Wall clock time and date at job start Tue Mar 31 2020 23:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 110.63525 * 2 1 4 4 C 1.55150 * 110.72059 * 236.66508 * 2 1 3 5 5 C 1.54910 * 101.58269 * 206.13104 * 4 2 1 6 6 N 1.47423 * 104.82895 * 37.00917 * 5 4 2 7 7 S 1.65606 * 125.64808 * 155.89279 * 6 5 4 8 8 O 1.42098 * 106.39960 * 29.50515 * 7 6 5 9 9 O 1.42100 * 106.40366 * 162.42948 * 7 6 5 10 10 C 1.76204 * 107.21585 * 275.96956 * 7 6 5 11 11 C 1.38240 * 119.99880 * 269.72329 * 10 7 6 12 12 C 1.38227 * 120.00024 * 179.76710 * 11 10 7 13 13 C 1.38237 * 120.00052 * 0.51100 * 12 11 10 14 14 C 1.50697 * 120.00170 * 179.72616 * 13 12 11 15 15 C 1.50705 * 109.46919 * 270.01678 * 14 13 12 16 16 H 1.08001 * 120.00136 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99823 * 180.02562 * 15 14 13 18 18 N 1.31507 * 120.00423 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99589 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47481 * 60.00095 * 19 17 15 21 21 H 1.48502 * 109.46926 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47370 * 299.99718 * 19 17 15 23 23 C 1.38243 * 119.99720 * 359.74215 * 13 12 11 24 24 C 1.38229 * 120.00152 * 90.00339 * 10 7 6 25 25 C 1.47024 * 108.70666 * 335.87217 * 6 5 4 26 26 H 1.09002 * 110.01474 * 120.54901 * 25 6 5 27 27 C 1.52995 * 109.88188 * 241.64326 * 25 6 5 28 28 O 1.42903 * 109.47524 * 61.75913 * 27 25 6 29 29 H 1.09001 * 109.46807 * 296.85495 * 1 2 3 30 30 H 1.08998 * 109.47228 * 56.85433 * 1 2 3 31 31 H 1.09003 * 109.46686 * 176.86205 * 1 2 3 32 32 H 1.09003 * 111.00456 * 324.20870 * 4 2 1 33 33 H 1.09002 * 111.00395 * 88.05937 * 4 2 1 34 34 H 1.08999 * 110.36596 * 155.84406 * 5 4 2 35 35 H 1.08996 * 110.36922 * 278.06448 * 5 4 2 36 36 H 1.08001 * 119.99756 * 0.02562 * 11 10 7 37 37 H 1.08001 * 120.00342 * 180.23260 * 12 11 10 38 38 H 1.08990 * 109.47404 * 30.01488 * 14 13 12 39 39 H 1.09003 * 109.47317 * 150.02022 * 14 13 12 40 40 H 0.97005 * 120.00448 * 180.02562 * 18 17 15 41 41 H 1.08001 * 119.99366 * 179.97438 * 23 13 12 42 42 H 1.08000 * 120.00157 * 359.97438 * 24 10 7 43 43 H 1.09002 * 109.47531 * 181.75869 * 27 25 6 44 44 H 1.09001 * 109.47215 * 301.75350 * 27 25 6 45 45 H 0.96692 * 114.00518 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0790 -0.7975 -1.2124 5 6 3.4634 -1.2508 -0.6854 6 7 3.2446 -1.5493 0.7416 7 16 4.1633 -2.5714 1.6657 8 8 5.4747 -2.5364 1.1197 9 8 3.8768 -2.2538 3.0208 10 6 3.5564 -4.2038 1.3983 11 6 2.5569 -4.7109 2.2076 12 6 2.0774 -5.9897 1.9947 13 6 2.6046 -6.7655 0.9793 14 6 2.0862 -8.1620 0.7511 15 6 2.8906 -9.1367 1.5721 16 1 3.6968 -8.7807 2.1963 17 6 2.5978 -10.4833 1.5255 18 7 1.6171 -10.9171 0.7644 19 14 3.5944 -11.6914 2.5437 20 1 3.4699 -11.3468 3.9827 21 1 3.0844 -13.0677 2.3179 22 1 5.0215 -11.6204 2.1394 23 6 3.6078 -6.2603 0.1733 24 6 4.0836 -4.9795 0.3829 25 6 2.0761 -0.7891 1.2086 26 1 1.3121 -1.4711 1.5818 27 6 2.4944 0.1796 2.3165 28 8 3.4453 1.1127 1.7994 29 1 -0.3633 0.4642 0.9169 30 1 -0.3633 0.5619 -0.8604 31 1 -0.3633 -1.0262 -0.0563 32 1 1.4452 -1.6560 -1.4347 33 1 2.1850 -0.1553 -2.0868 34 1 3.7961 -2.1446 -1.2132 35 1 4.1936 -0.4498 -0.7994 36 1 2.1478 -4.1062 3.0035 37 1 1.2939 -6.3845 2.6246 38 1 1.0390 -8.2139 1.0487 39 1 2.1768 -8.4152 -0.3052 40 1 1.4108 -11.8644 0.7319 41 1 4.0200 -6.8666 -0.6197 42 1 4.8674 -4.5849 -0.2468 43 1 1.6183 0.7171 2.6792 44 1 2.9433 -0.3794 3.1375 45 1 3.7557 1.7586 2.4486 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885127263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:15 Heat of formation + Delta-G solvation = -131.364273 kcal Electronic energy + Delta-G solvation = -27888.415005 eV Core-core repulsion = 23996.268957 eV Total energy + Delta-G solvation = -3892.146048 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.26661 -40.22240 -38.43357 -37.09375 -36.91448 -35.61403 -33.48978 -33.33621 -32.00347 -31.32596 -29.26868 -28.11397 -25.60563 -24.84595 -23.76108 -23.01197 -22.42538 -21.22650 -20.06720 -18.90637 -18.72248 -18.55966 -17.93039 -17.21533 -16.88661 -16.63772 -16.01855 -15.90060 -15.67511 -15.28649 -14.88823 -14.69462 -14.62847 -14.49292 -14.34579 -13.94761 -13.82798 -13.68053 -13.43836 -13.42441 -13.32109 -13.21230 -13.02180 -12.79954 -12.68086 -12.66884 -12.34250 -12.16262 -12.07279 -11.73255 -11.71116 -11.53760 -11.47087 -11.37726 -10.72073 -10.66132 -10.08387 -10.00234 -9.90462 -8.28117 -6.41114 -0.73862 -0.09939 0.36003 1.37932 1.39491 1.48004 1.93065 2.34043 2.55698 2.75612 3.04485 3.08075 3.38311 3.58760 3.77846 3.88966 3.93030 3.96197 4.12914 4.22037 4.38834 4.42930 4.44339 4.47525 4.58146 4.65610 4.75082 4.77793 4.85969 4.87114 4.87840 5.04922 5.06853 5.16453 5.19670 5.21696 5.24288 5.25529 5.30002 5.34576 5.50489 5.61206 5.65654 5.83200 5.89117 6.08175 6.70304 6.92714 7.28009 8.81777 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020269 B = 0.002844 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.101428 B = 9843.484101 C =10294.899022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 H 0.096 0.904 4 C -0.122 4.122 5 C 0.114 3.886 6 N -0.998 5.998 7 S 2.731 3.269 8 O -0.984 6.984 9 O -0.974 6.974 10 C -0.703 4.703 11 C -0.018 4.018 12 C -0.153 4.153 13 C -0.002 4.002 14 C 0.049 3.951 15 C -0.537 4.537 16 H 0.053 0.947 17 C 0.011 3.989 18 N -0.925 5.925 19 Si 0.964 3.036 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.269 1.269 23 C -0.153 4.153 24 C -0.022 4.022 25 C 0.144 3.856 26 H 0.096 0.904 27 C 0.041 3.959 28 O -0.580 6.580 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.156 0.844 37 H 0.132 0.868 38 H 0.015 0.985 39 H 0.014 0.986 40 H 0.268 0.732 41 H 0.131 0.869 42 H 0.151 0.849 43 H 0.081 0.919 44 H 0.058 0.942 45 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.927 26.182 -1.747 26.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 H 0.114 0.886 4 C -0.160 4.160 5 C -0.010 4.010 6 N -0.837 5.837 7 S 2.825 3.175 8 O -0.974 6.974 9 O -0.965 6.965 10 C -0.790 4.790 11 C -0.037 4.037 12 C -0.172 4.172 13 C -0.003 4.003 14 C 0.013 3.987 15 C -0.574 4.574 16 H 0.072 0.928 17 C -0.188 4.188 18 N -0.564 5.564 19 Si 0.788 3.212 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.194 1.194 23 C -0.172 4.172 24 C -0.041 4.041 25 C 0.038 3.962 26 H 0.114 0.886 27 C -0.039 4.039 28 O -0.388 6.388 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.173 0.827 37 H 0.150 0.850 38 H 0.033 0.967 39 H 0.032 0.968 40 H 0.077 0.923 41 H 0.149 0.851 42 H 0.169 0.831 43 H 0.099 0.901 44 H 0.076 0.924 45 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -1.361 25.849 -1.747 25.944 hybrid contribution 0.079 -1.580 0.711 1.734 sum -1.282 24.269 -1.036 24.325 Atomic orbital electron populations 1.21810 0.92855 1.02402 1.02965 1.22172 0.96464 0.99721 0.92181 0.88614 1.22892 0.94395 1.00566 0.98186 1.22177 0.99300 1.01134 0.78403 1.58344 1.45248 1.57306 1.22775 1.00561 0.72424 0.72245 0.72305 1.93518 1.36520 1.87219 1.80173 1.93476 1.85360 1.83706 1.33916 1.30884 1.13709 1.25268 1.09143 1.21005 0.91929 0.95151 0.95628 1.21316 1.02330 0.94648 0.98882 1.20836 0.92136 0.95349 0.91936 1.18253 0.95855 0.87954 0.96684 1.21266 1.17059 0.92125 1.26981 0.92846 1.25854 0.96233 1.00197 0.96548 1.70041 1.30563 1.15794 1.39987 0.85521 0.78934 0.77594 0.79168 1.19335 1.20305 1.19434 1.21301 0.98202 0.96201 1.01501 1.20998 0.95878 0.93223 0.94020 1.21865 0.86313 0.92112 0.95863 0.88606 1.22955 0.93391 0.91674 0.95833 1.86423 1.62570 1.47302 1.42480 0.91653 0.91048 0.92570 0.90379 0.88138 0.90598 0.90851 0.82667 0.84984 0.96709 0.96812 0.92322 0.85142 0.83116 0.90088 0.92394 0.75809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.14 71.98 0.66 -0.79 16 2 C -0.09 -1.14 2.97 -9.61 -0.03 -1.16 16 3 H 0.10 1.31 7.08 -2.39 -0.02 1.30 16 4 C -0.12 -1.63 6.53 31.98 0.21 -1.42 16 5 C 0.11 2.11 7.04 86.86 0.61 2.72 16 6 N -1.00 -21.94 3.31 -484.29 -1.60 -23.55 16 7 S 2.73 78.10 5.86 -56.49 -0.33 77.77 16 8 O -0.98 -33.15 16.95 -128.00 -2.17 -35.32 16 9 O -0.97 -30.07 14.46 -128.00 -1.85 -31.92 16 10 C -0.70 -22.15 5.97 22.27 0.13 -22.01 16 11 C -0.02 -0.58 9.52 22.27 0.21 -0.36 16 12 C -0.15 -5.75 9.70 22.27 0.22 -5.54 16 13 C 0.00 -0.10 5.07 -19.86 -0.10 -0.20 16 14 C 0.05 2.54 5.10 29.10 0.15 2.69 16 15 C -0.54 -30.01 9.09 25.60 0.23 -29.78 16 16 H 0.05 2.97 7.74 -2.91 -0.02 2.94 16 17 C 0.01 0.61 5.46 84.66 0.46 1.07 16 18 N -0.92 -54.19 13.29 21.45 0.28 -53.90 16 19 Si 0.96 43.66 29.54 68.60 2.03 45.68 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 23 C -0.15 -5.85 9.70 22.27 0.22 -5.63 16 24 C -0.02 -0.72 9.52 22.27 0.21 -0.51 16 25 C 0.14 2.54 3.01 45.34 0.14 2.68 16 26 H 0.10 1.53 7.82 -2.39 -0.02 1.51 16 27 C 0.04 0.69 6.63 71.98 0.48 1.16 16 28 O -0.58 -9.76 12.53 -148.98 -1.87 -11.63 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.63 8.10 -2.39 -0.02 0.61 16 32 H 0.08 1.06 8.02 -2.39 -0.02 1.04 16 33 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.16 4.07 7.61 -2.91 -0.02 4.05 16 37 H 0.13 4.74 8.06 -2.91 -0.02 4.71 16 38 H 0.01 0.79 8.08 -2.39 -0.02 0.77 16 39 H 0.01 0.74 8.09 -2.39 -0.02 0.72 16 40 H 0.27 14.75 8.31 -92.70 -0.77 13.98 16 41 H 0.13 4.79 8.06 -2.91 -0.02 4.76 16 42 H 0.15 4.21 7.62 -2.91 -0.02 4.19 16 43 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.06 1.22 5.75 -2.39 -0.01 1.21 16 45 H 0.39 3.48 9.12 -74.06 -0.68 2.80 16 Total: -1.00 -72.05 380.03 -1.39 -73.44 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.32 Total: 16.50 kcal Atomic # 6 Polarization: -60.87 SS G_CDS: 3.80 Total: -57.08 kcal Atomic # 7 Polarization: -76.13 SS G_CDS: -1.32 Total: -77.45 kcal Atomic # 8 Polarization: -72.99 SS G_CDS: -5.89 Total: -78.87 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: 78.10 SS G_CDS: -0.33 Total: 77.77 kcal Total: -72.05 -1.39 -73.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885127263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.924 kcal (2) G-P(sol) polarization free energy of solvation -72.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds