Wall clock time and date at job start Tue Mar 31 2020 23:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.50059 * 2 1 4 4 C 1.53195 * 109.49899 * 120.10022 * 2 1 3 5 5 N 1.47207 * 108.85456 * 174.60016 * 4 2 1 6 6 S 1.65599 * 120.81135 * 126.34011 * 5 4 2 7 7 O 1.42097 * 106.40595 * 23.68001 * 6 5 4 8 8 O 1.42107 * 106.39956 * 156.60594 * 6 5 4 9 9 C 1.76205 * 107.21523 * 270.14190 * 6 5 4 10 10 C 1.38238 * 119.99908 * 269.72971 * 9 6 5 11 11 C 1.38237 * 119.99909 * 179.76851 * 10 9 6 12 12 C 1.38233 * 119.99748 * 0.48153 * 11 10 9 13 13 C 1.50705 * 120.00029 * 179.76971 * 12 11 10 14 14 C 1.50698 * 109.47203 * 270.02156 * 13 12 11 15 15 H 1.08002 * 119.99639 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00339 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99231 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00351 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46999 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47055 * 119.99832 * 18 16 14 21 21 H 1.48496 * 109.47218 * 240.00296 * 18 16 14 22 22 C 1.38237 * 120.00213 * 359.79501 * 12 11 10 23 23 C 1.38230 * 119.99902 * 90.00411 * 9 6 5 24 24 C 1.46926 * 118.55531 * 306.47735 * 5 4 2 25 25 C 1.53191 * 108.89109 * 53.54119 * 24 5 4 26 26 C 1.53035 * 109.31327 * 305.29292 * 25 24 5 27 27 H 1.09004 * 109.45879 * 181.37450 * 26 25 24 28 28 O 1.42900 * 109.45908 * 301.34319 * 26 25 24 29 29 H 1.08991 * 109.47122 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46483 * 300.06376 * 1 2 3 31 31 H 1.08994 * 109.46935 * 60.05876 * 1 2 3 32 32 H 1.08996 * 109.58670 * 294.37379 * 4 2 1 33 33 H 1.09002 * 109.58549 * 54.65190 * 4 2 1 34 34 H 1.08003 * 120.00054 * 359.97438 * 10 9 6 35 35 H 1.08001 * 120.00277 * 180.25310 * 11 10 9 36 36 H 1.09004 * 109.46894 * 30.02074 * 13 12 11 37 37 H 1.09000 * 109.47132 * 150.02010 * 13 12 11 38 38 H 0.97000 * 119.99502 * 179.97438 * 17 16 14 39 39 H 1.08001 * 119.99924 * 179.97438 * 22 12 11 40 40 H 1.08001 * 120.00201 * 359.97438 * 23 9 6 41 41 H 1.09002 * 109.58861 * 293.68122 * 24 5 4 42 42 H 1.08996 * 109.58519 * 173.40013 * 24 5 4 43 43 H 1.09003 * 109.49975 * 65.24379 * 25 24 5 44 44 H 1.09004 * 109.49655 * 185.34207 * 25 24 5 45 45 H 0.96701 * 114.00447 * 299.99858 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7242 1.2494 5 7 3.5075 -0.8304 1.1711 6 16 4.4646 -0.2870 2.4084 7 8 3.6559 -0.3002 3.5768 8 8 5.6932 -0.9936 2.3054 9 6 4.8339 1.4039 2.0781 10 6 5.9577 1.7353 1.3444 11 6 6.2449 3.0617 1.0812 12 6 5.4138 4.0570 1.5601 13 6 5.7297 5.5033 1.2776 14 6 6.6024 6.0510 2.3773 15 1 6.8989 5.4152 3.1985 16 6 7.0230 7.3633 2.3347 17 7 6.6622 8.1372 1.3344 18 14 8.1054 8.0420 3.6975 19 1 8.3678 6.9766 4.6981 20 1 9.3926 8.5076 3.1218 21 1 7.4166 9.1811 4.3557 22 6 4.2932 3.7259 2.2987 23 6 4.0031 2.3993 2.5575 24 6 4.1053 -1.4268 -0.0313 25 6 3.5708 -0.6947 -1.2663 26 6 2.0408 -0.7227 -1.2486 27 1 1.6582 -0.2236 -2.1389 28 8 1.5897 -2.0785 -1.2319 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5149 0.8895 31 1 -0.3633 0.5129 -0.8905 32 1 1.7638 -0.1587 2.1388 33 1 1.6033 -1.7211 1.2988 34 1 6.6095 0.9579 0.9740 35 1 7.1206 3.3205 0.5045 36 1 6.2537 5.5813 0.3250 37 1 4.8029 6.0751 1.2304 38 1 6.9578 9.0606 1.3046 39 1 3.6441 4.5036 2.6732 40 1 3.1274 2.1405 3.1341 41 1 3.8375 -2.4819 -0.0876 42 1 5.1898 -1.3269 0.0118 43 1 3.9159 0.3392 -1.2540 44 1 3.9333 -1.1891 -2.1675 45 1 1.8758 -2.5977 -1.9959 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885120099.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:36 Heat of formation + Delta-G solvation = -113.974216 kcal Electronic energy + Delta-G solvation = -28053.339493 eV Core-core repulsion = 24161.947535 eV Total energy + Delta-G solvation = -3891.391959 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.60311 -38.80600 -37.21013 -35.84352 -35.71840 -33.69129 -33.34548 -31.56705 -31.30681 -30.58599 -27.43956 -26.88829 -24.64717 -23.72398 -22.60852 -22.31901 -20.90305 -20.23949 -18.95008 -17.93066 -17.35939 -17.17948 -16.46414 -16.14002 -15.36580 -15.12953 -15.04139 -14.79897 -14.39952 -14.37472 -14.24996 -13.89976 -13.66440 -13.13264 -12.94801 -12.87375 -12.53430 -12.48194 -12.24491 -12.18111 -11.97638 -11.85226 -11.71936 -11.70001 -11.50621 -11.24651 -11.17721 -10.95777 -10.94239 -10.63197 -10.50725 -10.47712 -10.20651 -9.75458 -9.65904 -9.10343 -8.60511 -8.55757 -8.38239 -6.18984 -4.23852 0.46810 1.32562 1.78042 2.97312 3.22047 3.30165 3.35573 3.79309 3.94996 4.08169 4.30632 4.32666 4.36926 4.53221 4.67575 4.77206 4.85686 5.08836 5.14237 5.16705 5.20672 5.22864 5.30590 5.44185 5.47243 5.48980 5.61543 5.70670 5.74436 5.79659 5.81719 5.88227 5.89902 6.03280 6.15454 6.23792 6.31641 6.40295 6.53399 6.82459 6.89073 7.27489 7.35047 7.41636 7.57116 7.76461 8.11604 8.81256 9.41306 10.91091 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017496 B = 0.003015 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.013728 B = 9284.405143 C = 9842.475646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.101 4.101 3 H 0.089 0.911 4 C 0.132 3.868 5 N -0.998 5.998 6 S 2.694 3.306 7 O -0.963 6.963 8 O -0.964 6.964 9 C -0.703 4.703 10 C -0.024 4.024 11 C -0.145 4.145 12 C 0.026 3.974 13 C 0.039 3.961 14 C -0.517 4.517 15 H 0.059 0.941 16 C 0.060 3.940 17 N -0.891 5.891 18 Si 0.898 3.102 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.145 4.145 23 C -0.023 4.023 24 C 0.128 3.872 25 C -0.172 4.172 26 C 0.114 3.886 27 H 0.056 0.944 28 O -0.561 6.561 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.263 0.737 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.604 -19.073 -7.508 23.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 H 0.107 0.893 4 C 0.007 3.993 5 N -0.835 5.835 6 S 2.788 3.212 7 O -0.953 6.953 8 O -0.954 6.954 9 C -0.792 4.792 10 C -0.043 4.043 11 C -0.164 4.164 12 C 0.025 3.975 13 C 0.003 3.997 14 C -0.555 4.555 15 H 0.078 0.922 16 C -0.142 4.142 17 N -0.530 5.530 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.164 4.164 23 C -0.043 4.043 24 C 0.003 3.997 25 C -0.211 4.211 26 C 0.055 3.945 27 H 0.074 0.926 28 O -0.366 6.366 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.095 0.905 42 H 0.107 0.893 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -10.573 -19.221 -6.276 22.818 hybrid contribution 0.972 1.201 -0.309 1.576 sum -9.602 -18.020 -6.586 21.454 Atomic orbital electron populations 1.21715 0.93837 1.02662 1.01909 1.21565 0.96745 0.99524 0.94309 0.89306 1.21446 0.78153 1.01866 0.97816 1.57849 1.16099 1.75101 1.34466 1.01762 0.72751 0.73965 0.72732 1.93546 1.69490 1.87403 1.44861 1.93544 1.43847 1.71801 1.86205 1.30431 1.07668 1.23322 1.17828 1.20748 0.93310 0.97289 0.92979 1.21236 1.00626 0.91966 1.02593 1.21106 0.90012 0.98683 0.87662 1.18538 0.98042 0.85037 0.98119 1.21012 1.31011 0.96104 1.07368 0.92237 1.25006 0.96231 0.96841 0.96089 1.69958 1.45171 1.07161 1.30691 0.86423 0.80151 0.79028 0.81826 1.19559 1.20796 1.20782 1.21240 0.98898 0.95590 1.00658 1.20754 0.96637 0.92746 0.94143 1.21277 0.97781 0.97527 0.83142 1.22661 0.97011 1.02810 0.98594 1.21703 0.92211 0.83013 0.97590 0.92570 1.86514 1.77918 1.22842 1.49348 0.91624 0.92294 0.92536 0.89322 0.90120 0.85440 0.85415 0.94759 0.94742 0.92687 0.85389 0.85403 0.90539 0.89268 0.90056 0.90452 0.77865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.07 37.16 0.34 -0.77 16 2 C -0.10 -0.88 2.71 -90.50 -0.24 -1.13 16 3 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 4 C 0.13 1.33 5.43 -3.56 -0.02 1.31 16 5 N -1.00 -11.12 3.30 -113.31 -0.37 -11.49 16 6 S 2.69 38.99 5.69 -107.50 -0.61 38.38 16 7 O -0.96 -15.98 16.02 -57.17 -0.92 -16.90 16 8 O -0.96 -15.84 15.99 -57.17 -0.91 -16.76 16 9 C -0.70 -11.11 5.97 -39.58 -0.24 -11.35 16 10 C -0.02 -0.38 9.52 -39.58 -0.38 -0.76 16 11 C -0.15 -2.67 9.70 -39.58 -0.38 -3.05 16 12 C 0.03 0.53 5.07 -104.62 -0.53 0.00 16 13 C 0.04 0.96 5.10 -29.03 -0.15 0.81 16 14 C -0.52 -13.99 9.09 -34.44 -0.31 -14.30 16 15 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -25.42 13.29 55.43 0.74 -24.68 16 18 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 C -0.14 -2.67 9.70 -39.58 -0.38 -3.05 16 23 C -0.02 -0.38 9.52 -39.58 -0.38 -0.76 16 24 C 0.13 1.17 6.13 -3.71 -0.02 1.15 16 25 C -0.17 -1.27 5.80 -26.61 -0.15 -1.43 16 26 C 0.11 0.85 3.19 -26.69 -0.09 0.76 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 O -0.56 -3.98 11.43 -35.23 -0.40 -4.38 16 29 H 0.06 0.53 7.72 -51.93 -0.40 0.13 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.90 7.15 -51.93 -0.37 0.53 16 33 H 0.08 0.80 7.81 -51.93 -0.41 0.39 16 34 H 0.13 1.77 7.61 -52.48 -0.40 1.37 16 35 H 0.13 2.23 8.06 -52.49 -0.42 1.80 16 36 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 37 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 38 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.13 2.24 8.06 -52.49 -0.42 1.82 16 40 H 0.13 1.79 7.62 -52.49 -0.40 1.39 16 41 H 0.08 0.63 7.81 -51.93 -0.41 0.22 16 42 H 0.09 0.83 7.12 -51.93 -0.37 0.46 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.37 1.26 9.08 45.56 0.41 1.68 16 LS Contribution 377.17 15.07 5.68 5.68 Total: -1.00 -33.09 377.17 -10.96 -44.05 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -6.10 Total: 1.04 kcal Atomic # 6 Polarization: -27.97 SS G_CDS: -3.04 Total: -31.01 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.36 Total: -36.18 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -2.23 Total: -38.03 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 38.99 SS G_CDS: -0.61 Total: 38.38 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.09 -10.96 -44.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885120099.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.926 kcal (2) G-P(sol) polarization free energy of solvation -33.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds