Wall clock time and date at job start Tue Mar 31 2020 23:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.64218 * 2 1 4 4 C 1.55156 * 110.72653 * 123.14287 * 2 1 3 5 5 C 1.54900 * 101.58629 * 153.86701 * 4 2 1 6 6 N 1.47426 * 104.82994 * 322.98975 * 5 4 2 7 7 S 1.65599 * 125.64614 * 204.09177 * 6 5 4 8 8 O 1.42094 * 106.40499 * 330.40480 * 7 6 5 9 9 O 1.42103 * 106.40312 * 197.48073 * 7 6 5 10 10 C 1.76201 * 107.21773 * 83.94441 * 7 6 5 11 11 C 1.38237 * 119.99812 * 89.99898 * 10 7 6 12 12 C 1.38235 * 120.00077 * 179.97438 * 11 10 7 13 13 C 1.38241 * 119.99825 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99997 * 179.97438 * 13 12 11 15 15 C 1.50694 * 109.47000 * 90.00336 * 14 13 12 16 16 H 1.08003 * 120.00266 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00256 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99666 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00394 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.47098 * 59.99727 * 19 17 15 21 21 H 1.48500 * 109.47106 * 300.00100 * 19 17 15 22 22 H 1.48500 * 109.47277 * 179.97438 * 19 17 15 23 23 C 1.38228 * 119.99919 * 0.25823 * 13 12 11 24 24 C 1.38233 * 120.00379 * 270.01919 * 10 7 6 25 25 C 1.47017 * 108.70640 * 24.35761 * 6 5 4 26 26 H 1.08998 * 109.88825 * 239.29878 * 25 6 5 27 27 C 1.52999 * 109.88521 * 118.12709 * 25 6 5 28 28 O 1.42897 * 109.47324 * 296.07300 * 27 25 6 29 29 H 1.09000 * 109.46828 * 298.31031 * 1 2 3 30 30 H 1.08998 * 109.47591 * 58.31639 * 1 2 3 31 31 H 1.09005 * 109.46805 * 178.31302 * 1 2 3 32 32 H 1.09003 * 110.99853 * 35.78685 * 4 2 1 33 33 H 1.09003 * 111.03307 * 271.95643 * 4 2 1 34 34 H 1.08997 * 110.36741 * 204.15409 * 5 4 2 35 35 H 1.08993 * 110.46177 * 81.87524 * 5 4 2 36 36 H 1.08001 * 120.00349 * 0.02562 * 11 10 7 37 37 H 1.07994 * 120.00360 * 180.02562 * 12 11 10 38 38 H 1.08999 * 109.46864 * 330.00346 * 14 13 12 39 39 H 1.09000 * 109.46811 * 210.00607 * 14 13 12 40 40 H 0.97000 * 120.00010 * 0.02562 * 18 17 15 41 41 H 1.07998 * 120.00154 * 179.72321 * 23 13 12 42 42 H 1.07998 * 119.99824 * 0.02562 * 24 10 7 43 43 H 1.08999 * 109.46903 * 56.07190 * 27 25 6 44 44 H 1.09001 * 109.47112 * 176.06859 * 27 25 6 45 45 H 0.96702 * 114.00373 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0791 -0.7934 1.2151 5 6 3.4633 -1.2485 0.6896 6 7 3.2445 -1.5519 -0.7364 7 16 4.1634 -2.5767 -1.6571 8 8 5.4753 -2.5380 -1.1127 9 8 3.8751 -2.2652 -3.0133 10 6 3.5586 -4.2087 -1.3822 11 6 2.5549 -4.7182 -2.1847 12 6 2.0808 -5.9987 -1.9694 13 6 2.6100 -6.7696 -0.9512 14 6 2.0927 -8.1654 -0.7160 15 6 2.8968 -9.1433 -1.5333 16 1 3.7017 -8.7895 -2.1606 17 6 2.6044 -10.4898 -1.4811 18 7 1.6240 -10.9206 -0.7176 19 14 3.6016 -11.7021 -2.4936 20 1 5.0286 -11.6289 -2.0890 21 1 3.4776 -11.3637 -3.9342 22 1 3.0918 -13.0775 -2.2620 23 6 3.6095 -6.2580 -0.1450 24 6 4.0874 -4.9794 -0.3638 25 6 2.0793 -0.7890 -1.2074 26 1 1.3155 -1.4713 -1.5804 27 6 2.5033 0.1777 -2.3149 28 8 3.4166 1.1398 -1.7835 29 1 -0.3633 0.4874 0.9048 30 1 -0.3634 0.5397 -0.8745 31 1 -0.3633 -1.0273 -0.0303 32 1 1.4452 -1.6511 1.4402 33 1 2.1850 -0.1488 2.0876 34 1 3.7961 -2.1404 1.2204 35 1 4.1946 -0.4477 0.7992 36 1 2.1417 -4.1161 -2.9804 37 1 1.2970 -6.3969 -2.5966 38 1 1.0452 -8.2193 -1.0122 39 1 2.1846 -8.4135 0.3414 40 1 1.1065 -10.2911 -0.1915 41 1 4.0199 -6.8586 0.6533 42 1 4.8711 -4.5811 0.2636 43 1 2.9878 -0.3788 -3.1171 44 1 1.6242 0.6891 -2.7070 45 1 3.7283 1.7862 -2.4317 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885127267.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:23 Heat of formation + Delta-G solvation = -111.792369 kcal Electronic energy + Delta-G solvation = -27917.775153 eV Core-core repulsion = 24026.477806 eV Total energy + Delta-G solvation = -3891.297347 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.52218 -38.89809 -37.23521 -36.32587 -35.78118 -34.01746 -32.79187 -31.53220 -30.69215 -30.61291 -27.49698 -27.07690 -24.19782 -23.55729 -22.44279 -22.22569 -21.11340 -20.55725 -18.98002 -17.96760 -17.68663 -17.11152 -16.89996 -16.33224 -15.59683 -15.03418 -14.94165 -14.61784 -14.16850 -14.08600 -13.89684 -13.75944 -13.64630 -13.29344 -13.23732 -13.20667 -12.96034 -12.50457 -12.31545 -12.16792 -12.01262 -11.96220 -11.80206 -11.64973 -11.55831 -11.15458 -10.94633 -10.90743 -10.87726 -10.78825 -10.57564 -10.25830 -10.06411 -10.00099 -9.28334 -9.13954 -8.67182 -8.50627 -8.31305 -6.52772 -4.25538 0.39994 1.25451 1.70750 2.98261 3.37986 3.38786 3.57855 3.74635 3.88906 4.01148 4.20307 4.28528 4.44938 4.53314 4.60078 4.89768 5.04493 5.07065 5.09282 5.15881 5.17533 5.24641 5.27645 5.37571 5.42095 5.50794 5.59108 5.65054 5.72303 5.73663 5.78264 5.80940 5.84642 6.00820 6.14916 6.17811 6.22886 6.26653 6.44725 6.71418 6.73596 6.95612 7.29739 7.35932 7.39758 7.91749 8.27298 8.67894 9.45591 10.86681 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020260 B = 0.002850 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.729453 B = 9821.386780 C =10275.046758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.096 0.904 4 C -0.127 4.127 5 C 0.126 3.874 6 N -1.002 6.002 7 S 2.712 3.288 8 O -0.959 6.959 9 O -0.962 6.962 10 C -0.704 4.704 11 C -0.022 4.022 12 C -0.145 4.145 13 C 0.031 3.969 14 C 0.027 3.973 15 C -0.598 4.598 16 H 0.053 0.947 17 C 0.020 3.980 18 N -0.906 5.906 19 Si 1.071 2.929 20 H -0.286 1.286 21 H -0.286 1.286 22 H -0.281 1.281 23 C -0.145 4.145 24 C -0.023 4.023 25 C 0.159 3.841 26 H 0.088 0.912 27 C 0.041 3.959 28 O -0.566 6.566 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.269 0.731 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.079 0.921 44 H 0.055 0.945 45 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.681 24.813 1.799 24.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.115 0.885 4 C -0.166 4.166 5 C 0.001 3.999 6 N -0.839 5.839 7 S 2.807 3.193 8 O -0.949 6.949 9 O -0.953 6.953 10 C -0.793 4.793 11 C -0.041 4.041 12 C -0.164 4.164 13 C 0.030 3.970 14 C -0.009 4.009 15 C -0.636 4.636 16 H 0.071 0.929 17 C -0.184 4.184 18 N -0.542 5.542 19 Si 0.898 3.102 20 H -0.212 1.212 21 H -0.212 1.212 22 H -0.206 1.206 23 C -0.164 4.164 24 C -0.042 4.042 25 C 0.052 3.948 26 H 0.106 0.894 27 C -0.038 4.038 28 O -0.371 6.371 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.080 0.920 41 H 0.146 0.854 42 H 0.148 0.852 43 H 0.097 0.903 44 H 0.073 0.927 45 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -0.872 23.040 1.390 23.098 hybrid contribution -0.515 1.261 0.049 1.363 sum -1.387 24.301 1.439 24.383 Atomic orbital electron populations 1.21813 0.94124 1.02279 1.02058 1.22200 0.95563 1.00331 0.93244 0.88529 1.22867 0.95897 1.00235 0.97562 1.21934 0.97769 1.00822 0.79378 1.58581 1.45083 1.58114 1.22135 1.01198 0.72809 0.72706 0.72567 1.93552 1.34644 1.86965 1.79752 1.93490 1.85192 1.83891 1.32724 1.30487 1.14431 1.24332 1.10073 1.20746 0.92277 0.95829 0.95257 1.21211 1.02098 0.93894 0.99211 1.20860 0.90319 0.95919 0.89880 1.18645 0.96860 0.87524 0.97920 1.21834 1.19272 0.93036 1.29432 0.92905 1.25926 0.97353 0.97566 0.97584 1.70806 1.19006 1.38628 1.25740 0.83503 0.75305 0.75812 0.75531 1.21228 1.21234 1.20570 1.21213 0.98416 0.95252 1.01491 1.20772 0.95688 0.94101 0.93641 1.21508 0.86883 0.91705 0.94657 0.89376 1.22975 0.93287 0.91066 0.96474 1.86463 1.64827 1.45185 1.40660 0.92057 0.92451 0.92239 0.90489 0.90036 0.90876 0.90847 0.85267 0.85415 0.95669 0.95657 0.92034 0.85391 0.85246 0.90330 0.92658 0.77642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.15 37.16 0.34 -0.60 16 2 C -0.09 -0.75 2.96 -88.78 -0.26 -1.01 16 3 H 0.10 0.80 7.00 -51.93 -0.36 0.44 16 4 C -0.13 -1.00 6.54 -24.59 -0.16 -1.16 16 5 C 0.13 1.27 7.04 -2.53 -0.02 1.25 16 6 N -1.00 -11.85 3.34 -104.42 -0.35 -12.20 16 7 S 2.71 40.56 5.86 -107.50 -0.63 39.93 16 8 O -0.96 -16.66 16.95 -57.17 -0.97 -17.63 16 9 O -0.96 -15.50 14.45 -57.17 -0.83 -16.33 16 10 C -0.70 -11.55 5.97 -39.58 -0.24 -11.79 16 11 C -0.02 -0.36 9.52 -39.58 -0.38 -0.74 16 12 C -0.15 -2.75 9.70 -39.58 -0.38 -3.13 16 13 C 0.03 0.65 5.07 -104.62 -0.53 0.12 16 14 C 0.03 0.67 4.42 -29.04 -0.13 0.54 16 15 C -0.60 -16.54 9.09 -34.44 -0.31 -16.85 16 16 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 17 C 0.02 0.56 5.46 -17.82 -0.10 0.47 16 18 N -0.91 -26.76 13.65 55.43 0.76 -26.01 16 19 Si 1.07 24.82 29.90 -169.99 -5.08 19.74 16 20 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 C -0.14 -2.76 9.70 -39.59 -0.38 -3.14 16 24 C -0.02 -0.38 9.52 -39.58 -0.38 -0.76 16 25 C 0.16 1.57 3.01 -66.95 -0.20 1.37 16 26 H 0.09 0.80 7.79 -51.93 -0.40 0.40 16 27 C 0.04 0.39 6.69 37.16 0.25 0.64 16 28 O -0.57 -5.27 12.46 -35.23 -0.44 -5.71 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 32 H 0.08 0.61 8.05 -51.93 -0.42 0.19 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.13 1.83 7.62 -52.49 -0.40 1.43 16 37 H 0.13 2.29 8.06 -52.49 -0.42 1.87 16 38 H 0.03 0.63 7.95 -51.93 -0.41 0.22 16 39 H 0.03 0.64 7.95 -51.93 -0.41 0.22 16 40 H 0.27 7.83 7.22 -40.82 -0.29 7.54 16 41 H 0.13 2.31 8.06 -52.49 -0.42 1.89 16 42 H 0.13 1.90 7.62 -52.49 -0.40 1.50 16 43 H 0.08 0.89 5.69 -51.93 -0.30 0.59 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.38 1.98 9.12 45.56 0.42 2.40 16 LS Contribution 378.60 15.07 5.71 5.71 Total: -1.00 -34.35 378.60 -10.71 -45.06 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -5.99 Total: 2.24 kcal Atomic # 6 Polarization: -31.91 SS G_CDS: -2.88 Total: -34.79 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.41 Total: -38.21 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -2.23 Total: -39.67 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -5.08 Total: 19.74 kcal Atomic # 16 Polarization: 40.56 SS G_CDS: -0.63 Total: 39.93 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.35 -10.71 -45.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885127267.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.736 kcal (2) G-P(sol) polarization free energy of solvation -34.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds