Wall clock time and date at job start Tue Mar 31 2020 23:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09000 * 109.57700 * 2 1 4 4 C 1.53089 * 109.52341 * 120.15555 * 2 1 3 5 5 O 1.42906 * 109.41593 * 177.51383 * 4 2 1 6 6 C 1.42903 * 114.09822 * 298.84354 * 5 4 2 7 7 C 1.53089 * 109.41397 * 61.15766 * 6 5 4 8 8 C 1.53180 * 109.52200 * 239.84349 * 2 1 3 9 9 H 1.08997 * 109.61527 * 303.01844 * 8 2 1 10 10 N 1.46496 * 109.54597 * 63.24898 * 8 2 1 11 11 S 1.65602 * 120.00008 * 214.55849 * 10 8 2 12 12 O 1.42103 * 106.40137 * 311.45670 * 11 10 8 13 13 O 1.42098 * 106.40324 * 178.53386 * 11 10 8 14 14 C 1.76199 * 107.21840 * 64.99388 * 11 10 8 15 15 C 1.38237 * 119.99789 * 90.00242 * 14 11 10 16 16 C 1.38235 * 120.00204 * 179.97438 * 15 14 11 17 17 C 1.38238 * 119.99663 * 0.02562 * 16 15 14 18 18 C 1.50706 * 120.00103 * 179.97438 * 17 16 15 19 19 C 1.50698 * 109.47294 * 89.99178 * 18 17 16 20 20 H 1.08005 * 119.99819 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00046 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00192 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99979 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.47261 * 60.00310 * 23 21 19 26 26 H 1.48500 * 109.47454 * 300.00304 * 23 21 19 27 27 C 1.38234 * 120.00173 * 0.24460 * 17 16 15 28 28 C 1.38228 * 120.00293 * 270.02449 * 14 11 10 29 29 H 1.08998 * 109.47282 * 180.15904 * 1 2 3 30 30 H 1.09003 * 109.47480 * 300.15580 * 1 2 3 31 31 H 1.09003 * 109.47297 * 60.15882 * 1 2 3 32 32 H 1.09005 * 109.48166 * 57.53201 * 4 2 1 33 33 H 1.08997 * 109.49353 * 297.50250 * 4 2 1 34 34 H 1.09004 * 109.47938 * 301.17599 * 6 5 4 35 35 H 1.08997 * 109.49269 * 181.14686 * 6 5 4 36 36 H 1.08998 * 109.52157 * 182.48734 * 7 6 5 37 37 H 1.09001 * 109.52516 * 62.29917 * 7 6 5 38 38 H 0.96998 * 120.00193 * 34.55458 * 10 8 2 39 39 H 1.08001 * 120.00254 * 359.97438 * 15 14 11 40 40 H 1.07995 * 120.00679 * 179.97438 * 16 15 14 41 41 H 1.09001 * 109.46953 * 329.99736 * 18 17 16 42 42 H 1.08993 * 109.46894 * 209.99366 * 18 17 16 43 43 H 0.97001 * 119.99934 * 359.97438 * 22 21 19 44 44 H 1.08005 * 120.00155 * 179.72911 * 27 17 16 45 45 H 1.07999 * 120.00174 * 359.97438 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0415 -0.7248 1.2476 5 8 3.4694 -0.7742 1.2163 6 6 4.0043 -1.4816 0.0957 7 6 3.5715 -0.7871 -1.1982 8 6 2.0418 -0.7253 -1.2483 9 1 1.6368 -1.7368 -1.2757 10 7 1.6199 0.0043 -2.4466 11 16 1.2363 -0.8242 -3.8283 12 8 2.2957 -1.7446 -4.0514 13 8 0.8392 0.1502 -4.7833 14 6 -0.1955 -1.7892 -3.4773 15 6 -1.4548 -1.2602 -3.6902 16 6 -2.5781 -2.0174 -3.4153 17 6 -2.4422 -3.3035 -2.9270 18 6 -3.6669 -4.1289 -2.6268 19 6 -4.0619 -4.9069 -3.8555 20 1 -3.4837 -4.8134 -4.7629 21 6 -5.1608 -5.7389 -3.8209 22 7 -5.8646 -5.8532 -2.7158 23 14 -5.6500 -6.7039 -5.3437 24 1 -6.8569 -7.5171 -5.0479 25 1 -4.5344 -7.5995 -5.7418 26 1 -5.9481 -5.7617 -6.4522 27 6 -1.1831 -3.8306 -2.7089 28 6 -0.0596 -3.0751 -2.9886 29 1 -0.3634 -1.0276 0.0029 30 1 -0.3634 0.5163 0.8886 31 1 -0.3634 0.5114 -0.8914 32 1 1.6431 -1.7392 1.2677 33 1 1.7159 -0.1887 2.1390 34 1 3.6315 -2.5059 0.1007 35 1 5.0925 -1.4905 0.1570 36 1 3.9416 -1.3500 -2.0550 37 1 3.9780 0.2240 -1.2224 38 1 1.5651 0.9726 -2.4308 39 1 -1.5610 -0.2552 -4.0712 40 1 -3.5620 -1.6040 -3.5812 41 1 -4.4855 -3.4713 -2.3345 42 1 -3.4483 -4.8207 -1.8134 43 1 -5.6103 -5.3524 -1.9249 44 1 -1.0769 -4.8338 -2.3232 45 1 0.9241 -3.4885 -2.8223 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885141020.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:24 Heat of formation + Delta-G solvation = -142.798406 kcal Electronic energy + Delta-G solvation = -27981.884634 eV Core-core repulsion = 24089.242765 eV Total energy + Delta-G solvation = -3892.641869 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.67734 -40.33501 -38.40065 -37.03771 -36.92504 -35.97893 -33.71902 -33.27824 -32.06615 -31.93931 -28.93110 -27.68194 -25.53024 -25.33666 -23.84327 -23.26507 -22.76011 -21.48142 -20.54821 -19.18895 -18.96469 -18.43076 -17.82925 -17.08508 -16.80750 -16.54916 -16.16295 -15.73312 -15.67925 -15.60389 -15.49705 -15.33346 -15.07688 -14.69294 -14.55548 -13.93942 -13.84945 -13.58464 -13.56119 -13.31088 -13.22038 -13.17904 -13.01854 -12.90102 -12.57268 -12.57030 -12.43799 -12.20930 -12.13933 -11.98041 -11.90785 -11.64938 -11.23901 -11.14991 -10.64057 -10.58569 -10.45929 -10.05324 -9.99334 -8.75214 -6.49480 -0.70290 -0.15892 0.30107 1.50338 1.56818 1.77142 1.91425 2.42106 2.53714 2.73725 2.96839 3.07128 3.24612 3.52461 3.74639 3.77687 3.84374 3.88368 3.99976 4.00567 4.11045 4.28236 4.36329 4.37514 4.48340 4.55390 4.66106 4.69598 4.75230 4.76288 4.82324 4.86912 4.94988 4.95988 5.00170 5.07374 5.12099 5.16992 5.21125 5.27922 5.40707 5.70782 5.76825 5.88021 6.03222 6.06603 6.25378 6.46640 7.29743 8.64101 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015770 B = 0.003071 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.070482 B = 9115.960115 C = 9908.735419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 H 0.098 0.902 4 C 0.062 3.938 5 O -0.396 6.396 6 C 0.058 3.942 7 C -0.173 4.173 8 C 0.150 3.850 9 H 0.084 0.916 10 N -1.094 6.094 11 S 2.722 3.278 12 O -0.977 6.977 13 O -0.985 6.985 14 C -0.697 4.697 15 C -0.015 4.015 16 C -0.154 4.154 17 C 0.001 3.999 18 C 0.033 3.967 19 C -0.610 4.610 20 H 0.045 0.955 21 C -0.029 4.029 22 N -0.930 5.930 23 Si 1.115 2.885 24 H -0.280 1.280 25 H -0.270 1.270 26 H -0.271 1.271 27 C -0.153 4.153 28 C -0.018 4.018 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.111 0.889 34 H 0.057 0.943 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.430 0.570 39 H 0.155 0.845 40 H 0.127 0.873 41 H 0.009 0.991 42 H 0.010 0.990 43 H 0.259 0.741 44 H 0.128 0.872 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.803 13.822 6.816 24.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.141 4.141 3 H 0.116 0.884 4 C -0.015 4.015 5 O -0.315 6.315 6 C -0.019 4.019 7 C -0.213 4.213 8 C 0.043 3.957 9 H 0.102 0.898 10 N -0.856 5.856 11 S 2.812 3.188 12 O -0.967 6.967 13 O -0.976 6.976 14 C -0.784 4.784 15 C -0.034 4.034 16 C -0.173 4.173 17 C 0.001 3.999 18 C -0.004 4.004 19 C -0.647 4.647 20 H 0.063 0.937 21 C -0.227 4.227 22 N -0.567 5.567 23 Si 0.936 3.064 24 H -0.205 1.205 25 H -0.195 1.195 26 H -0.196 1.196 27 C -0.172 4.172 28 C -0.037 4.037 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.129 0.871 34 H 0.076 0.924 35 H 0.129 0.871 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.268 0.732 39 H 0.173 0.827 40 H 0.145 0.855 41 H 0.027 0.973 42 H 0.028 0.972 43 H 0.068 0.932 44 H 0.146 0.854 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 18.267 12.686 5.566 22.926 hybrid contribution -0.219 0.818 0.868 1.212 sum 18.048 13.504 6.434 23.441 Atomic orbital electron populations 1.21797 0.93858 1.02170 1.03067 1.22019 0.96737 1.01479 0.93846 0.88409 1.22792 0.80399 1.00316 0.98027 1.87926 1.20918 1.76577 1.46076 1.22714 1.00320 0.94733 0.84165 1.22772 0.95153 1.03670 0.99682 1.21023 0.94809 0.95574 0.84310 0.89772 1.55295 1.83107 1.19268 1.27927 1.00920 0.72940 0.72586 0.72381 1.93546 1.53488 1.65336 1.84362 1.93545 1.84038 1.60726 1.59251 1.30793 1.17399 1.10165 1.20031 1.20989 0.90425 0.99794 0.92162 1.21256 0.99599 0.94419 1.01976 1.20594 0.95754 0.93621 0.89969 1.18425 0.91264 0.93974 0.96752 1.22158 1.15435 1.29078 0.98049 0.93659 1.27335 0.93228 0.97346 1.04802 1.70920 1.40996 1.42113 1.02682 0.82955 0.76645 0.75546 0.71286 1.20511 1.19547 1.19611 1.21257 0.91921 1.00701 1.03302 1.21011 0.99481 0.91557 0.91650 0.93415 0.90961 0.91885 0.92710 0.87142 0.92427 0.87058 0.89757 0.89550 0.73244 0.82697 0.85525 0.97251 0.97180 0.93162 0.85419 0.82646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.07 71.98 0.65 -1.50 16 2 C -0.12 -1.55 2.54 -10.71 -0.03 -1.57 16 3 H 0.10 1.07 8.14 -2.39 -0.02 1.06 16 4 C 0.06 0.83 6.13 72.01 0.44 1.27 16 5 O -0.40 -6.48 10.77 -148.98 -1.60 -8.09 16 6 C 0.06 0.79 6.84 72.01 0.49 1.28 16 7 C -0.17 -2.49 5.75 30.68 0.18 -2.31 16 8 C 0.15 2.29 2.15 45.11 0.10 2.39 16 9 H 0.08 1.37 7.24 -2.39 -0.02 1.35 16 10 N -1.09 -17.40 4.87 -168.89 -0.82 -18.22 16 11 S 2.72 65.22 5.65 -56.49 -0.32 64.90 16 12 O -0.98 -27.44 16.61 -128.00 -2.13 -29.57 16 13 O -0.99 -28.43 17.28 -128.00 -2.21 -30.64 16 14 C -0.70 -19.55 5.82 22.27 0.13 -19.42 16 15 C -0.01 -0.44 9.52 22.27 0.21 -0.23 16 16 C -0.15 -5.57 9.70 22.27 0.22 -5.36 16 17 C 0.00 0.04 5.07 -19.86 -0.10 -0.06 16 18 C 0.03 1.64 4.42 29.10 0.13 1.77 16 19 C -0.61 -33.99 9.09 25.60 0.23 -33.76 16 20 H 0.05 2.53 7.74 -2.91 -0.02 2.51 16 21 C -0.03 -1.61 5.46 84.65 0.46 -1.15 16 22 N -0.93 -55.74 13.65 21.45 0.29 -55.45 16 23 Si 1.11 49.41 29.90 68.60 2.05 51.46 16 24 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 27 C -0.15 -5.49 9.70 22.27 0.22 -5.27 16 28 C -0.02 -0.53 8.90 22.27 0.20 -0.33 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 0.91 7.71 -2.39 -0.02 0.89 16 32 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.08 1.36 7.71 -2.39 -0.02 1.34 16 37 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.43 4.81 8.83 -96.75 -0.85 3.95 16 39 H 0.16 3.83 7.62 -2.91 -0.02 3.81 16 40 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 41 H 0.01 0.48 7.95 -2.39 -0.02 0.46 16 42 H 0.01 0.52 7.95 -2.39 -0.02 0.50 16 43 H 0.26 15.52 7.22 -92.71 -0.67 14.85 16 44 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 45 H 0.16 3.72 7.62 -2.91 -0.02 3.69 16 Total: -1.00 -71.70 379.06 -0.98 -72.67 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.24 Total: 17.19 kcal Atomic # 6 Polarization: -67.78 SS G_CDS: 3.53 Total: -64.26 kcal Atomic # 7 Polarization: -73.15 SS G_CDS: -0.53 Total: -73.68 kcal Atomic # 8 Polarization: -62.36 SS G_CDS: -5.94 Total: -68.30 kcal Atomic # 14 Polarization: 49.41 SS G_CDS: 2.05 Total: 51.46 kcal Atomic # 16 Polarization: 65.22 SS G_CDS: -0.32 Total: 64.90 kcal Total: -71.70 -0.98 -72.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885141020.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.124 kcal (2) G-P(sol) polarization free energy of solvation -71.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds