Wall clock time and date at job start Tue Mar 31 2020 23:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 110.64193 * 2 1 4 4 C 1.55162 * 110.71668 * 123.33288 * 2 1 3 5 5 C 1.55127 * 101.48538 * 82.69771 * 4 2 1 6 6 N 1.47426 * 104.72495 * 37.29144 * 5 4 2 7 7 S 1.65597 * 125.65045 * 155.81399 * 6 5 4 8 8 O 1.42101 * 106.40415 * 162.08153 * 7 6 5 9 9 O 1.42100 * 106.40078 * 29.16263 * 7 6 5 10 10 C 1.76198 * 107.21844 * 275.62411 * 7 6 5 11 11 C 1.38240 * 119.99942 * 90.00102 * 10 7 6 12 12 C 1.38234 * 119.99845 * 179.97438 * 11 10 7 13 13 C 1.38237 * 120.00275 * 0.02562 * 12 11 10 14 14 C 1.50700 * 120.00154 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.46814 * 90.00298 * 14 13 12 16 16 H 1.07996 * 120.00216 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99793 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00520 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00161 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46817 * 269.99924 * 19 17 15 21 21 H 1.48501 * 109.47114 * 29.99783 * 19 17 15 22 22 H 1.48497 * 109.47323 * 150.00194 * 19 17 15 23 23 C 1.38237 * 119.99645 * 0.25274 * 13 12 11 24 24 C 1.38232 * 120.00121 * 359.47312 * 23 13 12 25 25 C 1.47024 * 108.69926 * 335.55410 * 6 5 4 26 26 H 1.09006 * 109.87738 * 120.85591 * 25 6 5 27 27 C 1.53001 * 109.88205 * 241.86282 * 25 6 5 28 28 O 1.42894 * 109.47172 * 177.68762 * 27 25 6 29 29 H 1.09005 * 109.47193 * 183.14259 * 1 2 3 30 30 H 1.08997 * 109.47202 * 303.14673 * 1 2 3 31 31 H 1.09005 * 109.46732 * 63.14481 * 1 2 3 32 32 H 1.09002 * 111.00153 * 200.93823 * 4 2 1 33 33 H 1.08996 * 111.00282 * 324.78755 * 4 2 1 34 34 H 1.08998 * 110.49873 * 278.45281 * 5 4 2 35 35 H 1.09005 * 110.34238 * 156.05809 * 5 4 2 36 36 H 1.07998 * 120.00018 * 359.97196 * 11 10 7 37 37 H 1.07998 * 120.00303 * 179.97438 * 12 11 10 38 38 H 1.09003 * 109.47051 * 329.99979 * 14 13 12 39 39 H 1.09005 * 109.46860 * 209.99991 * 14 13 12 40 40 H 0.97002 * 119.99319 * 359.97438 * 18 17 15 41 41 H 1.08000 * 119.99963 * 179.72959 * 23 13 12 42 42 H 1.07996 * 120.00327 * 180.30189 * 24 23 13 43 43 H 1.08997 * 109.46983 * 297.69095 * 27 25 6 44 44 H 1.09003 * 109.46583 * 57.68982 * 27 25 6 45 45 H 0.96695 * 114.00236 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0789 -0.7975 1.2125 5 6 2.0075 -2.2536 0.6825 6 7 2.3716 -2.1520 -0.7425 7 16 3.0024 -3.3725 -1.6670 8 8 2.8076 -2.9914 -3.0220 9 8 2.5049 -4.5868 -1.1219 10 6 4.7438 -3.3833 -1.3986 11 6 5.2819 -4.1518 -0.3833 12 6 6.6482 -4.1608 -0.1731 13 6 7.4763 -3.4008 -0.9779 14 6 8.9657 -3.4101 -0.7483 15 6 9.5936 -4.5067 -1.5694 16 1 8.9759 -5.1345 -2.1945 17 6 10.9565 -4.7094 -1.5217 18 7 11.7087 -3.9453 -0.7601 19 14 11.7348 -6.0692 -2.5388 20 1 11.7710 -7.3230 -1.7439 21 1 10.9337 -6.2867 -3.7702 22 1 13.1185 -5.6790 -2.9109 23 6 6.9376 -2.6279 -1.9895 24 6 5.5719 -2.6233 -2.2033 25 6 2.0760 -0.7892 -1.2085 26 1 2.9864 -0.3191 -1.5805 27 6 1.0237 -0.8355 -2.3182 28 8 0.7037 0.4957 -2.7271 29 1 -0.3634 -1.0262 0.0563 30 1 -0.3633 0.5619 0.8604 31 1 -0.3633 0.4643 -0.9169 32 1 3.1061 -0.5097 1.4368 33 1 1.4395 -0.6697 2.0859 34 1 0.9974 -2.6493 0.7885 35 1 2.7208 -2.8852 1.2122 36 1 4.6349 -4.7452 0.2457 37 1 7.0686 -4.7608 0.6203 38 1 9.1694 -3.5849 0.3081 39 1 9.3850 -2.4486 -1.0450 40 1 11.3046 -3.2389 -0.2322 41 1 7.5842 -2.0307 -2.6154 42 1 5.1515 -2.0233 -2.9967 43 1 1.4170 -1.3923 -3.1688 44 1 0.1249 -1.3273 -1.9462 45 1 0.0409 0.5429 -3.4295 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885127313.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:26 Heat of formation + Delta-G solvation = -130.411339 kcal Electronic energy + Delta-G solvation = -27866.877971 eV Core-core repulsion = 23974.773246 eV Total energy + Delta-G solvation = -3892.104726 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.50373 -40.37848 -38.51215 -37.24235 -37.07683 -35.99771 -33.33522 -33.25673 -32.09763 -31.30528 -28.95103 -27.74818 -25.77724 -25.52338 -23.87000 -23.10015 -22.67918 -20.90886 -20.05280 -19.16321 -18.93490 -18.75456 -18.04976 -17.09325 -16.71094 -16.49471 -16.31223 -16.01347 -15.70238 -15.53190 -15.30281 -15.10459 -14.65717 -14.59766 -14.26170 -13.93837 -13.78664 -13.60273 -13.57812 -13.39763 -13.35912 -13.28550 -13.20132 -12.79474 -12.58839 -12.54250 -12.43250 -12.17397 -11.99096 -11.80217 -11.71968 -11.57054 -11.32078 -11.17172 -10.74235 -10.64965 -10.20249 -10.09363 -9.99023 -8.76669 -6.50802 -0.83587 -0.19183 0.26641 1.49224 1.57019 1.75815 1.79634 2.40114 2.50721 2.64248 3.01806 3.05968 3.26648 3.60883 3.64176 3.78383 3.84472 3.96772 3.99154 4.24483 4.24803 4.31327 4.33199 4.35235 4.56931 4.61444 4.66432 4.67209 4.72345 4.85624 4.91335 4.93029 4.96649 4.98161 5.03754 5.07070 5.17535 5.18544 5.24325 5.32119 5.43570 5.57891 5.67240 5.74646 5.85525 6.05415 6.45318 6.87037 7.28562 8.62742 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021374 B = 0.002734 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.677021 B =10237.120522 C =10374.220799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.082 4.082 3 H 0.092 0.908 4 C -0.123 4.123 5 C 0.108 3.892 6 N -0.999 5.999 7 S 2.730 3.270 8 O -0.972 6.972 9 O -0.974 6.974 10 C -0.701 4.701 11 C -0.018 4.018 12 C -0.154 4.154 13 C 0.000 4.000 14 C 0.033 3.967 15 C -0.609 4.609 16 H 0.045 0.955 17 C -0.029 4.029 18 N -0.931 5.931 19 Si 1.118 2.882 20 H -0.270 1.270 21 H -0.274 1.274 22 H -0.278 1.278 23 C -0.155 4.155 24 C -0.018 4.018 25 C 0.148 3.852 26 H 0.075 0.925 27 C 0.047 3.953 28 O -0.572 6.572 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.158 0.842 37 H 0.131 0.869 38 H 0.011 0.989 39 H 0.010 0.990 40 H 0.259 0.741 41 H 0.128 0.872 42 H 0.153 0.847 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.216 8.598 2.596 27.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 H 0.110 0.890 4 C -0.162 4.162 5 C -0.016 4.016 6 N -0.839 5.839 7 S 2.823 3.177 8 O -0.962 6.962 9 O -0.964 6.964 10 C -0.788 4.788 11 C -0.037 4.037 12 C -0.172 4.172 13 C 0.000 4.000 14 C -0.004 4.004 15 C -0.647 4.647 16 H 0.063 0.937 17 C -0.227 4.227 18 N -0.567 5.567 19 Si 0.939 3.061 20 H -0.196 1.196 21 H -0.199 1.199 22 H -0.204 1.204 23 C -0.174 4.174 24 C -0.037 4.037 25 C 0.042 3.958 26 H 0.093 0.907 27 C -0.032 4.032 28 O -0.379 6.379 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.125 0.875 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.175 0.825 37 H 0.149 0.851 38 H 0.029 0.971 39 H 0.028 0.972 40 H 0.069 0.931 41 H 0.146 0.854 42 H 0.171 0.829 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -24.786 7.403 2.083 25.952 hybrid contribution -0.468 0.764 0.199 0.918 sum -25.254 8.167 2.282 26.640 Atomic orbital electron populations 1.21968 0.93322 1.01980 1.03298 1.22090 0.97235 0.98921 0.92006 0.88979 1.22956 1.02614 0.92519 0.98123 1.22401 1.01785 0.99462 0.77923 1.58438 1.77068 1.25225 1.23210 1.00652 0.72752 0.71958 0.72335 1.93512 1.85649 1.83248 1.33828 1.93541 1.79069 1.43723 1.80115 1.30896 1.26259 1.12548 1.09054 1.21040 0.95242 0.93546 0.93879 1.21291 0.93688 1.00819 1.01435 1.20628 0.96361 0.90848 0.92191 1.18434 0.88735 0.96769 0.96473 1.22168 0.95130 1.18041 1.29351 0.93689 1.27370 0.94975 1.02447 0.97951 1.70893 1.39004 1.19732 1.27094 0.82911 0.75372 0.72910 0.74903 1.19564 1.19869 1.20356 1.21279 0.95621 1.01551 0.98959 1.20989 0.92915 0.94096 0.95668 1.21384 0.97906 0.80959 0.95593 0.90712 1.22768 0.98273 0.84987 0.97187 1.86356 1.65271 1.26230 1.60085 0.92735 0.91428 0.90896 0.90606 0.87533 0.89521 0.89917 0.82455 0.85102 0.97062 0.97215 0.93134 0.85365 0.82896 0.92586 0.91813 0.75178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 7.90 71.98 0.57 -1.08 16 2 C -0.08 -1.12 3.32 -9.60 -0.03 -1.15 16 3 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 4 C -0.12 -1.45 6.59 32.06 0.21 -1.24 16 5 C 0.11 1.63 6.73 86.93 0.58 2.21 16 6 N -1.00 -19.94 3.40 -483.86 -1.64 -21.58 16 7 S 2.73 72.80 5.86 -56.49 -0.33 72.47 16 8 O -0.97 -29.07 14.52 -128.00 -1.86 -30.93 16 9 O -0.97 -29.60 16.95 -128.00 -2.17 -31.77 16 10 C -0.70 -21.59 5.97 22.27 0.13 -21.45 16 11 C -0.02 -0.57 9.52 22.27 0.21 -0.36 16 12 C -0.15 -5.80 9.70 22.27 0.22 -5.59 16 13 C 0.00 0.00 5.07 -19.86 -0.10 -0.10 16 14 C 0.03 1.68 4.42 29.10 0.13 1.81 16 15 C -0.61 -34.56 9.09 25.60 0.23 -34.33 16 16 H 0.04 2.57 7.74 -2.91 -0.02 2.55 16 17 C -0.03 -1.65 5.46 84.65 0.46 -1.19 16 18 N -0.93 -56.33 13.65 21.45 0.29 -56.04 16 19 Si 1.12 50.07 29.90 68.60 2.05 52.12 16 20 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 22 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 23 C -0.16 -5.97 9.70 22.27 0.22 -5.75 16 24 C -0.02 -0.57 9.52 22.27 0.21 -0.36 16 25 C 0.15 2.71 3.28 45.34 0.15 2.86 16 26 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 27 C 0.05 0.84 5.72 71.98 0.41 1.25 16 28 O -0.57 -8.57 11.62 -148.98 -1.73 -10.30 16 29 H 0.05 0.60 6.93 -2.38 -0.02 0.58 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.88 5.62 -2.38 -0.01 0.86 16 32 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.11 0.80 8.04 -2.39 -0.02 0.78 16 34 H 0.09 1.09 7.67 -2.39 -0.02 1.07 16 35 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.16 4.07 7.62 -2.91 -0.02 4.05 16 37 H 0.13 4.74 8.06 -2.91 -0.02 4.72 16 38 H 0.01 0.59 7.95 -2.39 -0.02 0.57 16 39 H 0.01 0.51 7.95 -2.38 -0.02 0.50 16 40 H 0.26 15.72 7.22 -92.71 -0.67 15.05 16 41 H 0.13 4.78 8.06 -2.91 -0.02 4.75 16 42 H 0.15 4.21 7.62 -2.91 -0.02 4.19 16 43 H 0.06 1.21 5.90 -2.39 -0.01 1.20 16 44 H 0.06 0.96 6.66 -2.39 -0.02 0.94 16 45 H 0.40 2.66 9.12 -74.06 -0.68 1.98 16 Total: -1.00 -73.00 372.08 -1.35 -74.35 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.43 Total: 16.14 kcal Atomic # 6 Polarization: -68.07 SS G_CDS: 3.60 Total: -64.47 kcal Atomic # 7 Polarization: -76.27 SS G_CDS: -1.35 Total: -77.62 kcal Atomic # 8 Polarization: -67.24 SS G_CDS: -5.76 Total: -73.00 kcal Atomic # 14 Polarization: 50.07 SS G_CDS: 2.05 Total: 52.12 kcal Atomic # 16 Polarization: 72.80 SS G_CDS: -0.33 Total: 72.47 kcal Total: -73.00 -1.35 -74.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885127313.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.058 kcal (2) G-P(sol) polarization free energy of solvation -72.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds