Wall clock time and date at job start Tue Mar 31 2020 23:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.57363 * 2 1 4 4 C 1.53094 * 109.51883 * 239.84619 * 2 1 3 5 5 O 1.42909 * 109.41254 * 182.48607 * 4 2 1 6 6 C 1.42900 * 114.09673 * 61.15434 * 5 4 2 7 7 C 1.53093 * 109.41543 * 298.84017 * 6 5 4 8 8 C 1.53174 * 109.52258 * 120.15799 * 2 1 3 9 9 H 1.08999 * 109.61419 * 296.79313 * 8 2 1 10 10 N 1.46494 * 109.54421 * 57.02177 * 8 2 1 11 11 S 1.65604 * 120.00141 * 214.55567 * 10 8 2 12 12 O 1.42104 * 106.39851 * 311.46018 * 11 10 8 13 13 O 1.42095 * 106.40619 * 178.54026 * 11 10 8 14 14 C 1.76203 * 107.21614 * 64.99646 * 11 10 8 15 15 C 1.38226 * 120.00055 * 90.00329 * 14 11 10 16 16 C 1.38234 * 120.00461 * 179.97438 * 15 14 11 17 17 C 1.38239 * 119.99681 * 0.02568 * 16 15 14 18 18 C 1.50699 * 120.00049 * 179.97438 * 17 16 15 19 19 C 1.50706 * 109.46817 * 89.99986 * 18 17 16 20 20 H 1.07995 * 120.00167 * 359.72198 * 19 18 17 21 21 C 1.37879 * 119.99394 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00338 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99424 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47474 * 90.00322 * 23 21 19 25 25 H 1.48507 * 109.46754 * 210.00056 * 23 21 19 26 26 H 1.48498 * 109.47278 * 329.99887 * 23 21 19 27 27 C 1.38236 * 119.99618 * 0.24824 * 17 16 15 28 28 C 1.38231 * 120.00348 * 359.49741 * 27 17 16 29 29 H 1.08999 * 109.47259 * 299.84205 * 1 2 3 30 30 H 1.09001 * 109.46945 * 59.84385 * 1 2 3 31 31 H 1.09008 * 109.46913 * 179.84233 * 1 2 3 32 32 H 1.09000 * 109.48492 * 62.50243 * 4 2 1 33 33 H 1.08999 * 109.48979 * 302.47048 * 4 2 1 34 34 H 1.09006 * 109.47880 * 178.85902 * 6 5 4 35 35 H 1.08992 * 109.48312 * 58.82969 * 6 5 4 36 36 H 1.08993 * 109.52362 * 297.70345 * 7 6 5 37 37 H 1.09004 * 109.57091 * 177.54832 * 7 6 5 38 38 H 0.97005 * 120.00432 * 34.55448 * 10 8 2 39 39 H 1.08004 * 120.00431 * 0.02562 * 15 14 11 40 40 H 1.07993 * 120.00649 * 180.02562 * 16 15 14 41 41 H 1.09000 * 109.47247 * 330.00049 * 18 17 16 42 42 H 1.09001 * 109.47358 * 209.99475 * 18 17 16 43 43 H 0.96996 * 119.99730 * 179.97438 * 22 21 19 44 44 H 1.08004 * 119.99728 * 179.72715 * 27 17 16 45 45 H 1.08004 * 120.00373 * 180.24839 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0415 -0.7248 -1.2477 5 8 3.4694 -0.7743 -1.2164 6 6 4.0043 -1.4816 -0.0958 7 6 3.5716 -0.7871 1.1981 8 6 2.0419 -0.7253 1.2483 9 1 1.7280 -0.1838 2.1406 10 7 1.4974 -2.0848 1.2830 11 16 1.1212 -2.7894 2.7337 12 8 2.2462 -2.5923 3.5791 13 8 0.5917 -4.0728 2.4312 14 6 -0.1995 -1.8596 3.4380 15 6 -1.5100 -2.2040 3.1645 16 6 -2.5461 -1.4750 3.7174 17 6 -2.2718 -0.4012 4.5436 18 6 -3.4013 0.3940 5.1460 19 6 -3.7857 -0.2061 6.4739 20 1 -3.2672 -1.0789 6.8424 21 6 -4.8028 0.3561 7.2158 22 7 -5.4378 1.4157 6.7645 23 14 -5.2788 -0.3872 8.8621 24 1 -4.4779 0.2451 9.9409 25 1 -6.7230 -0.1495 9.1135 26 1 -5.0141 -1.8483 8.8406 27 6 -0.9612 -0.0533 4.8126 28 6 0.0749 -0.7855 4.2638 29 1 -0.3634 0.5114 0.8914 30 1 -0.3633 0.5163 -0.8886 31 1 -0.3633 -1.0277 -0.0028 32 1 1.7158 -0.1884 -2.1389 33 1 1.6431 -1.7392 -1.2680 34 1 5.0926 -1.4904 -0.1573 35 1 3.6316 -2.5058 -0.1009 36 1 3.9780 0.2240 1.2223 37 1 3.9418 -1.3491 2.0556 38 1 1.3572 -2.5725 0.4562 39 1 -1.7244 -3.0433 2.5193 40 1 -3.5700 -1.7443 3.5041 41 1 -4.2599 0.3714 4.4748 42 1 -3.0817 1.4257 5.2925 43 1 -6.1536 1.8109 7.2863 44 1 -0.7468 0.7884 5.4545 45 1 1.0988 -0.5162 4.4772 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885141017.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:12 Heat of formation + Delta-G solvation = -114.213925 kcal Electronic energy + Delta-G solvation = -28024.153733 eV Core-core repulsion = 24132.751380 eV Total energy + Delta-G solvation = -3891.402353 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.17264 -38.85625 -37.19816 -35.96488 -35.81211 -33.71670 -32.96610 -31.60352 -31.10433 -30.63152 -27.47758 -26.99156 -25.21512 -23.76131 -22.61253 -22.40201 -20.96791 -20.38592 -19.37700 -18.00632 -17.43458 -16.51221 -16.44051 -16.41789 -16.13770 -15.40738 -15.16030 -14.93395 -14.62817 -14.41693 -14.39468 -13.95679 -13.67049 -13.18707 -13.00458 -12.88894 -12.57945 -12.29779 -12.27147 -12.23700 -12.05217 -11.97257 -11.80917 -11.74592 -11.52482 -11.43034 -11.23948 -10.96339 -10.94006 -10.63141 -10.54386 -10.52175 -9.88531 -9.79265 -9.70095 -9.56614 -8.63999 -8.56912 -8.43162 -6.20185 -4.25329 0.44577 1.27515 1.74189 2.98822 3.22203 3.28918 3.33154 3.58029 3.69745 4.06077 4.24519 4.34402 4.37190 4.47018 4.49759 4.65277 4.85572 4.94346 5.07393 5.13026 5.17847 5.19374 5.21256 5.30753 5.39005 5.51667 5.54298 5.60265 5.67559 5.75410 5.77084 5.83440 5.86297 5.95754 6.05988 6.19781 6.27636 6.45460 6.71703 6.79171 6.86451 6.88324 7.25025 7.38427 7.54839 7.74858 8.09796 8.79488 9.39893 10.89833 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020681 B = 0.002877 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.606959 B = 9730.707648 C =10306.055090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 H 0.093 0.907 4 C 0.065 3.935 5 O -0.383 6.383 6 C 0.061 3.939 7 C -0.175 4.175 8 C 0.158 3.842 9 H 0.093 0.907 10 N -1.115 6.115 11 S 2.695 3.305 12 O -0.962 6.962 13 O -0.967 6.967 14 C -0.702 4.702 15 C -0.021 4.021 16 C -0.145 4.145 17 C 0.028 3.972 18 C 0.039 3.961 19 C -0.518 4.518 20 H 0.059 0.941 21 C 0.061 3.939 22 N -0.891 5.891 23 Si 0.899 3.101 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.272 1.272 27 C -0.145 4.145 28 C -0.026 4.026 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.050 0.950 34 H 0.094 0.906 35 H 0.052 0.948 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.413 0.587 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.034 0.966 42 H 0.035 0.965 43 H 0.264 0.736 44 H 0.128 0.872 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.447 -2.966 -15.899 22.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 H 0.111 0.889 4 C -0.012 4.012 5 O -0.301 6.301 6 C -0.015 4.015 7 C -0.215 4.215 8 C 0.051 3.949 9 H 0.111 0.889 10 N -0.873 5.873 11 S 2.788 3.212 12 O -0.952 6.952 13 O -0.957 6.957 14 C -0.792 4.792 15 C -0.040 4.040 16 C -0.164 4.164 17 C 0.028 3.972 18 C 0.003 3.997 19 C -0.556 4.556 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.529 5.529 23 Si 0.726 3.274 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.197 1.197 27 C -0.164 4.164 28 C -0.045 4.045 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.114 0.886 33 H 0.068 0.932 34 H 0.112 0.888 35 H 0.070 0.930 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.249 0.751 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.074 0.926 44 H 0.146 0.854 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 15.867 -3.401 -15.472 22.421 hybrid contribution -1.240 -0.075 0.976 1.580 sum 14.627 -3.476 -14.496 20.884 Atomic orbital electron populations 1.21771 0.93445 1.02717 1.02711 1.22032 0.97297 1.00754 0.94927 0.88918 1.22646 0.81065 0.99639 0.97857 1.87939 1.20169 1.76446 1.45585 1.22550 0.99069 0.94746 0.85181 1.22731 0.95780 1.03156 0.99791 1.20814 0.92925 0.81602 0.99600 0.88860 1.55760 1.80266 1.26088 1.25235 1.01664 0.73967 0.73054 0.72503 1.93561 1.49710 1.86131 1.65810 1.93569 1.80631 1.37436 1.84063 1.30274 1.14004 1.16310 1.18607 1.20747 0.90981 0.96549 0.95733 1.21244 0.99198 0.96580 0.99336 1.21117 0.96180 0.92173 0.87773 1.18539 0.90501 0.94817 0.95879 1.20966 1.18223 1.13660 1.02781 0.92295 1.25001 0.95886 0.94901 0.98325 1.69942 1.23268 1.21318 1.38419 0.86480 0.77726 0.79703 0.83505 1.20425 1.21013 1.19691 1.21241 0.92354 1.01354 1.01405 1.20774 0.99507 0.91682 0.92573 0.91567 0.92215 0.92079 0.88600 0.93163 0.88758 0.93015 0.89804 0.89002 0.75150 0.85352 0.85382 0.94734 0.94720 0.92604 0.85373 0.85347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.01 37.16 0.33 -0.85 16 2 C -0.13 -0.97 2.74 -90.48 -0.25 -1.22 16 3 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 4 C 0.06 0.48 5.94 37.21 0.22 0.70 16 5 O -0.38 -3.48 10.77 -35.23 -0.38 -3.86 16 6 C 0.06 0.49 6.68 37.21 0.25 0.74 16 7 C -0.18 -1.44 5.83 -26.59 -0.16 -1.59 16 8 C 0.16 1.36 2.50 -67.75 -0.17 1.19 16 9 H 0.09 0.82 7.24 -51.93 -0.38 0.44 16 10 N -1.11 -10.28 4.00 -4.74 -0.02 -10.30 16 11 S 2.70 35.12 5.65 -107.50 -0.61 34.52 16 12 O -0.96 -14.52 16.53 -57.17 -0.94 -15.46 16 13 O -0.97 -15.03 17.28 -57.17 -0.99 -16.02 16 14 C -0.70 -10.40 5.82 -39.59 -0.23 -10.63 16 15 C -0.02 -0.32 9.52 -39.59 -0.38 -0.70 16 16 C -0.14 -2.59 9.70 -39.58 -0.38 -2.97 16 17 C 0.03 0.56 5.07 -104.62 -0.53 0.03 16 18 C 0.04 0.94 5.11 -29.03 -0.15 0.80 16 19 C -0.52 -13.88 9.09 -34.44 -0.31 -14.19 16 20 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -25.27 13.29 55.43 0.74 -24.53 16 23 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 27 C -0.14 -2.56 9.70 -39.58 -0.38 -2.95 16 28 C -0.03 -0.40 8.90 -39.58 -0.35 -0.75 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.48 7.50 -51.92 -0.39 0.09 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.33 6.70 -51.93 -0.35 -0.02 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.39 7.64 -51.93 -0.40 0.00 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.83 7.62 -51.93 -0.40 0.44 16 38 H 0.41 3.08 7.05 -34.47 -0.24 2.84 16 39 H 0.13 1.73 7.62 -52.48 -0.40 1.33 16 40 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 41 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 42 H 0.03 0.86 8.08 -51.93 -0.42 0.44 16 43 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.13 2.17 8.06 -52.48 -0.42 1.74 16 45 H 0.13 1.67 7.62 -52.48 -0.40 1.27 16 LS Contribution 375.61 15.07 5.66 5.66 Total: -1.00 -32.38 375.61 -10.86 -43.24 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -6.71 Total: 1.66 kcal Atomic # 6 Polarization: -28.25 SS G_CDS: -2.58 Total: -30.84 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.72 Total: -34.83 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: -2.31 Total: -35.35 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 35.12 SS G_CDS: -0.61 Total: 34.52 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.38 -10.86 -43.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885141017.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.972 kcal (2) G-P(sol) polarization free energy of solvation -32.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds