Wall clock time and date at job start Tue Mar 31 2020 23:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09000 * 109.57700 * 2 1 4 4 C 1.53089 * 109.52341 * 120.15555 * 2 1 3 5 5 O 1.42906 * 109.41593 * 177.51383 * 4 2 1 6 6 C 1.42903 * 114.09822 * 298.84354 * 5 4 2 7 7 C 1.53089 * 109.41397 * 61.15766 * 6 5 4 8 8 C 1.53180 * 109.52200 * 239.84349 * 2 1 3 9 9 H 1.08997 * 109.61527 * 303.01844 * 8 2 1 10 10 N 1.46496 * 109.54597 * 63.24898 * 8 2 1 11 11 S 1.65602 * 120.00008 * 214.55849 * 10 8 2 12 12 O 1.42103 * 106.40137 * 311.45670 * 11 10 8 13 13 O 1.42098 * 106.40324 * 178.53386 * 11 10 8 14 14 C 1.76199 * 107.21840 * 64.99388 * 11 10 8 15 15 C 1.38237 * 119.99789 * 90.00242 * 14 11 10 16 16 C 1.38235 * 120.00204 * 179.97438 * 15 14 11 17 17 C 1.38238 * 119.99663 * 0.02562 * 16 15 14 18 18 C 1.50706 * 120.00103 * 179.97438 * 17 16 15 19 19 C 1.50698 * 109.47294 * 89.99178 * 18 17 16 20 20 H 1.08005 * 119.99819 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00046 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00192 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99979 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.47261 * 60.00310 * 23 21 19 26 26 H 1.48500 * 109.47454 * 300.00304 * 23 21 19 27 27 C 1.38234 * 120.00173 * 0.24460 * 17 16 15 28 28 C 1.38228 * 120.00293 * 270.02449 * 14 11 10 29 29 H 1.08998 * 109.47282 * 180.15904 * 1 2 3 30 30 H 1.09003 * 109.47480 * 300.15580 * 1 2 3 31 31 H 1.09003 * 109.47297 * 60.15882 * 1 2 3 32 32 H 1.09005 * 109.48166 * 57.53201 * 4 2 1 33 33 H 1.08997 * 109.49353 * 297.50250 * 4 2 1 34 34 H 1.09004 * 109.47938 * 301.17599 * 6 5 4 35 35 H 1.08997 * 109.49269 * 181.14686 * 6 5 4 36 36 H 1.08998 * 109.52157 * 182.48734 * 7 6 5 37 37 H 1.09001 * 109.52516 * 62.29917 * 7 6 5 38 38 H 0.96998 * 120.00193 * 34.55458 * 10 8 2 39 39 H 1.08001 * 120.00254 * 359.97438 * 15 14 11 40 40 H 1.07995 * 120.00679 * 179.97438 * 16 15 14 41 41 H 1.09001 * 109.46953 * 329.99736 * 18 17 16 42 42 H 1.08993 * 109.46894 * 209.99366 * 18 17 16 43 43 H 0.97001 * 119.99934 * 359.97438 * 22 21 19 44 44 H 1.08005 * 120.00155 * 179.72911 * 27 17 16 45 45 H 1.07999 * 120.00174 * 359.97438 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0415 -0.7248 1.2476 5 8 3.4694 -0.7742 1.2163 6 6 4.0043 -1.4816 0.0957 7 6 3.5715 -0.7871 -1.1982 8 6 2.0418 -0.7253 -1.2483 9 1 1.6368 -1.7368 -1.2757 10 7 1.6199 0.0043 -2.4466 11 16 1.2363 -0.8242 -3.8283 12 8 2.2957 -1.7446 -4.0514 13 8 0.8392 0.1502 -4.7833 14 6 -0.1955 -1.7892 -3.4773 15 6 -1.4548 -1.2602 -3.6902 16 6 -2.5781 -2.0174 -3.4153 17 6 -2.4422 -3.3035 -2.9270 18 6 -3.6669 -4.1289 -2.6268 19 6 -4.0619 -4.9069 -3.8555 20 1 -3.4837 -4.8134 -4.7629 21 6 -5.1608 -5.7389 -3.8209 22 7 -5.8646 -5.8532 -2.7158 23 14 -5.6500 -6.7039 -5.3437 24 1 -6.8569 -7.5171 -5.0479 25 1 -4.5344 -7.5995 -5.7418 26 1 -5.9481 -5.7617 -6.4522 27 6 -1.1831 -3.8306 -2.7089 28 6 -0.0596 -3.0751 -2.9886 29 1 -0.3634 -1.0276 0.0029 30 1 -0.3634 0.5163 0.8886 31 1 -0.3634 0.5114 -0.8914 32 1 1.6431 -1.7392 1.2677 33 1 1.7159 -0.1887 2.1390 34 1 3.6315 -2.5059 0.1007 35 1 5.0925 -1.4905 0.1570 36 1 3.9416 -1.3500 -2.0550 37 1 3.9780 0.2240 -1.2224 38 1 1.5651 0.9726 -2.4308 39 1 -1.5610 -0.2552 -4.0712 40 1 -3.5620 -1.6040 -3.5812 41 1 -4.4855 -3.4713 -2.3345 42 1 -3.4483 -4.8207 -1.8134 43 1 -5.6103 -5.3524 -1.9249 44 1 -1.0769 -4.8338 -2.3232 45 1 0.9241 -3.4885 -2.8223 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885141020.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:25 Heat of formation + Delta-G solvation = -120.435611 kcal Electronic energy + Delta-G solvation = -27980.914910 eV Core-core repulsion = 24089.242765 eV Total energy + Delta-G solvation = -3891.672146 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.01221 -38.95351 -37.24134 -36.20286 -35.85307 -34.05267 -33.05675 -31.57963 -31.22583 -30.71799 -27.15661 -27.05331 -24.65489 -23.59934 -22.63651 -22.50387 -21.23506 -20.76687 -19.50452 -17.95396 -17.45655 -17.08058 -16.87913 -16.45579 -15.74887 -15.20872 -15.09752 -14.99912 -14.66726 -14.47165 -14.12323 -13.95759 -13.78096 -13.32605 -13.27637 -13.19944 -12.42285 -12.38702 -12.35078 -12.17507 -12.10030 -12.01019 -11.87741 -11.76146 -11.68440 -11.53174 -11.28438 -10.92896 -10.91325 -10.62004 -10.59416 -10.28260 -10.07434 -9.91484 -9.66704 -9.30710 -8.72134 -8.52952 -8.35805 -6.54986 -4.28039 0.39670 1.19278 1.65504 2.93007 3.36503 3.37079 3.55695 3.56196 3.65140 3.98741 4.18023 4.32363 4.42862 4.43425 4.48050 4.66183 4.81259 4.86927 5.06439 5.08509 5.10694 5.17050 5.22528 5.27806 5.38783 5.43683 5.48907 5.54629 5.56063 5.67179 5.73572 5.76205 5.82253 5.92509 6.04612 6.09883 6.17924 6.36791 6.66708 6.68556 6.72949 6.85620 6.92319 7.24671 7.32133 7.88819 8.24757 8.65477 9.43116 10.84442 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015770 B = 0.003071 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.070482 B = 9115.960115 C = 9908.735419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 H 0.086 0.914 4 C 0.066 3.934 5 O -0.383 6.383 6 C 0.061 3.939 7 C -0.176 4.176 8 C 0.158 3.842 9 H 0.088 0.912 10 N -1.112 6.112 11 S 2.695 3.305 12 O -0.962 6.962 13 O -0.965 6.965 14 C -0.702 4.702 15 C -0.019 4.019 16 C -0.144 4.144 17 C 0.032 3.968 18 C 0.027 3.973 19 C -0.598 4.598 20 H 0.053 0.947 21 C 0.021 3.979 22 N -0.906 5.906 23 Si 1.071 2.929 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.286 1.286 27 C -0.144 4.144 28 C -0.025 4.025 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.055 0.945 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.417 0.583 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.025 0.975 42 H 0.025 0.975 43 H 0.269 0.731 44 H 0.128 0.872 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.904 12.602 7.231 22.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 H 0.105 0.895 4 C -0.012 4.012 5 O -0.301 6.301 6 C -0.016 4.016 7 C -0.215 4.215 8 C 0.051 3.949 9 H 0.106 0.894 10 N -0.870 5.870 11 S 2.788 3.212 12 O -0.952 6.952 13 O -0.956 6.956 14 C -0.791 4.791 15 C -0.039 4.039 16 C -0.163 4.163 17 C 0.032 3.968 18 C -0.010 4.010 19 C -0.636 4.636 20 H 0.071 0.929 21 C -0.184 4.184 22 N -0.541 5.541 23 Si 0.898 3.102 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.212 1.212 27 C -0.163 4.163 28 C -0.045 4.045 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.073 0.927 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.251 0.749 39 H 0.148 0.852 40 H 0.146 0.854 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.080 0.920 44 H 0.146 0.854 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 16.375 11.454 5.973 20.857 hybrid contribution 0.244 1.098 0.669 1.309 sum 16.619 12.551 6.643 21.860 Atomic orbital electron populations 1.21781 0.93509 1.02937 1.02507 1.22084 0.97220 1.01069 0.94619 0.89540 1.22684 0.80922 1.00078 0.97504 1.87938 1.20245 1.76365 1.45572 1.22604 0.99463 0.94785 0.84771 1.22798 0.95795 1.03230 0.99700 1.20825 0.94200 0.95562 0.84316 0.89426 1.55663 1.83895 1.18653 1.28749 1.01679 0.74006 0.73316 0.72217 1.93562 1.53448 1.64477 1.83699 1.93572 1.83881 1.60418 1.57697 1.30332 1.16618 1.10097 1.22072 1.20754 0.91019 0.99030 0.93070 1.21215 0.98567 0.94863 1.01658 1.20865 0.96491 0.92710 0.86761 1.18650 0.89745 0.94259 0.98327 1.21827 1.15629 1.28919 0.97241 0.92909 1.25918 0.93083 0.96473 1.02917 1.70807 1.39999 1.41077 1.02229 0.83507 0.76483 0.76181 0.74018 1.20564 1.21225 1.21234 1.21209 0.91941 1.00262 1.02919 1.20766 0.99193 0.91671 0.92820 0.92004 0.92118 0.91746 0.92609 0.88382 0.92683 0.88386 0.89043 0.90315 0.74904 0.85191 0.85420 0.95662 0.95672 0.92038 0.85437 0.85289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.07 37.15 0.34 -0.87 16 2 C -0.13 -0.99 2.54 -90.49 -0.23 -1.22 16 3 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 4 C 0.07 0.51 6.13 37.20 0.23 0.74 16 5 O -0.38 -3.54 10.77 -35.23 -0.38 -3.92 16 6 C 0.06 0.48 6.84 37.20 0.25 0.74 16 7 C -0.18 -1.48 5.75 -26.59 -0.15 -1.63 16 8 C 0.16 1.40 2.15 -67.75 -0.15 1.25 16 9 H 0.09 0.81 7.24 -51.93 -0.38 0.43 16 10 N -1.11 -10.34 4.87 -4.73 -0.02 -10.37 16 11 S 2.70 35.60 5.65 -107.50 -0.61 34.99 16 12 O -0.96 -14.69 16.61 -57.17 -0.95 -15.64 16 13 O -0.97 -15.15 17.28 -57.17 -0.99 -16.14 16 14 C -0.70 -10.50 5.82 -39.59 -0.23 -10.74 16 15 C -0.02 -0.30 9.52 -39.58 -0.38 -0.68 16 16 C -0.14 -2.61 9.70 -39.58 -0.38 -2.99 16 17 C 0.03 0.65 5.07 -104.62 -0.53 0.12 16 18 C 0.03 0.64 4.42 -29.03 -0.13 0.51 16 19 C -0.60 -16.26 9.09 -34.44 -0.31 -16.57 16 20 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 21 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 22 N -0.91 -26.42 13.65 55.43 0.76 -25.67 16 23 Si 1.07 24.53 29.90 -169.99 -5.08 19.45 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 27 C -0.14 -2.59 9.70 -39.58 -0.38 -2.97 16 28 C -0.03 -0.39 8.90 -39.58 -0.35 -0.74 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.53 7.71 -51.93 -0.40 0.13 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.84 7.71 -51.93 -0.40 0.44 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.42 2.98 8.83 -34.47 -0.30 2.67 16 39 H 0.13 1.76 7.62 -52.49 -0.40 1.36 16 40 H 0.13 2.22 8.06 -52.49 -0.42 1.79 16 41 H 0.03 0.62 7.95 -51.93 -0.41 0.21 16 42 H 0.03 0.62 7.95 -51.93 -0.41 0.20 16 43 H 0.27 7.73 7.22 -40.82 -0.29 7.44 16 44 H 0.13 2.18 8.06 -52.48 -0.42 1.76 16 45 H 0.13 1.69 7.62 -52.49 -0.40 1.29 16 LS Contribution 379.06 15.07 5.71 5.71 Total: -1.00 -33.33 379.06 -10.90 -44.23 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -6.83 Total: 1.93 kcal Atomic # 6 Polarization: -32.07 SS G_CDS: -2.51 Total: -34.58 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.73 Total: -36.03 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -2.32 Total: -35.70 kcal Atomic # 14 Polarization: 24.53 SS G_CDS: -5.08 Total: 19.45 kcal Atomic # 16 Polarization: 35.60 SS G_CDS: -0.61 Total: 34.99 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.33 -10.90 -44.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885141020.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.207 kcal (2) G-P(sol) polarization free energy of solvation -33.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds