.961 8 O -0.960 6.960 9 C -0.701 4.701 10 C -0.022 4.022 11 C -0.143 4.143 12 C 0.031 3.969 13 C 0.006 3.994 14 C -0.521 4.521 15 H 0.075 0.925 16 C 0.072 3.928 17 N -0.894 5.894 18 Si 0.879 3.121 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.265 1.265 22 C -0.143 4.143 23 C -0.023 4.023 24 C 0.120 3.880 25 C -0.165 4.165 26 C 0.112 3.888 27 H 0.058 0.942 28 O -0.565 6.565 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.029 0.971 37 H 0.034 0.966 38 H 0.266 0.734 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.072 0.928 42 H 0.098 0.902 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.909 5.697 23.264 26.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.101 0.899 4 C -0.002 4.002 5 N -0.839 5.839 6 S 2.789 3.211 7 O -0.951 6.951 8 O -0.950 6.950 9 C -0.790 4.790 10 C -0.042 4.042 11 C -0.162 4.162 12 C 0.031 3.969 13 C -0.031 4.031 14 C -0.558 4.558 15 H 0.093 0.907 16 C -0.130 4.130 17 N -0.532 5.532 18 Si 0.706 3.294 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.190 1.190 22 C -0.162 4.162 23 C -0.042 4.042 24 C -0.005 4.005 25 C -0.204 4.204 26 C 0.053 3.947 27 H 0.076 0.924 28 O -0.371 6.371 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.091 0.909 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.090 0.910 42 H 0.117 0.883 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -11.744 6.865 22.545 26.331 hybrid contribution 0.107 -2.059 -0.106 2.064 sum -11.637 4.806 22.439 25.730 Atomic orbital electron populations 1.21706 0.93633 1.02120 1.02572 1.21371 0.96809 1.00730 0.92768 0.89904 1.21469 0.78463 1.01330 0.98964 1.57826 1.16245 1.78338 1.31448 1.01740 0.72803 0.73975 0.72590 1.93547 1.40196 1.83612 1.77743 1.93549 1.71415 1.56903 1.73144 1.30430 1.07638 1.23366 1.17573 1.20765 0.96069 0.95495 0.91848 1.21224 0.99508 0.95616 0.99811 1.20702 0.90139 0.94752 0.91352 1.18985 0.98083 0.91853 0.94163 1.20818 1.31044 0.99937 1.04021 0.90669 1.24990 0.94481 0.98640 0.94931 1.69889 1.36546 1.35835 1.10881 0.86786 0.79065 0.84754 0.78782 1.20027 1.21059 1.18950 1.21216 1.00270 0.98874 0.95796 1.20759 0.93720 0.91976 0.97755 1.21402 0.98923 0.97029 0.83184 1.22623 0.96751 1.02681 0.98354 1.21766 0.91824 0.95451 0.85693 0.92420 1.86521 1.75679 1.58950 1.15901 0.91437 0.92215 0.92612 0.88046 0.90872 0.85158 0.85211 0.95239 0.94817 0.92353 0.85233 0.85192 0.90980 0.88336 0.90325 0.90404 0.77658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.04 37.16 0.34 -0.70 16 2 C -0.10 -0.80 2.61 -90.72 -0.24 -1.04 16 3 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 4 C 0.12 1.07 5.73 -3.93 -0.02 1.05 16 5 N -1.00 -10.15 3.30 -113.77 -0.37 -10.52 16 6 S 2.69 37.07 5.73 -107.50 -0.62 36.46 16 7 O -0.96 -15.16 15.87 -57.17 -0.91 -16.06 16 8 O -0.96 -15.22 15.87 -57.17 -0.91 -16.13 16 9 C -0.70 -10.74 5.97 -39.58 -0.24 -10.98 16 10 C -0.02 -0.35 9.52 -39.58 -0.38 -0.73 16 11 C -0.14 -2.54 9.70 -39.58 -0.38 -2.93 16 12 C 0.03 0.61 5.07 -104.62 -0.53 0.08 16 13 C 0.01 0.14 4.17 -29.03 -0.12 0.02 16 14 C -0.52 -14.24 9.65 -34.44 -0.33 -14.57 16 15 H 0.08 2.28 7.98 -52.49 -0.42 1.86 16 16 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 17 N -0.89 -26.71 13.96 55.43 0.77 -25.94 16 18 Si 0.88 20.49 27.47 -169.99 -4.67 15.82 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 22 C -0.14 -2.54 9.70 -39.58 -0.38 -2.93 16 23 C -0.02 -0.36 9.52 -39.58 -0.38 -0.73 16 24 C 0.12 0.97 6.48 -3.71 -0.02 0.95 16 25 C -0.16 -1.14 5.70 -26.61 -0.15 -1.30 16 26 C 0.11 0.80 2.88 -26.69 -0.08 0.72 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 O -0.57 -4.10 12.59 -35.23 -0.44 -4.55 16 29 H 0.07 0.53 7.65 -51.93 -0.40 0.13 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.10 0.92 6.91 -51.93 -0.36 0.56 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.13 1.74 7.62 -52.49 -0.40 1.34 16 35 H 0.13 2.16 8.06 -52.49 -0.42 1.73 16 36 H 0.03 0.64 7.51 -51.93 -0.39 0.25 16 37 H 0.03 0.74 7.14 -51.93 -0.37 0.37 16 38 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.13 2.15 8.06 -52.49 -0.42 1.73 16 40 H 0.13 1.73 7.62 -52.49 -0.40 1.33 16 41 H 0.07 0.47 8.14 -51.92 -0.42 0.04 16 42 H 0.10 0.83 6.92 -51.93 -0.36 0.47 16 43 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 44 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.38 1.21 9.08 45.56 0.41 1.63 16 LS Contribution 374.75 15.07 5.65 5.65 Total: -1.00 -34.39 374.75 -10.59 -44.98 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.08 Total: 1.45 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: -3.02 Total: -31.16 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.40 Total: -36.46 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -2.26 Total: -36.74 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.67 Total: 15.82 kcal Atomic # 16 Polarization: 37.07 SS G_CDS: -0.62 Total: 36.46 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.39 -10.59 -44.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885120098.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.615 kcal (2) G-P(sol) polarization free energy of solvation -34.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds