Wall clock time and date at job start Tue Mar 31 2020 23:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 110.64077 * 2 1 4 4 C 1.55155 * 110.72326 * 236.66449 * 2 1 3 5 5 C 1.55120 * 101.48750 * 205.96901 * 4 2 1 6 6 N 1.47422 * 104.72351 * 37.29293 * 5 4 2 7 7 S 1.65607 * 125.64868 * 155.81947 * 6 5 4 8 8 O 1.42106 * 106.39782 * 313.00370 * 7 6 5 9 9 O 1.42097 * 106.40005 * 180.08650 * 7 6 5 10 10 C 1.76195 * 107.21843 * 66.54400 * 7 6 5 11 11 C 1.38231 * 120.00041 * 84.95020 * 10 7 6 12 12 C 1.38241 * 120.00274 * 179.97438 * 11 10 7 13 13 C 1.38231 * 119.99546 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99807 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47331 * 90.00003 * 14 13 12 16 16 H 1.07997 * 120.00063 * 359.71836 * 15 14 13 17 17 C 1.37878 * 120.00096 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99792 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00297 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47202 * 59.99639 * 19 17 15 21 21 H 1.48499 * 109.47686 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47279 * 299.99958 * 19 17 15 23 23 C 1.38236 * 120.00323 * 0.24716 * 13 12 11 24 24 C 1.38236 * 119.99831 * 359.47851 * 23 13 12 25 25 C 1.47025 * 108.70336 * 335.55206 * 6 5 4 26 26 H 1.08996 * 109.88444 * 241.71254 * 25 6 5 27 27 C 1.53004 * 109.88007 * 120.70478 * 25 6 5 28 28 O 1.42900 * 109.47206 * 67.25937 * 27 25 6 29 29 H 1.09001 * 109.47176 * 296.85705 * 1 2 3 30 30 H 1.09001 * 109.47116 * 56.85685 * 1 2 3 31 31 H 1.08998 * 109.46974 * 176.85862 * 1 2 3 32 32 H 1.09004 * 111.00134 * 324.20831 * 4 2 1 33 33 H 1.09001 * 111.00131 * 88.05765 * 4 2 1 34 34 H 1.09002 * 110.49675 * 278.44899 * 5 4 2 35 35 H 1.09003 * 110.34592 * 156.05839 * 5 4 2 36 36 H 1.08007 * 119.99967 * 359.97438 * 11 10 7 37 37 H 1.07994 * 120.00120 * 179.97438 * 12 11 10 38 38 H 1.08995 * 109.47061 * 329.99591 * 14 13 12 39 39 H 1.09008 * 109.46997 * 209.99924 * 14 13 12 40 40 H 0.97003 * 119.99697 * 180.02562 * 18 17 15 41 41 H 1.08004 * 120.00270 * 179.72867 * 23 13 12 42 42 H 1.08003 * 119.99747 * 180.26774 * 24 23 13 43 43 H 1.08999 * 109.46754 * 187.26225 * 27 25 6 44 44 H 1.09001 * 109.46931 * 307.25945 * 27 25 6 45 45 H 0.96700 * 113.99778 * 174.99253 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0790 -0.7975 -1.2124 5 6 3.4666 -1.2466 -0.6840 6 7 3.2445 -1.5494 0.7416 7 16 4.1634 -2.5711 1.6659 8 8 4.3370 -3.7565 0.9016 9 8 3.5897 -2.5615 2.9658 10 6 5.7594 -1.8408 1.8209 11 6 5.9973 -0.9027 2.8079 12 6 7.2496 -0.3301 2.9299 13 6 8.2638 -0.6954 2.0646 14 6 9.6289 -0.0708 2.1972 15 6 10.4714 -0.8987 3.1330 16 1 10.0581 -1.7857 3.5900 17 6 11.7678 -0.5203 3.4108 18 7 12.2692 0.5630 2.8587 19 14 12.8119 -1.5460 4.5713 20 1 12.9481 -2.9220 4.0294 21 1 14.1571 -0.9307 4.7019 22 1 12.1609 -1.6015 5.9049 23 6 8.0244 -1.6294 1.0741 24 6 6.7737 -2.2062 0.9557 25 6 2.0760 -0.7890 1.2086 26 1 2.3735 -0.1009 1.9998 27 6 1.0050 -1.7492 1.7301 28 8 1.4761 -2.3886 2.9180 29 1 -0.3633 0.4643 0.9168 30 1 -0.3633 0.5619 -0.8605 31 1 -0.3633 -1.0261 -0.0563 32 1 1.4452 -1.6560 -1.4346 33 1 2.1850 -0.1553 -2.0868 34 1 4.1947 -0.4427 -0.7922 35 1 3.8032 -2.1382 -1.2132 36 1 5.2047 -0.6169 3.4837 37 1 7.4353 0.4032 3.7007 38 1 9.5292 0.9390 2.5952 39 1 10.1065 -0.0300 1.2182 40 1 13.1814 0.8290 3.0538 41 1 8.8156 -1.9116 0.3952 42 1 6.5879 -2.9391 0.1845 43 1 0.0953 -1.1919 1.9537 44 1 0.7923 -2.5027 0.9717 45 1 0.8195 -2.9544 3.3469 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885127265.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:19 Heat of formation + Delta-G solvation = -120.706835 kcal Electronic energy + Delta-G solvation = -27935.551439 eV Core-core repulsion = 24043.867532 eV Total energy + Delta-G solvation = -3891.683907 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.32314 -40.25323 -38.18786 -37.03367 -36.66174 -35.61142 -33.66322 -33.32074 -31.99283 -31.16116 -29.25502 -27.57051 -25.60055 -25.46330 -23.75898 -23.11142 -22.45387 -20.65722 -19.78126 -19.04315 -18.62646 -18.45913 -18.03279 -17.13236 -16.86918 -16.51406 -16.10861 -15.96885 -15.56749 -15.18308 -14.91880 -14.64094 -14.50866 -14.47328 -14.26188 -14.01036 -13.91768 -13.57290 -13.41710 -13.40431 -13.09165 -12.96137 -12.80383 -12.67119 -12.66641 -12.49884 -12.28731 -12.06861 -11.99466 -11.84976 -11.70978 -11.55148 -11.42975 -11.28918 -10.69080 -10.66521 -10.05222 -10.00024 -9.89660 -8.28533 -6.41541 -0.59622 -0.06192 0.35986 1.37214 1.39044 1.47591 2.04180 2.34102 2.60871 2.83454 3.03849 3.22342 3.39695 3.70431 3.73494 3.87622 3.93981 4.06127 4.13007 4.29611 4.37459 4.43527 4.44190 4.48334 4.53106 4.62631 4.68642 4.78519 4.83490 4.87874 4.90642 4.95033 5.08288 5.14469 5.20837 5.21306 5.23503 5.25628 5.30319 5.36070 5.50752 5.58682 5.65216 5.82874 5.89723 6.08136 6.69671 7.05934 7.27431 8.81439 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022363 B = 0.002763 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.744273 B =10132.071787 C =10487.757358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 H 0.098 0.902 4 C -0.116 4.116 5 C 0.097 3.903 6 N -1.003 6.003 7 S 2.723 3.277 8 O -0.993 6.993 9 O -0.931 6.931 10 C -0.706 4.706 11 C -0.017 4.017 12 C -0.155 4.155 13 C -0.004 4.004 14 C 0.050 3.950 15 C -0.537 4.537 16 H 0.052 0.948 17 C 0.011 3.989 18 N -0.925 5.925 19 Si 0.964 3.036 20 H -0.269 1.269 21 H -0.277 1.277 22 H -0.269 1.269 23 C -0.153 4.153 24 C -0.026 4.026 25 C 0.147 3.853 26 H 0.074 0.926 27 C 0.035 3.965 28 O -0.562 6.562 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.150 0.850 37 H 0.130 0.870 38 H 0.014 0.986 39 H 0.014 0.986 40 H 0.268 0.732 41 H 0.131 0.869 42 H 0.151 0.849 43 H 0.089 0.911 44 H 0.051 0.949 45 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.685 -0.752 -8.434 28.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 H 0.116 0.884 4 C -0.155 4.155 5 C -0.028 4.028 6 N -0.843 5.843 7 S 2.815 3.185 8 O -0.983 6.983 9 O -0.921 6.921 10 C -0.791 4.791 11 C -0.036 4.036 12 C -0.174 4.174 13 C -0.004 4.004 14 C 0.013 3.987 15 C -0.574 4.574 16 H 0.071 0.929 17 C -0.189 4.189 18 N -0.564 5.564 19 Si 0.788 3.212 20 H -0.194 1.194 21 H -0.202 1.202 22 H -0.194 1.194 23 C -0.172 4.172 24 C -0.045 4.045 25 C 0.042 3.958 26 H 0.092 0.908 27 C -0.044 4.044 28 O -0.369 6.369 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.124 0.876 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.168 0.832 37 H 0.148 0.852 38 H 0.032 0.968 39 H 0.033 0.967 40 H 0.077 0.923 41 H 0.149 0.851 42 H 0.169 0.831 43 H 0.107 0.893 44 H 0.069 0.931 45 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -27.169 -1.168 -8.175 28.397 hybrid contribution 1.405 -0.088 0.718 1.581 sum -25.764 -1.255 -7.458 26.851 Atomic orbital electron populations 1.21908 0.92394 1.02863 1.03183 1.22234 0.97407 0.99189 0.91908 0.88355 1.22912 0.93871 1.00701 0.98018 1.22405 0.99977 1.01362 0.79010 1.58581 1.41003 1.63573 1.21160 1.00955 0.71953 0.72590 0.73050 1.93503 1.87053 1.44630 1.73132 1.93621 1.75054 1.85856 1.37591 1.31076 1.23734 1.16139 1.08176 1.20948 0.97158 0.91426 0.94042 1.21307 0.93096 1.02525 1.00424 1.20818 0.95730 0.92275 0.91580 1.18251 0.88385 0.95296 0.96762 1.21261 0.97837 1.10584 1.27758 0.92924 1.25863 0.99006 0.96291 0.97700 1.70048 1.16387 1.25207 1.44748 0.85514 0.77653 0.78846 0.79169 1.19393 1.20189 1.19392 1.21308 0.97631 0.98323 0.99954 1.21034 0.91806 0.95582 0.96058 1.21616 0.84149 0.92347 0.97719 0.90759 1.23108 0.97351 0.95982 0.87946 1.87091 1.42761 1.66261 1.40766 0.91498 0.90712 0.91754 0.89927 0.87634 0.90761 0.90356 0.83212 0.85181 0.96794 0.96729 0.92303 0.85085 0.83144 0.89284 0.93108 0.77049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 7.93 71.98 0.57 -0.34 16 2 C -0.09 -0.90 3.47 -9.61 -0.03 -0.94 16 3 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 4 C -0.12 -1.20 6.54 32.06 0.21 -0.99 16 5 C 0.10 1.64 7.26 86.93 0.63 2.27 16 6 N -1.00 -22.10 3.40 -483.88 -1.64 -23.75 16 7 S 2.72 81.89 5.59 -56.49 -0.32 81.58 16 8 O -0.99 -34.34 17.08 -128.00 -2.19 -36.52 16 9 O -0.93 -31.25 13.00 -118.21 -1.54 -32.79 16 10 C -0.71 -23.64 5.97 22.27 0.13 -23.51 16 11 C -0.02 -0.57 9.52 22.27 0.21 -0.36 16 12 C -0.15 -6.13 9.70 22.27 0.22 -5.92 16 13 C 0.00 -0.16 5.07 -19.87 -0.10 -0.27 16 14 C 0.05 2.63 5.10 29.10 0.15 2.78 16 15 C -0.54 -30.57 9.09 25.60 0.23 -30.34 16 16 H 0.05 2.99 7.74 -2.91 -0.02 2.96 16 17 C 0.01 0.60 5.46 84.65 0.46 1.06 16 18 N -0.92 -54.81 13.29 21.45 0.28 -54.53 16 19 Si 0.96 44.28 29.54 68.60 2.03 46.30 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 C -0.15 -6.06 9.70 22.27 0.22 -5.85 16 24 C -0.03 -0.89 9.53 22.27 0.21 -0.68 16 25 C 0.15 2.57 3.28 45.34 0.15 2.72 16 26 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 27 C 0.04 0.56 5.38 71.98 0.39 0.95 16 28 O -0.56 -12.59 9.41 -124.91 -1.18 -13.77 16 29 H 0.07 0.37 7.56 -2.39 -0.02 0.35 16 30 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.06 0.39 6.72 -2.39 -0.02 0.37 16 32 H 0.08 0.79 8.02 -2.38 -0.02 0.77 16 33 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.36 8.13 -2.39 -0.02 1.34 16 36 H 0.15 4.44 7.74 -2.91 -0.02 4.41 16 37 H 0.13 4.94 8.06 -2.91 -0.02 4.92 16 38 H 0.01 0.76 8.09 -2.39 -0.02 0.74 16 39 H 0.01 0.80 8.08 -2.38 -0.02 0.78 16 40 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 41 H 0.13 4.95 8.06 -2.91 -0.02 4.92 16 42 H 0.15 4.47 7.51 -2.91 -0.02 4.45 16 43 H 0.09 0.89 6.30 -2.39 -0.02 0.88 16 44 H 0.05 0.76 7.83 -2.39 -0.02 0.74 16 45 H 0.38 5.40 9.12 -74.06 -0.68 4.72 16 Total: -1.00 -75.59 373.61 -0.58 -76.17 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.32 Total: 16.73 kcal Atomic # 6 Polarization: -63.06 SS G_CDS: 3.65 Total: -59.41 kcal Atomic # 7 Polarization: -76.92 SS G_CDS: -1.36 Total: -78.28 kcal Atomic # 8 Polarization: -78.18 SS G_CDS: -4.90 Total: -83.08 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: 81.89 SS G_CDS: -0.32 Total: 81.58 kcal Total: -75.59 -0.58 -76.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885127265.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.539 kcal (2) G-P(sol) polarization free energy of solvation -75.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds