Wall clock time and date at job start Tue Mar 31 2020 23:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 110.64193 * 2 1 4 4 C 1.55162 * 110.71668 * 123.33288 * 2 1 3 5 5 C 1.55127 * 101.48538 * 82.69771 * 4 2 1 6 6 N 1.47426 * 104.72495 * 37.29144 * 5 4 2 7 7 S 1.65597 * 125.65045 * 155.81399 * 6 5 4 8 8 O 1.42101 * 106.40415 * 162.08153 * 7 6 5 9 9 O 1.42100 * 106.40078 * 29.16263 * 7 6 5 10 10 C 1.76198 * 107.21844 * 275.62411 * 7 6 5 11 11 C 1.38240 * 119.99942 * 90.00102 * 10 7 6 12 12 C 1.38234 * 119.99845 * 179.97438 * 11 10 7 13 13 C 1.38237 * 120.00275 * 0.02562 * 12 11 10 14 14 C 1.50700 * 120.00154 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.46814 * 90.00298 * 14 13 12 16 16 H 1.07996 * 120.00216 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99793 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00520 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00161 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46817 * 269.99924 * 19 17 15 21 21 H 1.48501 * 109.47114 * 29.99783 * 19 17 15 22 22 H 1.48497 * 109.47323 * 150.00194 * 19 17 15 23 23 C 1.38237 * 119.99645 * 0.25274 * 13 12 11 24 24 C 1.38232 * 120.00121 * 359.47312 * 23 13 12 25 25 C 1.47024 * 108.69926 * 335.55410 * 6 5 4 26 26 H 1.09006 * 109.87738 * 120.85591 * 25 6 5 27 27 C 1.53001 * 109.88205 * 241.86282 * 25 6 5 28 28 O 1.42894 * 109.47172 * 177.68762 * 27 25 6 29 29 H 1.09005 * 109.47193 * 183.14259 * 1 2 3 30 30 H 1.08997 * 109.47202 * 303.14673 * 1 2 3 31 31 H 1.09005 * 109.46732 * 63.14481 * 1 2 3 32 32 H 1.09002 * 111.00153 * 200.93823 * 4 2 1 33 33 H 1.08996 * 111.00282 * 324.78755 * 4 2 1 34 34 H 1.08998 * 110.49873 * 278.45281 * 5 4 2 35 35 H 1.09005 * 110.34238 * 156.05809 * 5 4 2 36 36 H 1.07998 * 120.00018 * 359.97196 * 11 10 7 37 37 H 1.07998 * 120.00303 * 179.97438 * 12 11 10 38 38 H 1.09003 * 109.47051 * 329.99979 * 14 13 12 39 39 H 1.09005 * 109.46860 * 209.99991 * 14 13 12 40 40 H 0.97002 * 119.99319 * 359.97438 * 18 17 15 41 41 H 1.08000 * 119.99963 * 179.72959 * 23 13 12 42 42 H 1.07996 * 120.00327 * 180.30189 * 24 23 13 43 43 H 1.08997 * 109.46983 * 297.69095 * 27 25 6 44 44 H 1.09003 * 109.46583 * 57.68982 * 27 25 6 45 45 H 0.96695 * 114.00236 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0789 -0.7975 1.2125 5 6 2.0075 -2.2536 0.6825 6 7 2.3716 -2.1520 -0.7425 7 16 3.0024 -3.3725 -1.6670 8 8 2.8076 -2.9914 -3.0220 9 8 2.5049 -4.5868 -1.1219 10 6 4.7438 -3.3833 -1.3986 11 6 5.2819 -4.1518 -0.3833 12 6 6.6482 -4.1608 -0.1731 13 6 7.4763 -3.4008 -0.9779 14 6 8.9657 -3.4101 -0.7483 15 6 9.5936 -4.5067 -1.5694 16 1 8.9759 -5.1345 -2.1945 17 6 10.9565 -4.7094 -1.5217 18 7 11.7087 -3.9453 -0.7601 19 14 11.7348 -6.0692 -2.5388 20 1 11.7710 -7.3230 -1.7439 21 1 10.9337 -6.2867 -3.7702 22 1 13.1185 -5.6790 -2.9109 23 6 6.9376 -2.6279 -1.9895 24 6 5.5719 -2.6233 -2.2033 25 6 2.0760 -0.7892 -1.2085 26 1 2.9864 -0.3191 -1.5805 27 6 1.0237 -0.8355 -2.3182 28 8 0.7037 0.4957 -2.7271 29 1 -0.3634 -1.0262 0.0563 30 1 -0.3633 0.5619 0.8604 31 1 -0.3633 0.4643 -0.9169 32 1 3.1061 -0.5097 1.4368 33 1 1.4395 -0.6697 2.0859 34 1 0.9974 -2.6493 0.7885 35 1 2.7208 -2.8852 1.2122 36 1 4.6349 -4.7452 0.2457 37 1 7.0686 -4.7608 0.6203 38 1 9.1694 -3.5849 0.3081 39 1 9.3850 -2.4486 -1.0450 40 1 11.3046 -3.2389 -0.2322 41 1 7.5842 -2.0307 -2.6154 42 1 5.1515 -2.0233 -2.9967 43 1 1.4170 -1.3923 -3.1688 44 1 0.1249 -1.3273 -1.9462 45 1 0.0409 0.5429 -3.4295 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885127313.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:27 Heat of formation + Delta-G solvation = -106.979422 kcal Electronic energy + Delta-G solvation = -27865.861887 eV Core-core repulsion = 23974.773246 eV Total energy + Delta-G solvation = -3891.088642 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.79275 -38.91403 -37.31893 -36.53679 -35.88054 -34.02644 -32.56857 -31.54703 -30.69761 -30.60155 -27.18282 -27.03290 -25.07155 -23.56779 -22.46160 -22.27926 -21.13055 -20.16163 -18.99508 -18.00476 -17.72979 -17.31018 -16.93200 -16.02486 -15.70785 -15.60528 -14.99394 -14.66381 -14.56682 -14.09311 -13.88570 -13.77351 -13.53524 -13.31912 -13.20873 -13.04630 -12.71627 -12.57749 -12.35253 -12.31552 -12.07345 -11.94474 -11.81842 -11.66204 -11.65357 -11.18127 -10.99075 -10.93170 -10.88200 -10.69507 -10.58067 -10.25151 -10.06900 -10.04380 -9.33056 -9.25714 -8.68475 -8.50684 -8.32461 -6.53125 -4.25919 0.31049 1.23019 1.69627 2.84427 3.36864 3.39965 3.56203 3.62435 3.88743 4.00941 4.09877 4.26875 4.44381 4.49427 4.61294 4.90048 4.94699 4.99993 5.07759 5.14427 5.19776 5.24045 5.26882 5.31353 5.44404 5.56691 5.58545 5.61907 5.69155 5.73272 5.78764 5.79778 5.83578 5.95979 6.12777 6.13760 6.18578 6.21874 6.42304 6.70291 6.72775 6.95284 7.28398 7.33196 7.35169 7.91292 8.27454 8.67749 9.45300 10.86422 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021374 B = 0.002734 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.677021 B =10237.120522 C =10374.220799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.086 4.086 3 H 0.089 0.911 4 C -0.130 4.130 5 C 0.121 3.879 6 N -1.005 6.005 7 S 2.707 3.293 8 O -0.958 6.958 9 O -0.958 6.958 10 C -0.703 4.703 11 C -0.023 4.023 12 C -0.145 4.145 13 C 0.032 3.968 14 C 0.027 3.973 15 C -0.597 4.597 16 H 0.053 0.947 17 C 0.020 3.980 18 N -0.907 5.907 19 Si 1.074 2.926 20 H -0.286 1.286 21 H -0.287 1.287 22 H -0.282 1.282 23 C -0.145 4.145 24 C -0.020 4.020 25 C 0.158 3.842 26 H 0.083 0.917 27 C 0.044 3.956 28 O -0.565 6.565 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.025 0.975 39 H 0.026 0.974 40 H 0.270 0.730 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.076 0.924 44 H 0.052 0.948 45 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.707 8.616 2.463 25.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.106 4.106 3 H 0.108 0.892 4 C -0.169 4.169 5 C -0.003 4.003 6 N -0.844 5.844 7 S 2.803 3.197 8 O -0.949 6.949 9 O -0.948 6.948 10 C -0.792 4.792 11 C -0.042 4.042 12 C -0.164 4.164 13 C 0.031 3.969 14 C -0.010 4.010 15 C -0.635 4.635 16 H 0.071 0.929 17 C -0.184 4.184 18 N -0.542 5.542 19 Si 0.901 3.099 20 H -0.212 1.212 21 H -0.213 1.213 22 H -0.208 1.208 23 C -0.164 4.164 24 C -0.040 4.040 25 C 0.052 3.948 26 H 0.102 0.898 27 C -0.035 4.035 28 O -0.370 6.370 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.080 0.920 41 H 0.146 0.854 42 H 0.148 0.852 43 H 0.094 0.906 44 H 0.070 0.930 45 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -22.279 7.415 1.949 23.562 hybrid contribution -1.066 0.653 0.229 1.271 sum -23.346 8.069 2.179 24.796 Atomic orbital electron populations 1.21986 0.94291 1.01699 1.02837 1.22078 0.96494 0.99173 0.92849 0.89223 1.22952 1.02268 0.93960 0.97717 1.22064 1.00821 0.98097 0.79367 1.58705 1.78055 1.25375 1.22245 1.01327 0.73828 0.71942 0.72636 1.93525 1.85903 1.82950 1.32496 1.93563 1.79304 1.42186 1.79779 1.30375 1.24594 1.14047 1.10193 1.20765 0.96034 0.93764 0.93664 1.21211 0.92692 1.00954 1.01520 1.20870 0.98225 0.87992 0.89775 1.18657 0.85910 0.98494 0.97948 1.21856 0.94774 1.17517 1.29394 0.92859 1.25925 0.93945 1.00946 0.97625 1.70777 1.38744 1.18938 1.25781 0.83468 0.75897 0.74920 0.75600 1.21227 1.21295 1.20774 1.21219 0.94377 1.01535 0.99256 1.20760 0.93922 0.94081 0.95204 1.21175 0.97846 0.81500 0.94287 0.89848 1.22898 0.98012 0.84538 0.98061 1.86391 1.64404 1.27047 1.59167 0.92864 0.92733 0.90554 0.90248 0.89819 0.90992 0.90371 0.85233 0.85364 0.95641 0.95631 0.91992 0.85369 0.85197 0.90603 0.92999 0.77218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 7.90 37.16 0.29 -0.78 16 2 C -0.09 -0.69 3.32 -88.78 -0.30 -0.99 16 3 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 4 C -0.13 -0.96 6.59 -24.46 -0.16 -1.12 16 5 C 0.12 1.08 6.73 -2.41 -0.02 1.07 16 6 N -1.01 -11.12 3.40 -104.29 -0.35 -11.47 16 7 S 2.71 38.59 5.86 -107.50 -0.63 37.96 16 8 O -0.96 -15.06 14.52 -57.17 -0.83 -15.89 16 9 O -0.96 -15.59 16.95 -57.17 -0.97 -16.56 16 10 C -0.70 -11.31 5.97 -39.58 -0.24 -11.55 16 11 C -0.02 -0.38 9.52 -39.58 -0.38 -0.75 16 12 C -0.14 -2.73 9.70 -39.58 -0.38 -3.11 16 13 C 0.03 0.67 5.07 -104.62 -0.53 0.14 16 14 C 0.03 0.65 4.42 -29.04 -0.13 0.52 16 15 C -0.60 -16.50 9.09 -34.44 -0.31 -16.81 16 16 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 17 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 18 N -0.91 -26.77 13.65 55.43 0.76 -26.02 16 19 Si 1.07 24.86 29.90 -169.99 -5.08 19.78 16 20 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 C -0.14 -2.75 9.70 -39.58 -0.38 -3.13 16 24 C -0.02 -0.34 9.52 -39.58 -0.38 -0.71 16 25 C 0.16 1.61 3.28 -66.96 -0.22 1.39 16 26 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 27 C 0.04 0.43 5.72 37.16 0.21 0.64 16 28 O -0.57 -4.79 11.62 -35.23 -0.41 -5.20 16 29 H 0.05 0.38 6.93 -51.93 -0.36 0.02 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.56 5.62 -51.93 -0.29 0.27 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.47 8.04 -51.93 -0.42 0.06 16 34 H 0.07 0.57 7.67 -51.93 -0.40 0.17 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.13 1.83 7.62 -52.49 -0.40 1.43 16 37 H 0.13 2.29 8.06 -52.49 -0.42 1.86 16 38 H 0.03 0.64 7.95 -51.93 -0.41 0.22 16 39 H 0.03 0.64 7.95 -51.93 -0.41 0.23 16 40 H 0.27 7.85 7.22 -40.82 -0.29 7.55 16 41 H 0.13 2.31 8.06 -52.49 -0.42 1.89 16 42 H 0.13 1.88 7.62 -52.49 -0.40 1.48 16 43 H 0.08 0.87 5.90 -51.93 -0.31 0.56 16 44 H 0.05 0.45 6.66 -51.93 -0.35 0.10 16 45 H 0.38 1.65 9.12 45.56 0.42 2.07 16 LS Contribution 372.08 15.07 5.61 5.61 Total: -1.00 -33.77 372.08 -10.71 -44.48 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -5.79 Total: 2.04 kcal Atomic # 6 Polarization: -31.72 SS G_CDS: -3.01 Total: -34.73 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.40 Total: -37.49 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -2.21 Total: -37.64 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.08 Total: 19.78 kcal Atomic # 16 Polarization: 38.59 SS G_CDS: -0.63 Total: 37.96 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.77 -10.71 -44.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885127313.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.496 kcal (2) G-P(sol) polarization free energy of solvation -33.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds