Wall clock time and date at job start Tue Mar 31 2020 23:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.57363 * 2 1 4 4 C 1.53094 * 109.51883 * 239.84619 * 2 1 3 5 5 O 1.42909 * 109.41254 * 182.48607 * 4 2 1 6 6 C 1.42900 * 114.09673 * 61.15434 * 5 4 2 7 7 C 1.53093 * 109.41543 * 298.84017 * 6 5 4 8 8 C 1.53174 * 109.52258 * 120.15799 * 2 1 3 9 9 H 1.08999 * 109.61419 * 296.79313 * 8 2 1 10 10 N 1.46494 * 109.54421 * 57.02177 * 8 2 1 11 11 S 1.65604 * 120.00141 * 214.55567 * 10 8 2 12 12 O 1.42104 * 106.39851 * 311.46018 * 11 10 8 13 13 O 1.42095 * 106.40619 * 178.54026 * 11 10 8 14 14 C 1.76203 * 107.21614 * 64.99646 * 11 10 8 15 15 C 1.38226 * 120.00055 * 90.00329 * 14 11 10 16 16 C 1.38234 * 120.00461 * 179.97438 * 15 14 11 17 17 C 1.38239 * 119.99681 * 0.02568 * 16 15 14 18 18 C 1.50699 * 120.00049 * 179.97438 * 17 16 15 19 19 C 1.50706 * 109.46817 * 89.99986 * 18 17 16 20 20 H 1.07995 * 120.00167 * 359.72198 * 19 18 17 21 21 C 1.37879 * 119.99394 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00338 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99424 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47474 * 90.00322 * 23 21 19 25 25 H 1.48507 * 109.46754 * 210.00056 * 23 21 19 26 26 H 1.48498 * 109.47278 * 329.99887 * 23 21 19 27 27 C 1.38236 * 119.99618 * 0.24824 * 17 16 15 28 28 C 1.38231 * 120.00348 * 359.49741 * 27 17 16 29 29 H 1.08999 * 109.47259 * 299.84205 * 1 2 3 30 30 H 1.09001 * 109.46945 * 59.84385 * 1 2 3 31 31 H 1.09008 * 109.46913 * 179.84233 * 1 2 3 32 32 H 1.09000 * 109.48492 * 62.50243 * 4 2 1 33 33 H 1.08999 * 109.48979 * 302.47048 * 4 2 1 34 34 H 1.09006 * 109.47880 * 178.85902 * 6 5 4 35 35 H 1.08992 * 109.48312 * 58.82969 * 6 5 4 36 36 H 1.08993 * 109.52362 * 297.70345 * 7 6 5 37 37 H 1.09004 * 109.57091 * 177.54832 * 7 6 5 38 38 H 0.97005 * 120.00432 * 34.55448 * 10 8 2 39 39 H 1.08004 * 120.00431 * 0.02562 * 15 14 11 40 40 H 1.07993 * 120.00649 * 180.02562 * 16 15 14 41 41 H 1.09000 * 109.47247 * 330.00049 * 18 17 16 42 42 H 1.09001 * 109.47358 * 209.99475 * 18 17 16 43 43 H 0.96996 * 119.99730 * 179.97438 * 22 21 19 44 44 H 1.08004 * 119.99728 * 179.72715 * 27 17 16 45 45 H 1.08004 * 120.00373 * 180.24839 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0415 -0.7248 -1.2477 5 8 3.4694 -0.7743 -1.2164 6 6 4.0043 -1.4816 -0.0958 7 6 3.5716 -0.7871 1.1981 8 6 2.0419 -0.7253 1.2483 9 1 1.7280 -0.1838 2.1406 10 7 1.4974 -2.0848 1.2830 11 16 1.1212 -2.7894 2.7337 12 8 2.2462 -2.5923 3.5791 13 8 0.5917 -4.0728 2.4312 14 6 -0.1995 -1.8596 3.4380 15 6 -1.5100 -2.2040 3.1645 16 6 -2.5461 -1.4750 3.7174 17 6 -2.2718 -0.4012 4.5436 18 6 -3.4013 0.3940 5.1460 19 6 -3.7857 -0.2061 6.4739 20 1 -3.2672 -1.0789 6.8424 21 6 -4.8028 0.3561 7.2158 22 7 -5.4378 1.4157 6.7645 23 14 -5.2788 -0.3872 8.8621 24 1 -4.4779 0.2451 9.9409 25 1 -6.7230 -0.1495 9.1135 26 1 -5.0141 -1.8483 8.8406 27 6 -0.9612 -0.0533 4.8126 28 6 0.0749 -0.7855 4.2638 29 1 -0.3634 0.5114 0.8914 30 1 -0.3633 0.5163 -0.8886 31 1 -0.3633 -1.0277 -0.0028 32 1 1.7158 -0.1884 -2.1389 33 1 1.6431 -1.7392 -1.2680 34 1 5.0926 -1.4904 -0.1573 35 1 3.6316 -2.5058 -0.1009 36 1 3.9780 0.2240 1.2223 37 1 3.9418 -1.3491 2.0556 38 1 1.3572 -2.5725 0.4562 39 1 -1.7244 -3.0433 2.5193 40 1 -3.5700 -1.7443 3.5041 41 1 -4.2599 0.3714 4.4748 42 1 -3.0817 1.4257 5.2925 43 1 -6.1536 1.8109 7.2863 44 1 -0.7468 0.7884 5.4545 45 1 1.0988 -0.5162 4.4772 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885141017.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:11 Heat of formation + Delta-G solvation = -135.446999 kcal Electronic energy + Delta-G solvation = -28025.074468 eV Core-core repulsion = 24132.751380 eV Total energy + Delta-G solvation = -3892.323088 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.81866 -40.22997 -38.35031 -36.98033 -36.66453 -35.59970 -33.61618 -33.32407 -31.96527 -31.81920 -29.25407 -27.60310 -25.86752 -25.57594 -23.73101 -23.23426 -22.48125 -21.17975 -20.32439 -19.04651 -18.63586 -18.47892 -17.32724 -17.02292 -16.87460 -16.80945 -16.49747 -15.99911 -15.76713 -15.55720 -15.24342 -15.21862 -14.63192 -14.50864 -14.45368 -13.93432 -13.69999 -13.41664 -13.40425 -13.27498 -13.20915 -13.13140 -13.02558 -12.85701 -12.68796 -12.66340 -12.53455 -12.23109 -12.03998 -11.99686 -11.83867 -11.67744 -11.41142 -11.21698 -10.66102 -10.57578 -10.30273 -9.95429 -9.94751 -8.27953 -6.40591 -0.64336 -0.06264 0.40121 1.37685 1.38165 1.49408 1.98029 2.34029 2.55466 2.81435 3.01114 3.04865 3.30770 3.59591 3.81479 3.86297 3.87807 3.97109 4.03484 4.15997 4.22783 4.30333 4.46347 4.47851 4.50630 4.58997 4.71768 4.81552 4.83676 4.87721 4.90891 4.93193 5.00578 5.10643 5.16247 5.20758 5.24918 5.25871 5.31535 5.33799 5.43823 5.66501 5.86778 5.92297 6.01166 6.09405 6.30373 6.71429 7.28635 8.82063 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020681 B = 0.002877 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.606959 B = 9730.707648 C =10306.055090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 H 0.097 0.903 4 C 0.061 3.939 5 O -0.397 6.397 6 C 0.057 3.943 7 C -0.174 4.174 8 C 0.150 3.850 9 H 0.093 0.907 10 N -1.098 6.098 11 S 2.723 3.277 12 O -0.977 6.977 13 O -0.987 6.987 14 C -0.698 4.698 15 C -0.016 4.016 16 C -0.154 4.154 17 C -0.001 4.001 18 C 0.048 3.952 19 C -0.534 4.534 20 H 0.053 0.947 21 C 0.010 3.990 22 N -0.925 5.925 23 Si 0.963 3.037 24 H -0.271 1.271 25 H -0.278 1.278 26 H -0.268 1.268 27 C -0.153 4.153 28 C -0.019 4.019 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.059 0.941 34 H 0.105 0.895 35 H 0.055 0.945 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.425 0.575 39 H 0.153 0.847 40 H 0.127 0.873 41 H 0.013 0.987 42 H 0.013 0.987 43 H 0.267 0.733 44 H 0.129 0.871 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.047 -4.065 -16.680 24.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.142 4.142 3 H 0.116 0.884 4 C -0.016 4.016 5 O -0.316 6.316 6 C -0.019 4.019 7 C -0.213 4.213 8 C 0.043 3.957 9 H 0.111 0.889 10 N -0.861 5.861 11 S 2.813 3.187 12 O -0.967 6.967 13 O -0.977 6.977 14 C -0.785 4.785 15 C -0.035 4.035 16 C -0.173 4.173 17 C -0.002 4.002 18 C 0.012 3.988 19 C -0.572 4.572 20 H 0.072 0.928 21 C -0.189 4.189 22 N -0.564 5.564 23 Si 0.787 3.213 24 H -0.197 1.197 25 H -0.204 1.204 26 H -0.193 1.193 27 C -0.172 4.172 28 C -0.038 4.038 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.125 0.875 33 H 0.077 0.923 34 H 0.123 0.877 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.263 0.737 39 H 0.171 0.829 40 H 0.145 0.855 41 H 0.031 0.969 42 H 0.032 0.968 43 H 0.076 0.924 44 H 0.147 0.853 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 17.452 -4.497 -16.253 24.268 hybrid contribution -1.634 0.264 1.101 1.987 sum 15.819 -4.233 -15.152 22.310 Atomic orbital electron populations 1.21777 0.93773 1.02730 1.02479 1.21968 0.96845 1.00907 0.94490 0.88442 1.22771 0.80415 1.00317 0.98075 1.87930 1.21021 1.76665 1.45958 1.22648 0.99817 0.94736 0.84711 1.22716 0.95186 1.03680 0.99706 1.21014 0.93439 0.80950 1.00292 0.88919 1.55403 1.79612 1.26577 1.24458 1.00873 0.72921 0.72192 0.72688 1.93546 1.49832 1.86256 1.67080 1.93542 1.80906 1.38754 1.84500 1.30729 1.14591 1.15559 1.17593 1.20973 0.90628 0.96600 0.95335 1.21277 1.00068 0.96473 0.99454 1.20793 0.95788 0.93482 0.90104 1.18257 0.91364 0.94324 0.94898 1.21296 1.18263 1.13502 1.04118 0.92836 1.25849 0.95870 0.95272 1.01893 1.70049 1.23880 1.22581 1.39924 0.85479 0.77613 0.78954 0.79237 1.19658 1.20353 1.19260 1.21284 0.92093 1.01946 1.01862 1.21015 1.00070 0.91095 0.91611 0.93146 0.91183 0.91937 0.87499 0.92267 0.87730 0.92675 0.88925 0.89740 0.73721 0.82906 0.85460 0.96919 0.96831 0.92378 0.85324 0.82691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.01 71.98 0.65 -1.45 16 2 C -0.12 -1.55 2.74 -10.70 -0.03 -1.58 16 3 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 4 C 0.06 0.73 5.94 72.01 0.43 1.16 16 5 O -0.40 -6.25 10.77 -148.98 -1.60 -7.85 16 6 C 0.06 0.77 6.68 72.01 0.48 1.25 16 7 C -0.17 -2.45 5.83 30.69 0.18 -2.27 16 8 C 0.15 2.23 2.50 45.11 0.11 2.34 16 9 H 0.09 1.41 7.24 -2.39 -0.02 1.40 16 10 N -1.10 -17.47 4.00 -168.91 -0.68 -18.14 16 11 S 2.72 64.47 5.65 -56.49 -0.32 64.15 16 12 O -0.98 -27.10 16.53 -128.00 -2.12 -29.22 16 13 O -0.99 -28.25 17.28 -128.00 -2.21 -30.46 16 14 C -0.70 -19.37 5.82 22.27 0.13 -19.24 16 15 C -0.02 -0.48 9.52 22.27 0.21 -0.27 16 16 C -0.15 -5.54 9.70 22.27 0.22 -5.32 16 17 C 0.00 -0.05 5.07 -19.86 -0.10 -0.16 16 18 C 0.05 2.44 5.11 29.10 0.15 2.59 16 19 C -0.53 -29.43 9.09 25.60 0.23 -29.20 16 20 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 21 C 0.01 0.57 5.46 84.66 0.46 1.03 16 22 N -0.93 -53.79 13.29 21.45 0.28 -53.51 16 23 Si 0.96 43.30 29.54 68.60 2.03 45.33 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 27 C -0.15 -5.44 9.70 22.27 0.22 -5.23 16 28 C -0.02 -0.55 8.90 22.27 0.20 -0.35 16 29 H 0.05 0.87 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 31 H 0.06 0.84 7.50 -2.38 -0.02 0.82 16 32 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.06 0.60 6.70 -2.39 -0.02 0.58 16 34 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.05 0.69 7.64 -2.39 -0.02 0.67 16 36 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.08 1.35 7.62 -2.38 -0.02 1.33 16 38 H 0.42 5.11 7.05 -96.74 -0.68 4.42 16 39 H 0.15 3.77 7.62 -2.91 -0.02 3.74 16 40 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 41 H 0.01 0.67 8.09 -2.39 -0.02 0.65 16 42 H 0.01 0.71 8.08 -2.39 -0.02 0.69 16 43 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 44 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 45 H 0.16 3.66 7.62 -2.91 -0.02 3.64 16 Total: -1.00 -69.53 375.61 -0.77 -70.30 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.31 Total: 16.09 kcal Atomic # 6 Polarization: -60.23 SS G_CDS: 3.53 Total: -56.69 kcal Atomic # 7 Polarization: -71.26 SS G_CDS: -0.39 Total: -71.65 kcal Atomic # 8 Polarization: -61.60 SS G_CDS: -5.93 Total: -67.53 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: 64.47 SS G_CDS: -0.32 Total: 64.15 kcal Total: -69.53 -0.77 -70.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885141017.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.145 kcal (2) G-P(sol) polarization free energy of solvation -69.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds