Wall clock time and date at job start Tue Mar 31 2020 23:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.50059 * 2 1 4 4 C 1.53195 * 109.49899 * 120.10022 * 2 1 3 5 5 N 1.47207 * 108.85456 * 174.60016 * 4 2 1 6 6 S 1.65599 * 120.81135 * 126.34011 * 5 4 2 7 7 O 1.42097 * 106.40595 * 23.68001 * 6 5 4 8 8 O 1.42107 * 106.39956 * 156.60594 * 6 5 4 9 9 C 1.76205 * 107.21523 * 270.14190 * 6 5 4 10 10 C 1.38238 * 119.99908 * 269.72971 * 9 6 5 11 11 C 1.38237 * 119.99909 * 179.76851 * 10 9 6 12 12 C 1.38233 * 119.99748 * 0.48153 * 11 10 9 13 13 C 1.50705 * 120.00029 * 179.76971 * 12 11 10 14 14 C 1.50698 * 109.47203 * 270.02156 * 13 12 11 15 15 H 1.08002 * 119.99639 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00339 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99231 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00351 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46999 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47055 * 119.99832 * 18 16 14 21 21 H 1.48496 * 109.47218 * 240.00296 * 18 16 14 22 22 C 1.38237 * 120.00213 * 359.79501 * 12 11 10 23 23 C 1.38230 * 119.99902 * 90.00411 * 9 6 5 24 24 C 1.46926 * 118.55531 * 306.47735 * 5 4 2 25 25 C 1.53191 * 108.89109 * 53.54119 * 24 5 4 26 26 C 1.53035 * 109.31327 * 305.29292 * 25 24 5 27 27 H 1.09004 * 109.45879 * 181.37450 * 26 25 24 28 28 O 1.42900 * 109.45908 * 301.34319 * 26 25 24 29 29 H 1.08991 * 109.47122 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46483 * 300.06376 * 1 2 3 31 31 H 1.08994 * 109.46935 * 60.05876 * 1 2 3 32 32 H 1.08996 * 109.58670 * 294.37379 * 4 2 1 33 33 H 1.09002 * 109.58549 * 54.65190 * 4 2 1 34 34 H 1.08003 * 120.00054 * 359.97438 * 10 9 6 35 35 H 1.08001 * 120.00277 * 180.25310 * 11 10 9 36 36 H 1.09004 * 109.46894 * 30.02074 * 13 12 11 37 37 H 1.09000 * 109.47132 * 150.02010 * 13 12 11 38 38 H 0.97000 * 119.99502 * 179.97438 * 17 16 14 39 39 H 1.08001 * 119.99924 * 179.97438 * 22 12 11 40 40 H 1.08001 * 120.00201 * 359.97438 * 23 9 6 41 41 H 1.09002 * 109.58861 * 293.68122 * 24 5 4 42 42 H 1.08996 * 109.58519 * 173.40013 * 24 5 4 43 43 H 1.09003 * 109.49975 * 65.24379 * 25 24 5 44 44 H 1.09004 * 109.49655 * 185.34207 * 25 24 5 45 45 H 0.96701 * 114.00447 * 299.99858 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7242 1.2494 5 7 3.5075 -0.8304 1.1711 6 16 4.4646 -0.2870 2.4084 7 8 3.6559 -0.3002 3.5768 8 8 5.6932 -0.9936 2.3054 9 6 4.8339 1.4039 2.0781 10 6 5.9577 1.7353 1.3444 11 6 6.2449 3.0617 1.0812 12 6 5.4138 4.0570 1.5601 13 6 5.7297 5.5033 1.2776 14 6 6.6024 6.0510 2.3773 15 1 6.8989 5.4152 3.1985 16 6 7.0230 7.3633 2.3347 17 7 6.6622 8.1372 1.3344 18 14 8.1054 8.0420 3.6975 19 1 8.3678 6.9766 4.6981 20 1 9.3926 8.5076 3.1218 21 1 7.4166 9.1811 4.3557 22 6 4.2932 3.7259 2.2987 23 6 4.0031 2.3993 2.5575 24 6 4.1053 -1.4268 -0.0313 25 6 3.5708 -0.6947 -1.2663 26 6 2.0408 -0.7227 -1.2486 27 1 1.6582 -0.2236 -2.1389 28 8 1.5897 -2.0785 -1.2319 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5149 0.8895 31 1 -0.3633 0.5129 -0.8905 32 1 1.7638 -0.1587 2.1388 33 1 1.6033 -1.7211 1.2988 34 1 6.6095 0.9579 0.9740 35 1 7.1206 3.3205 0.5045 36 1 6.2537 5.5813 0.3250 37 1 4.8029 6.0751 1.2304 38 1 6.9578 9.0606 1.3046 39 1 3.6441 4.5036 2.6732 40 1 3.1274 2.1405 3.1341 41 1 3.8375 -2.4819 -0.0876 42 1 5.1898 -1.3269 0.0118 43 1 3.9159 0.3392 -1.2540 44 1 3.9333 -1.1891 -2.1675 45 1 1.8758 -2.5977 -1.9959 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885120099.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:35 Heat of formation + Delta-G solvation = -136.579063 kcal Electronic energy + Delta-G solvation = -28054.319713 eV Core-core repulsion = 24161.947535 eV Total energy + Delta-G solvation = -3892.372178 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.29254 -40.20104 -38.44974 -37.01434 -36.45359 -35.60537 -34.02482 -33.32600 -32.01212 -31.93401 -29.25203 -27.55775 -25.64241 -25.34422 -23.75213 -23.23141 -22.45261 -20.99016 -19.99167 -19.05280 -18.61860 -18.45028 -17.75197 -17.21833 -16.85723 -16.22858 -16.01002 -15.94418 -15.61013 -15.48428 -15.24927 -14.92667 -14.64235 -14.49350 -14.41813 -13.95370 -13.62789 -13.46232 -13.41930 -13.40923 -13.36601 -13.23533 -12.86123 -12.76824 -12.69652 -12.67455 -12.38733 -12.16183 -12.05466 -11.94052 -11.84615 -11.66001 -11.46006 -11.20468 -10.77809 -10.66659 -10.02508 -9.97448 -9.85513 -8.28240 -6.40770 -0.69411 -0.07258 0.38605 1.36487 1.38149 1.50713 1.90643 2.34093 2.56885 2.77690 3.04526 3.19250 3.45195 3.63409 3.83711 3.88546 3.95422 4.04438 4.08436 4.14246 4.16467 4.42606 4.44659 4.46464 4.55441 4.66027 4.76899 4.80273 4.86612 4.89701 4.90741 4.93632 5.09357 5.11392 5.18675 5.23189 5.25330 5.25813 5.32067 5.33160 5.51846 5.62479 5.66367 5.85237 5.91292 6.09064 6.71179 7.03169 7.28430 8.81990 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017496 B = 0.003015 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.013728 B = 9284.405143 C = 9842.475646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 H 0.081 0.919 4 C 0.127 3.873 5 N -0.990 5.990 6 S 2.714 3.286 7 O -0.983 6.983 8 O -0.980 6.980 9 C -0.699 4.699 10 C -0.018 4.018 11 C -0.153 4.153 12 C -0.003 4.003 13 C 0.049 3.951 14 C -0.533 4.533 15 H 0.053 0.947 16 C 0.010 3.990 17 N -0.925 5.925 18 Si 0.964 3.036 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.153 4.153 23 C -0.019 4.019 24 C 0.118 3.882 25 C -0.168 4.168 26 C 0.117 3.883 27 H 0.066 0.934 28 O -0.571 6.571 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.154 0.846 35 H 0.130 0.870 36 H 0.014 0.986 37 H 0.013 0.987 38 H 0.267 0.733 39 H 0.129 0.871 40 H 0.152 0.848 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.070 0.930 44 H 0.103 0.897 45 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.891 -20.990 -7.658 24.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.125 4.125 3 H 0.099 0.901 4 C 0.003 3.997 5 N -0.829 5.829 6 S 2.806 3.194 7 O -0.973 6.973 8 O -0.971 6.971 9 C -0.786 4.786 10 C -0.038 4.038 11 C -0.172 4.172 12 C -0.003 4.003 13 C 0.012 3.988 14 C -0.571 4.571 15 H 0.071 0.929 16 C -0.189 4.189 17 N -0.564 5.564 18 Si 0.788 3.212 19 H -0.193 1.193 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.172 4.172 23 C -0.039 4.039 24 C -0.006 4.006 25 C -0.207 4.207 26 C 0.058 3.942 27 H 0.084 0.916 28 O -0.379 6.379 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.172 0.828 35 H 0.148 0.852 36 H 0.032 0.968 37 H 0.032 0.968 38 H 0.076 0.924 39 H 0.147 0.853 40 H 0.170 0.830 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.089 0.911 44 H 0.122 0.878 45 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -10.852 -21.131 -6.441 24.613 hybrid contribution 0.979 1.643 -0.321 1.939 sum -9.873 -19.488 -6.762 22.869 Atomic orbital electron populations 1.21680 0.93148 1.02630 1.02286 1.21588 0.97334 0.99158 0.94421 0.90076 1.21601 0.77215 1.02373 0.98524 1.57634 1.16310 1.74370 1.34564 1.01152 0.72369 0.73058 0.72825 1.93517 1.69812 1.87380 1.46582 1.93520 1.45163 1.71731 1.86668 1.30849 1.07017 1.24474 1.16285 1.20989 0.93597 0.96818 0.92353 1.21293 1.00500 0.92599 1.02779 1.20811 0.92149 0.96894 0.90465 1.18261 0.96313 0.87697 0.96541 1.21317 1.31461 0.96486 1.07861 0.92908 1.25852 0.97514 0.97174 0.98355 1.70059 1.46341 1.07588 1.32405 0.85412 0.78491 0.78327 0.78934 1.19294 1.20009 1.20027 1.21287 0.98432 0.96834 1.00641 1.20980 0.97359 0.91757 0.93761 1.21559 0.97834 0.98419 0.82795 1.22659 0.97018 1.02220 0.98791 1.21620 0.92068 0.83355 0.97131 0.91582 1.86477 1.78083 1.22692 1.50661 0.91783 0.92220 0.91931 0.89662 0.89579 0.82841 0.85186 0.96776 0.96825 0.92369 0.85270 0.83035 0.89140 0.89327 0.91142 0.87833 0.75881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.07 71.98 0.65 -1.27 16 2 C -0.10 -1.64 2.71 -10.72 -0.03 -1.67 16 3 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 4 C 0.13 2.33 5.43 86.31 0.47 2.80 16 5 N -0.99 -20.02 3.30 -512.40 -1.69 -21.71 16 6 S 2.71 73.80 5.69 -56.49 -0.32 73.48 16 7 O -0.98 -31.05 16.02 -128.00 -2.05 -33.10 16 8 O -0.98 -30.34 15.99 -128.00 -2.05 -32.39 16 9 C -0.70 -21.13 5.97 22.27 0.13 -20.99 16 10 C -0.02 -0.57 9.52 22.27 0.21 -0.36 16 11 C -0.15 -5.64 9.70 22.27 0.22 -5.42 16 12 C 0.00 -0.12 5.07 -19.86 -0.10 -0.22 16 13 C 0.05 2.49 5.10 29.10 0.15 2.63 16 14 C -0.53 -29.67 9.09 25.60 0.23 -29.43 16 15 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 16 C 0.01 0.56 5.46 84.65 0.46 1.02 16 17 N -0.92 -53.90 13.29 21.45 0.28 -53.61 16 18 Si 0.96 43.59 29.54 68.60 2.03 45.61 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 22 C -0.15 -5.70 9.70 22.27 0.22 -5.48 16 23 C -0.02 -0.61 9.52 22.27 0.21 -0.40 16 24 C 0.12 1.86 6.13 86.36 0.53 2.39 16 25 C -0.17 -2.03 5.80 30.67 0.18 -1.85 16 26 C 0.12 1.44 3.19 30.62 0.10 1.54 16 27 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 28 O -0.57 -6.41 11.43 -148.98 -1.70 -8.11 16 29 H 0.06 0.91 7.72 -2.39 -0.02 0.89 16 30 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.09 1.61 7.15 -2.39 -0.02 1.59 16 33 H 0.09 1.51 7.81 -2.39 -0.02 1.50 16 34 H 0.15 3.94 7.61 -2.91 -0.02 3.91 16 35 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 36 H 0.01 0.75 8.09 -2.39 -0.02 0.73 16 37 H 0.01 0.72 8.09 -2.39 -0.02 0.71 16 38 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 39 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 40 H 0.15 4.01 7.62 -2.91 -0.02 3.99 16 41 H 0.09 1.21 7.81 -2.39 -0.02 1.19 16 42 H 0.09 1.42 7.12 -2.39 -0.02 1.40 16 43 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.39 1.35 9.08 -74.06 -0.67 0.67 16 Total: -1.00 -71.03 377.17 -1.55 -72.58 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.32 Total: 13.97 kcal Atomic # 6 Polarization: -60.35 SS G_CDS: 3.63 Total: -56.72 kcal Atomic # 7 Polarization: -73.91 SS G_CDS: -1.41 Total: -75.32 kcal Atomic # 8 Polarization: -67.80 SS G_CDS: -5.80 Total: -73.60 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: 73.80 SS G_CDS: -0.32 Total: 73.48 kcal Total: -71.03 -1.55 -72.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885120099.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.996 kcal (2) G-P(sol) polarization free energy of solvation -71.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds