Wall clock time and date at job start Tue Mar 31 2020 23:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.57867 * 2 1 4 4 C 1.53095 * 109.51978 * 239.84127 * 2 1 3 5 5 O 1.42903 * 109.41233 * 182.48978 * 4 2 1 6 6 C 1.42898 * 114.10116 * 61.15758 * 5 4 2 7 7 C 1.53091 * 109.41714 * 298.84229 * 6 5 4 8 8 C 1.53177 * 109.16403 * 57.60336 * 7 6 5 9 9 H 1.09004 * 109.61229 * 62.93585 * 8 7 6 10 10 N 1.46496 * 109.54654 * 183.15317 * 8 7 6 11 11 S 1.65598 * 120.00381 * 264.56276 * 10 8 7 12 12 O 1.42103 * 106.39759 * 311.45628 * 11 10 8 13 13 O 1.42106 * 106.40081 * 178.53979 * 11 10 8 14 14 C 1.76197 * 107.21755 * 64.99652 * 11 10 8 15 15 C 1.38241 * 119.99899 * 90.00618 * 14 11 10 16 16 C 1.38228 * 119.99804 * 179.97438 * 15 14 11 17 17 C 1.38233 * 120.00141 * 0.02562 * 16 15 14 18 18 C 1.50707 * 120.00153 * 179.97438 * 17 16 15 19 19 C 1.50696 * 109.47007 * 89.99354 * 18 17 16 20 20 H 1.07999 * 120.00319 * 0.02562 * 19 18 17 21 21 C 1.37885 * 119.99717 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99913 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99766 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47353 * 269.99586 * 23 21 19 25 25 H 1.48501 * 109.47293 * 30.00037 * 23 21 19 26 26 H 1.48504 * 109.46680 * 149.99835 * 23 21 19 27 27 C 1.38233 * 120.00281 * 0.24877 * 17 16 15 28 28 C 1.38233 * 119.99973 * 269.97541 * 14 11 10 29 29 H 1.09006 * 109.46675 * 299.84811 * 1 2 3 30 30 H 1.09003 * 109.47166 * 59.84195 * 1 2 3 31 31 H 1.08993 * 109.47228 * 179.84605 * 1 2 3 32 32 H 1.09005 * 109.48165 * 302.46608 * 4 2 1 33 33 H 1.08994 * 109.48164 * 62.50526 * 4 2 1 34 34 H 1.09004 * 109.48418 * 58.82505 * 6 5 4 35 35 H 1.09003 * 109.48194 * 178.84665 * 6 5 4 36 36 H 1.09009 * 109.52046 * 297.70677 * 7 6 5 37 37 H 1.08999 * 109.52496 * 177.51494 * 7 6 5 38 38 H 0.97007 * 119.99523 * 84.55457 * 10 8 7 39 39 H 1.08000 * 119.99991 * 359.97018 * 15 14 11 40 40 H 1.07999 * 119.99710 * 179.97438 * 16 15 14 41 41 H 1.09005 * 109.46877 * 329.99631 * 18 17 16 42 42 H 1.09002 * 109.46993 * 209.99978 * 18 17 16 43 43 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 44 44 H 1.07997 * 120.00292 * 179.72861 * 27 17 16 45 45 H 1.07997 * 120.00408 * 0.02562 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0415 -0.7249 -1.2476 5 8 3.4694 -0.7744 -1.2163 6 6 4.0042 -1.4817 -0.0957 7 6 3.5716 -0.7873 1.1982 8 6 2.0419 -0.7253 1.2483 9 1 1.6354 -1.7363 1.2750 10 7 1.6199 0.0043 2.4466 11 16 1.2258 -0.8247 3.8249 12 8 0.3344 -1.8586 3.4302 13 8 0.8974 0.1539 4.8016 14 6 2.6918 -1.6211 4.3917 15 6 3.5365 -0.9696 5.2710 16 6 4.6863 -1.5946 5.7160 17 6 4.9918 -2.8708 5.2815 18 6 6.2457 -3.5520 5.7662 19 6 5.9433 -4.3246 7.0242 20 1 4.9431 -4.3230 7.4317 21 6 6.9436 -5.0337 7.6550 22 7 6.6796 -5.7084 8.7526 23 14 8.6736 -5.0359 6.9505 24 1 8.8178 -6.1637 5.9953 25 1 8.9219 -3.7537 6.2436 26 1 9.6566 -5.1919 8.0526 27 6 4.1501 -3.5201 4.3978 28 6 2.9969 -2.8975 3.9576 29 1 -0.3633 0.5115 0.8914 30 1 -0.3634 0.5163 -0.8886 31 1 -0.3633 -1.0276 -0.0028 32 1 1.6431 -1.7393 -1.2677 33 1 1.7159 -0.1886 -2.1388 34 1 3.6315 -2.5060 -0.1007 35 1 5.0925 -1.4907 -0.1573 36 1 3.9780 0.2239 1.2223 37 1 3.9416 -1.3502 2.0551 38 1 1.5715 0.9730 2.4326 39 1 3.2981 0.0277 5.6101 40 1 5.3464 -1.0855 6.4026 41 1 7.0090 -2.8023 5.9749 42 1 6.6080 -4.2354 4.9982 43 1 7.3833 -6.2075 9.1961 44 1 4.3910 -4.5154 4.0549 45 1 2.3370 -3.4065 3.2708 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885141018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:16 Heat of formation + Delta-G solvation = -111.979223 kcal Electronic energy + Delta-G solvation = -27962.006470 eV Core-core repulsion = 24070.701021 eV Total energy + Delta-G solvation = -3891.305449 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.01598 -38.95353 -37.22820 -36.19069 -35.83485 -33.74410 -33.08672 -31.78524 -31.20326 -30.68982 -28.01622 -27.08816 -24.64407 -23.55927 -22.65371 -22.46967 -20.85534 -20.72742 -19.48080 -17.95550 -17.46516 -16.94413 -16.93087 -16.44259 -15.69682 -15.34834 -15.05397 -15.03998 -14.76329 -14.41492 -14.32738 -14.03218 -13.88607 -13.27392 -13.21867 -12.87675 -12.68753 -12.45652 -12.30929 -12.13317 -12.11967 -12.03390 -11.93018 -11.82544 -11.77446 -11.53423 -11.28743 -11.03012 -10.96735 -10.61576 -10.56387 -10.27343 -10.14630 -9.90865 -9.68436 -9.55972 -8.73623 -8.68878 -8.49326 -6.21409 -4.23219 0.41356 1.20091 1.67361 2.94376 3.17790 3.26555 3.26964 3.56701 3.67411 4.00696 4.16367 4.27837 4.33583 4.40049 4.49323 4.68052 4.84575 4.86705 5.04636 5.07278 5.13278 5.15142 5.19107 5.22877 5.36557 5.41193 5.48526 5.52486 5.54101 5.68687 5.71195 5.77099 5.81740 5.87222 6.02639 6.10048 6.18786 6.38481 6.64659 6.65406 6.73889 6.77297 6.86660 7.23553 7.25538 7.50266 8.31335 8.82132 9.36685 10.91104 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015613 B = 0.003220 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.988078 B = 8693.676680 C = 9920.462737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 H 0.086 0.914 4 C 0.066 3.934 5 O -0.382 6.382 6 C 0.062 3.938 7 C -0.180 4.180 8 C 0.154 3.846 9 H 0.095 0.905 10 N -1.112 6.112 11 S 2.695 3.305 12 O -0.962 6.962 13 O -0.965 6.965 14 C -0.700 4.700 15 C -0.019 4.019 16 C -0.142 4.142 17 C 0.033 3.967 18 C 0.006 3.994 19 C -0.521 4.521 20 H 0.075 0.925 21 C 0.073 3.927 22 N -0.894 5.894 23 Si 0.879 3.121 24 H -0.275 1.275 25 H -0.265 1.265 26 H -0.285 1.285 27 C -0.143 4.143 28 C -0.024 4.024 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.097 0.903 34 H 0.055 0.945 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.417 0.583 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.034 0.966 42 H 0.029 0.971 43 H 0.267 0.733 44 H 0.130 0.870 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.528 12.367 -20.142 25.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.149 4.149 3 H 0.105 0.895 4 C -0.012 4.012 5 O -0.300 6.300 6 C -0.015 4.015 7 C -0.220 4.220 8 C 0.047 3.953 9 H 0.113 0.887 10 N -0.870 5.870 11 S 2.788 3.212 12 O -0.952 6.952 13 O -0.955 6.955 14 C -0.790 4.790 15 C -0.039 4.039 16 C -0.161 4.161 17 C 0.032 3.968 18 C -0.031 4.031 19 C -0.559 4.559 20 H 0.093 0.907 21 C -0.130 4.130 22 N -0.531 5.531 23 Si 0.706 3.294 24 H -0.200 1.200 25 H -0.189 1.189 26 H -0.211 1.211 27 C -0.161 4.161 28 C -0.044 4.044 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.115 0.885 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.251 0.749 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.052 0.948 42 H 0.048 0.952 43 H 0.077 0.923 44 H 0.148 0.852 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.180 12.101 -19.732 24.901 hybrid contribution 1.536 -0.074 0.249 1.558 sum -7.644 12.027 -19.483 24.139 Atomic orbital electron populations 1.21774 0.93768 1.02806 1.02274 1.22054 0.97069 1.01127 0.94605 0.89539 1.22670 0.81154 0.99944 0.97382 1.87947 1.20076 1.76402 1.45616 1.22594 0.99625 0.94668 0.84642 1.22850 0.95905 1.03491 0.99727 1.20884 0.93942 0.96101 0.84375 0.88741 1.55647 1.85849 1.18865 1.26601 1.01664 0.74079 0.73318 0.72178 1.93565 1.61149 1.58024 1.82483 1.93576 1.83116 1.60419 1.58376 1.30351 1.23996 1.08277 1.16350 1.20760 0.92228 0.98670 0.92212 1.21220 0.97802 0.95813 1.01267 1.20700 0.95818 0.92030 0.88239 1.18987 0.90562 0.96010 0.97536 1.20815 0.98413 1.29598 1.07040 0.90674 1.24990 0.98871 0.94582 0.94573 1.69889 1.33736 1.31311 1.18212 0.86790 0.84459 0.79105 0.79063 1.20016 1.18934 1.21055 1.21214 0.94922 1.00464 0.99549 1.20754 0.95498 0.92006 0.96113 0.91930 0.92205 0.91951 0.92673 0.88478 0.92656 0.88281 0.90087 0.89422 0.74908 0.85135 0.85246 0.94813 0.95238 0.92339 0.85239 0.85260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.07 37.16 0.34 -0.65 16 2 C -0.13 -0.90 2.54 -90.48 -0.23 -1.13 16 3 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 4 C 0.07 0.46 6.13 37.21 0.23 0.69 16 5 O -0.38 -3.51 10.77 -35.23 -0.38 -3.89 16 6 C 0.06 0.51 6.84 37.20 0.25 0.77 16 7 C -0.18 -1.55 5.75 -26.59 -0.15 -1.70 16 8 C 0.15 1.31 2.29 -67.75 -0.16 1.16 16 9 H 0.09 0.84 7.51 -51.93 -0.39 0.45 16 10 N -1.11 -10.06 4.87 -4.73 -0.02 -10.08 16 11 S 2.69 35.23 5.72 -107.50 -0.61 34.62 16 12 O -0.96 -14.75 16.62 -57.17 -0.95 -15.70 16 13 O -0.96 -15.07 17.28 -57.17 -0.99 -16.06 16 14 C -0.70 -10.24 5.18 -39.58 -0.20 -10.44 16 15 C -0.02 -0.29 9.52 -39.58 -0.38 -0.67 16 16 C -0.14 -2.47 9.70 -39.59 -0.38 -2.86 16 17 C 0.03 0.62 5.07 -104.62 -0.53 0.09 16 18 C 0.01 0.13 4.17 -29.03 -0.12 0.01 16 19 C -0.52 -14.12 9.65 -34.44 -0.33 -14.45 16 20 H 0.08 2.26 7.98 -52.49 -0.42 1.84 16 21 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 22 N -0.89 -26.60 13.96 55.43 0.77 -25.83 16 23 Si 0.88 20.37 27.47 -169.99 -4.67 15.70 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 25 H -0.26 -5.81 6.54 56.52 0.37 -5.44 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 27 C -0.14 -2.43 9.70 -39.58 -0.38 -2.81 16 28 C -0.02 -0.36 8.57 -39.58 -0.34 -0.70 16 29 H 0.06 0.44 7.71 -51.93 -0.40 0.04 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 37 H 0.09 0.84 6.29 -51.93 -0.33 0.52 16 38 H 0.42 2.88 8.84 -34.47 -0.30 2.57 16 39 H 0.13 1.73 7.62 -52.49 -0.40 1.33 16 40 H 0.13 2.13 8.06 -52.49 -0.42 1.71 16 41 H 0.03 0.73 7.14 -51.93 -0.37 0.36 16 42 H 0.03 0.63 7.51 -51.93 -0.39 0.24 16 43 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 45 H 0.13 1.64 7.62 -52.49 -0.40 1.24 16 LS Contribution 374.87 15.07 5.65 5.65 Total: -1.00 -33.65 374.87 -10.49 -44.14 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -6.80 Total: 2.23 kcal Atomic # 6 Polarization: -28.29 SS G_CDS: -2.49 Total: -30.78 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.75 Total: -35.91 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -2.32 Total: -35.64 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.67 Total: 15.70 kcal Atomic # 16 Polarization: 35.23 SS G_CDS: -0.61 Total: 34.62 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.65 -10.49 -44.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885141018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.843 kcal (2) G-P(sol) polarization free energy of solvation -33.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds