Wall clock time and date at job start Tue Mar 31 2020 23:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.64218 * 2 1 4 4 C 1.55156 * 110.72653 * 123.14287 * 2 1 3 5 5 C 1.54900 * 101.58629 * 153.86701 * 4 2 1 6 6 N 1.47426 * 104.82994 * 322.98975 * 5 4 2 7 7 S 1.65599 * 125.64614 * 204.09177 * 6 5 4 8 8 O 1.42094 * 106.40499 * 330.40480 * 7 6 5 9 9 O 1.42103 * 106.40312 * 197.48073 * 7 6 5 10 10 C 1.76201 * 107.21773 * 83.94441 * 7 6 5 11 11 C 1.38237 * 119.99812 * 89.99898 * 10 7 6 12 12 C 1.38235 * 120.00077 * 179.97438 * 11 10 7 13 13 C 1.38241 * 119.99825 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99997 * 179.97438 * 13 12 11 15 15 C 1.50694 * 109.47000 * 90.00336 * 14 13 12 16 16 H 1.08003 * 120.00266 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00256 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99666 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00394 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.47098 * 59.99727 * 19 17 15 21 21 H 1.48500 * 109.47106 * 300.00100 * 19 17 15 22 22 H 1.48500 * 109.47277 * 179.97438 * 19 17 15 23 23 C 1.38228 * 119.99919 * 0.25823 * 13 12 11 24 24 C 1.38233 * 120.00379 * 270.01919 * 10 7 6 25 25 C 1.47017 * 108.70640 * 24.35761 * 6 5 4 26 26 H 1.08998 * 109.88825 * 239.29878 * 25 6 5 27 27 C 1.52999 * 109.88521 * 118.12709 * 25 6 5 28 28 O 1.42897 * 109.47324 * 296.07300 * 27 25 6 29 29 H 1.09000 * 109.46828 * 298.31031 * 1 2 3 30 30 H 1.08998 * 109.47591 * 58.31639 * 1 2 3 31 31 H 1.09005 * 109.46805 * 178.31302 * 1 2 3 32 32 H 1.09003 * 110.99853 * 35.78685 * 4 2 1 33 33 H 1.09003 * 111.03307 * 271.95643 * 4 2 1 34 34 H 1.08997 * 110.36741 * 204.15409 * 5 4 2 35 35 H 1.08993 * 110.46177 * 81.87524 * 5 4 2 36 36 H 1.08001 * 120.00349 * 0.02562 * 11 10 7 37 37 H 1.07994 * 120.00360 * 180.02562 * 12 11 10 38 38 H 1.08999 * 109.46864 * 330.00346 * 14 13 12 39 39 H 1.09000 * 109.46811 * 210.00607 * 14 13 12 40 40 H 0.97000 * 120.00010 * 0.02562 * 18 17 15 41 41 H 1.07998 * 120.00154 * 179.72321 * 23 13 12 42 42 H 1.07998 * 119.99824 * 0.02562 * 24 10 7 43 43 H 1.08999 * 109.46903 * 56.07190 * 27 25 6 44 44 H 1.09001 * 109.47112 * 176.06859 * 27 25 6 45 45 H 0.96702 * 114.00373 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0791 -0.7934 1.2151 5 6 3.4633 -1.2485 0.6896 6 7 3.2445 -1.5519 -0.7364 7 16 4.1634 -2.5767 -1.6571 8 8 5.4753 -2.5380 -1.1127 9 8 3.8751 -2.2652 -3.0133 10 6 3.5586 -4.2087 -1.3822 11 6 2.5549 -4.7182 -2.1847 12 6 2.0808 -5.9987 -1.9694 13 6 2.6100 -6.7696 -0.9512 14 6 2.0927 -8.1654 -0.7160 15 6 2.8968 -9.1433 -1.5333 16 1 3.7017 -8.7895 -2.1606 17 6 2.6044 -10.4898 -1.4811 18 7 1.6240 -10.9206 -0.7176 19 14 3.6016 -11.7021 -2.4936 20 1 5.0286 -11.6289 -2.0890 21 1 3.4776 -11.3637 -3.9342 22 1 3.0918 -13.0775 -2.2620 23 6 3.6095 -6.2580 -0.1450 24 6 4.0874 -4.9794 -0.3638 25 6 2.0793 -0.7890 -1.2074 26 1 1.3155 -1.4713 -1.5804 27 6 2.5033 0.1777 -2.3149 28 8 3.4166 1.1398 -1.7835 29 1 -0.3633 0.4874 0.9048 30 1 -0.3634 0.5397 -0.8745 31 1 -0.3633 -1.0273 -0.0303 32 1 1.4452 -1.6511 1.4402 33 1 2.1850 -0.1488 2.0876 34 1 3.7961 -2.1404 1.2204 35 1 4.1946 -0.4477 0.7992 36 1 2.1417 -4.1161 -2.9804 37 1 1.2970 -6.3969 -2.5966 38 1 1.0452 -8.2193 -1.0122 39 1 2.1846 -8.4135 0.3414 40 1 1.1065 -10.2911 -0.1915 41 1 4.0199 -6.8586 0.6533 42 1 4.8711 -4.5811 0.2636 43 1 2.9878 -0.3788 -3.1171 44 1 1.6242 0.6891 -2.7070 45 1 3.7283 1.7862 -2.4317 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885127267.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:22 Heat of formation + Delta-G solvation = -135.692172 kcal Electronic energy + Delta-G solvation = -27918.811526 eV Core-core repulsion = 24026.477806 eV Total energy + Delta-G solvation = -3892.333720 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.37339 -40.25093 -38.47732 -37.12951 -36.94612 -35.99127 -33.51684 -33.28749 -32.09259 -31.35241 -28.94890 -28.14088 -25.53528 -24.87516 -23.85546 -23.08094 -22.66976 -21.25442 -20.12049 -19.15785 -18.89496 -18.69670 -17.95896 -17.25754 -16.78383 -16.51597 -15.98016 -15.72383 -15.67593 -15.50651 -15.11187 -14.89877 -14.71216 -14.58077 -14.38436 -13.96168 -13.82530 -13.69363 -13.58991 -13.57684 -13.36640 -13.25598 -13.05525 -12.83088 -12.57811 -12.55917 -12.37198 -12.16754 -11.98497 -11.76811 -11.72406 -11.54525 -11.40488 -11.16766 -10.74416 -10.64574 -10.12008 -10.08850 -9.94665 -8.76096 -6.50295 -0.79025 -0.18370 0.27068 1.50012 1.56729 1.77192 1.88122 2.42840 2.53583 2.68899 3.03569 3.06396 3.34732 3.56230 3.70705 3.83963 3.86076 3.93110 3.97967 4.19257 4.31298 4.33777 4.38675 4.45165 4.54905 4.63151 4.66866 4.71992 4.73391 4.83464 4.84561 4.93533 4.97796 5.02456 5.04929 5.13309 5.17263 5.18108 5.22581 5.31586 5.47018 5.59025 5.67697 5.75187 5.86075 6.05629 6.45728 6.90853 7.28988 8.63279 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020260 B = 0.002850 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.729453 B = 9821.386780 C =10275.046758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 H 0.096 0.904 4 C -0.122 4.122 5 C 0.114 3.886 6 N -0.998 5.998 7 S 2.732 3.268 8 O -0.982 6.982 9 O -0.973 6.973 10 C -0.701 4.701 11 C -0.016 4.016 12 C -0.154 4.154 13 C 0.000 4.000 14 C 0.033 3.967 15 C -0.610 4.610 16 H 0.045 0.955 17 C -0.029 4.029 18 N -0.930 5.930 19 Si 1.116 2.884 20 H -0.271 1.271 21 H -0.270 1.270 22 H -0.279 1.279 23 C -0.154 4.154 24 C -0.020 4.020 25 C 0.144 3.856 26 H 0.096 0.904 27 C 0.041 3.959 28 O -0.580 6.580 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.158 0.842 37 H 0.131 0.869 38 H 0.011 0.989 39 H 0.010 0.990 40 H 0.259 0.741 41 H 0.129 0.871 42 H 0.153 0.847 43 H 0.058 0.942 44 H 0.081 0.919 45 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.517 26.994 1.436 27.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 H 0.115 0.885 4 C -0.160 4.160 5 C -0.010 4.010 6 N -0.837 5.837 7 S 2.825 3.175 8 O -0.973 6.973 9 O -0.963 6.963 10 C -0.788 4.788 11 C -0.035 4.035 12 C -0.172 4.172 13 C -0.001 4.001 14 C -0.003 4.003 15 C -0.648 4.648 16 H 0.063 0.937 17 C -0.227 4.227 18 N -0.567 5.567 19 Si 0.936 3.064 20 H -0.196 1.196 21 H -0.195 1.195 22 H -0.204 1.204 23 C -0.173 4.173 24 C -0.039 4.039 25 C 0.039 3.961 26 H 0.114 0.886 27 C -0.039 4.039 28 O -0.387 6.387 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.175 0.825 37 H 0.149 0.851 38 H 0.029 0.971 39 H 0.028 0.972 40 H 0.068 0.932 41 H 0.147 0.853 42 H 0.171 0.829 43 H 0.076 0.924 44 H 0.099 0.901 45 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -0.710 25.230 1.023 25.260 hybrid contribution -0.568 0.787 0.185 0.988 sum -1.279 26.016 1.208 26.076 Atomic orbital electron populations 1.21803 0.92860 1.02321 1.03022 1.22170 0.96434 0.99822 0.92125 0.88539 1.22886 0.94362 1.00596 0.98199 1.22187 0.99321 1.01128 0.78397 1.58360 1.45489 1.57037 1.22858 1.00572 0.72427 0.72178 0.72327 1.93521 1.36403 1.87148 1.80214 1.93479 1.85328 1.83754 1.33782 1.30937 1.13397 1.25425 1.09046 1.21013 0.91888 0.94981 0.95638 1.21292 1.02392 0.94758 0.98797 1.20627 0.92415 0.94757 0.92260 1.18424 0.95839 0.89676 0.96407 1.22158 1.19195 0.94043 1.29409 0.93676 1.27365 0.97569 0.99873 0.97900 1.70920 1.20223 1.38475 1.27049 0.82947 0.74668 0.73755 0.74999 1.19617 1.19518 1.20413 1.21274 0.98212 0.96315 1.01459 1.21009 0.95834 0.93125 0.93961 1.21870 0.86326 0.92082 0.95861 0.88636 1.22946 0.94110 0.91172 0.95624 1.86420 1.65007 1.45586 1.41734 0.91034 0.91628 0.92636 0.90445 0.88098 0.90600 0.90771 0.82485 0.85122 0.97079 0.97170 0.93154 0.85264 0.82924 0.92391 0.90085 0.75762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.15 71.98 0.66 -0.77 16 2 C -0.09 -1.12 2.96 -9.60 -0.03 -1.15 16 3 H 0.10 1.31 7.00 -2.39 -0.02 1.30 16 4 C -0.12 -1.60 6.54 31.98 0.21 -1.39 16 5 C 0.11 2.07 7.04 86.85 0.61 2.68 16 6 N -1.00 -21.65 3.34 -484.28 -1.62 -23.27 16 7 S 2.73 77.26 5.86 -56.49 -0.33 76.93 16 8 O -0.98 -32.76 16.95 -128.00 -2.17 -34.93 16 9 O -0.97 -29.73 14.45 -128.00 -1.85 -31.58 16 10 C -0.70 -21.99 5.97 22.27 0.13 -21.86 16 11 C -0.02 -0.52 9.52 22.27 0.21 -0.30 16 12 C -0.15 -5.81 9.70 22.27 0.22 -5.59 16 13 C 0.00 -0.01 5.07 -19.87 -0.10 -0.11 16 14 C 0.03 1.71 4.42 29.10 0.13 1.84 16 15 C -0.61 -34.57 9.09 25.60 0.23 -34.34 16 16 H 0.04 2.57 7.74 -2.91 -0.02 2.54 16 17 C -0.03 -1.63 5.46 84.65 0.46 -1.16 16 18 N -0.93 -56.21 13.65 21.45 0.29 -55.92 16 19 Si 1.12 49.90 29.90 68.60 2.05 51.95 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 21 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 23 C -0.15 -5.89 9.70 22.27 0.22 -5.68 16 24 C -0.02 -0.66 9.52 22.27 0.21 -0.45 16 25 C 0.14 2.51 3.01 45.35 0.14 2.65 16 26 H 0.10 1.51 7.79 -2.39 -0.02 1.49 16 27 C 0.04 0.68 6.69 71.98 0.48 1.16 16 28 O -0.58 -9.51 12.46 -148.98 -1.86 -11.37 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.05 0.61 8.10 -2.38 -0.02 0.59 16 32 H 0.08 1.04 8.05 -2.39 -0.02 1.02 16 33 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 36 H 0.16 4.09 7.62 -2.91 -0.02 4.07 16 37 H 0.13 4.73 8.06 -2.91 -0.02 4.71 16 38 H 0.01 0.58 7.95 -2.39 -0.02 0.56 16 39 H 0.01 0.54 7.95 -2.39 -0.02 0.52 16 40 H 0.26 15.67 7.22 -92.71 -0.67 15.00 16 41 H 0.13 4.78 8.06 -2.91 -0.02 4.75 16 42 H 0.15 4.24 7.62 -2.91 -0.02 4.21 16 43 H 0.06 1.22 5.69 -2.39 -0.01 1.20 16 44 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.39 3.32 9.12 -74.06 -0.68 2.64 16 Total: -1.00 -74.09 378.60 -1.28 -75.37 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.42 Total: 17.30 kcal Atomic # 6 Polarization: -68.27 SS G_CDS: 3.78 Total: -64.48 kcal Atomic # 7 Polarization: -77.86 SS G_CDS: -1.32 Total: -79.19 kcal Atomic # 8 Polarization: -72.00 SS G_CDS: -5.88 Total: -77.87 kcal Atomic # 14 Polarization: 49.90 SS G_CDS: 2.05 Total: 51.95 kcal Atomic # 16 Polarization: 77.26 SS G_CDS: -0.33 Total: 76.93 kcal Total: -74.09 -1.28 -75.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885127267.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.326 kcal (2) G-P(sol) polarization free energy of solvation -74.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds