Wall clock time and date at job start Tue Mar 31 2020 23:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.70549 * 2 1 4 4 C 1.52765 * 109.51195 * 239.87729 * 2 1 3 5 5 H 1.08994 * 109.56361 * 65.67165 * 4 2 1 6 6 O 1.42902 * 109.38453 * 305.63605 * 4 2 1 7 7 C 1.53039 * 109.38489 * 185.70871 * 4 2 1 8 8 C 1.53047 * 109.53839 * 61.23872 * 7 4 2 9 9 C 1.53191 * 109.31155 * 298.63664 * 8 7 4 10 10 N 1.46926 * 109.58398 * 120.35099 * 2 1 3 11 11 S 1.65597 * 120.63254 * 353.42038 * 10 2 1 12 12 O 1.42102 * 106.40576 * 162.78385 * 11 10 2 13 13 O 1.42102 * 106.40373 * 29.85714 * 11 10 2 14 14 C 1.76206 * 107.21517 * 276.31936 * 11 10 2 15 15 C 1.38236 * 119.99680 * 90.00143 * 14 11 10 16 16 C 1.38237 * 119.99434 * 179.97438 * 15 14 11 17 17 C 1.38238 * 120.00258 * 359.95537 * 16 15 14 18 18 C 1.50696 * 119.99598 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.47215 * 90.00422 * 18 17 16 20 20 H 1.08001 * 120.00205 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99884 * 179.97438 * 19 18 17 22 22 N 1.31523 * 119.99830 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00219 * 359.97438 * 21 19 18 24 24 H 1.48493 * 109.47219 * 90.00411 * 23 21 19 25 25 H 1.48511 * 109.47130 * 210.00305 * 23 21 19 26 26 H 1.48498 * 109.47231 * 329.99623 * 23 21 19 27 27 C 1.38228 * 120.00127 * 0.27493 * 17 16 15 28 28 C 1.38235 * 120.00066 * 269.97415 * 14 11 10 29 29 H 1.09003 * 109.47210 * 292.08527 * 1 2 3 30 30 H 1.09003 * 109.46956 * 52.08197 * 1 2 3 31 31 H 1.09003 * 109.47477 * 172.08380 * 1 2 3 32 32 H 0.96694 * 113.99644 * 180.14290 * 6 4 2 33 33 H 1.08999 * 109.46085 * 301.22046 * 7 4 2 34 34 H 1.08996 * 109.46367 * 181.26128 * 7 4 2 35 35 H 1.09002 * 109.49555 * 178.68417 * 8 7 4 36 36 H 1.08998 * 109.49528 * 58.58819 * 8 7 4 37 37 H 1.09003 * 109.58895 * 294.84293 * 9 8 7 38 38 H 1.09005 * 109.58432 * 174.42082 * 9 8 7 39 39 H 1.07991 * 120.00323 * 359.97235 * 15 14 11 40 40 H 1.08002 * 119.99842 * 179.97438 * 16 15 14 41 41 H 1.08998 * 109.47595 * 329.99871 * 18 17 16 42 42 H 1.09005 * 109.47040 * 209.99763 * 18 17 16 43 43 H 0.96998 * 119.99836 * 179.97438 * 22 21 19 44 44 H 1.07994 * 120.00310 * 179.72855 * 27 17 16 45 45 H 1.08002 * 119.99846 * 0.02562 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0261 0.0000 4 6 2.0402 -0.7226 -1.2455 5 1 1.7633 -0.1568 -2.1349 6 8 1.4583 -2.0263 -1.3092 7 6 3.5638 -0.8463 -1.1725 8 6 3.9522 -1.6687 0.0584 9 6 3.4643 -0.9519 1.3212 10 7 2.0224 -0.6995 1.1945 11 16 0.9716 -1.2000 2.3725 12 8 1.6699 -2.1624 3.1507 13 8 -0.2611 -1.4738 1.7207 14 6 0.6795 0.1783 3.4307 15 6 -0.3600 1.0487 3.1609 16 6 -0.5894 2.1297 3.9914 17 6 0.2200 2.3397 5.0922 18 6 -0.0306 3.5178 5.9979 19 6 -0.9856 3.1160 7.0922 20 1 -1.3727 2.1084 7.1281 21 6 -1.3651 4.0348 8.0476 22 7 -2.1990 3.6842 9.0024 23 14 -0.6950 5.7773 7.9861 24 1 -1.5981 6.6263 7.1683 25 1 -0.6136 6.3254 9.3639 26 1 0.6594 5.7656 7.3773 27 6 1.2623 1.4720 5.3593 28 6 1.4894 0.3888 4.5310 29 1 -0.3634 0.3864 0.9523 30 1 -0.3633 0.6316 -0.8107 31 1 -0.3634 -1.0179 -0.1415 32 1 1.7392 -2.5452 -2.0752 33 1 4.0058 0.1474 -1.0995 34 1 3.9314 -1.3418 -2.0711 35 1 5.0363 -1.7762 0.0968 36 1 3.4904 -2.6542 -0.0020 37 1 3.9928 -0.0049 1.4312 38 1 3.6502 -1.5797 2.1927 39 1 -0.9927 0.8843 2.3014 40 1 -1.4012 2.8100 3.7805 41 1 -0.4629 4.3348 5.4202 42 1 0.9113 3.8436 6.4392 43 1 -2.4657 4.3305 9.6748 44 1 1.8974 1.6385 6.2168 45 1 2.3015 -0.2913 4.7417 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885216774.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:16 Heat of formation + Delta-G solvation = -86.888896 kcal Electronic energy + Delta-G solvation = -28300.361538 eV Core-core repulsion = 24410.144087 eV Total energy + Delta-G solvation = -3890.217451 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.66270 -38.88212 -37.34631 -35.84753 -35.63811 -33.69949 -33.10839 -31.72867 -31.30883 -30.63505 -27.96159 -27.23627 -24.42573 -23.46241 -22.49999 -22.37449 -20.82633 -20.63433 -18.91094 -17.80159 -17.30999 -16.91745 -16.89467 -16.14355 -15.45648 -15.20935 -15.08714 -15.05604 -14.48622 -14.31500 -14.22697 -13.80026 -13.48667 -13.24046 -13.10739 -12.93093 -12.74082 -12.60789 -12.17109 -12.09789 -11.97299 -11.87919 -11.76839 -11.57388 -11.52042 -11.38682 -10.94769 -10.92551 -10.76808 -10.50599 -10.22399 -10.20925 -10.10651 -10.00271 -9.54498 -9.13631 -8.70176 -8.61895 -8.41486 -6.18276 -4.19758 0.51478 1.29944 1.74564 2.99803 3.20105 3.28532 3.29376 3.86722 3.89732 4.09203 4.30668 4.31797 4.39945 4.48019 4.63334 4.76751 4.80201 5.05466 5.09450 5.14242 5.15700 5.20093 5.30542 5.36009 5.41371 5.51419 5.56911 5.62111 5.63038 5.75126 5.83600 5.91613 5.98046 6.03161 6.18052 6.26150 6.41805 6.54332 6.60313 6.71246 6.73411 6.81763 7.30938 7.31104 7.40859 7.54117 8.35077 8.85622 9.39934 10.94309 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.023815 B = 0.002843 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.468419 B = 9848.001540 C = 9894.145260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.163 3.837 3 H 0.085 0.915 4 C 0.097 3.903 5 H 0.065 0.935 6 O -0.552 6.552 7 C -0.151 4.151 8 C -0.127 4.127 9 C 0.116 3.884 10 N -0.988 5.988 11 S 2.696 3.304 12 O -0.967 6.967 13 O -0.952 6.952 14 C -0.702 4.702 15 C -0.029 4.029 16 C -0.143 4.143 17 C 0.029 3.971 18 C 0.006 3.994 19 C -0.520 4.520 20 H 0.075 0.925 21 C 0.072 3.928 22 N -0.894 5.894 23 Si 0.879 3.121 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.265 1.265 27 C -0.142 4.142 28 C -0.023 4.023 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.111 0.889 32 H 0.373 0.627 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.097 0.903 39 H 0.136 0.864 40 H 0.129 0.871 41 H 0.029 0.971 42 H 0.033 0.967 43 H 0.266 0.734 44 H 0.129 0.871 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.249 -7.196 -23.265 27.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.057 3.943 3 H 0.103 0.897 4 C 0.037 3.963 5 H 0.082 0.918 6 O -0.356 6.356 7 C -0.189 4.189 8 C -0.167 4.167 9 C -0.009 4.009 10 N -0.826 5.826 11 S 2.791 3.209 12 O -0.958 6.958 13 O -0.942 6.942 14 C -0.790 4.790 15 C -0.048 4.048 16 C -0.161 4.161 17 C 0.029 3.971 18 C -0.031 4.031 19 C -0.558 4.558 20 H 0.093 0.907 21 C -0.130 4.130 22 N -0.532 5.532 23 Si 0.706 3.294 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.189 1.189 27 C -0.161 4.161 28 C -0.042 4.042 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.129 0.871 32 H 0.219 0.781 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.115 0.885 39 H 0.153 0.847 40 H 0.147 0.853 41 H 0.047 0.953 42 H 0.052 0.948 43 H 0.076 0.924 44 H 0.147 0.853 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 12.515 -7.764 -22.438 26.840 hybrid contribution 0.632 1.597 -0.064 1.719 sum 13.147 -6.166 -22.502 26.781 Atomic orbital electron populations 1.22862 0.92122 1.06571 1.02978 1.20973 0.95624 0.94615 0.83134 0.89737 1.22053 0.91747 0.85130 0.97411 0.91766 1.86633 1.71125 1.27260 1.50627 1.22216 0.96536 1.01419 0.98768 1.21766 1.00714 1.00061 0.94115 1.21471 0.79539 1.00541 0.99390 1.57687 1.17903 1.74276 1.32758 1.01785 0.73144 0.73729 0.72262 1.93510 1.74403 1.57598 1.70275 1.93654 1.43501 1.83961 1.73129 1.30564 1.09055 1.23501 1.15884 1.20922 0.93618 0.92167 0.98059 1.21223 1.00501 0.98714 0.95704 1.20681 0.89824 0.95089 0.91513 1.18977 0.98296 0.91382 0.94403 1.20830 1.26317 0.99958 1.08661 0.90658 1.24990 0.94471 0.98692 0.94895 1.69893 1.33234 1.35412 1.14686 0.86786 0.80128 0.84862 0.77615 1.20035 1.21072 1.18947 1.21212 0.99506 0.95370 1.00050 1.20758 0.96109 0.95572 0.91788 0.91214 0.91829 0.87079 0.78057 0.90832 0.91526 0.90859 0.90665 0.91389 0.88518 0.84700 0.85262 0.95262 0.94838 0.92371 0.85278 0.85260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.10 7.45 37.15 0.28 -1.82 16 2 C 0.16 1.57 3.29 -67.82 -0.22 1.34 16 3 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 4 C 0.10 0.73 3.30 -26.83 -0.09 0.64 16 5 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 6 O -0.55 -4.86 11.46 -35.23 -0.40 -5.27 16 7 C -0.15 -0.91 5.61 -26.69 -0.15 -1.06 16 8 C -0.13 -0.94 5.94 -26.61 -0.16 -1.09 16 9 C 0.12 1.07 6.50 -3.71 -0.02 1.04 16 10 N -0.99 -11.15 3.24 -106.71 -0.35 -11.49 16 11 S 2.70 40.24 5.28 -107.50 -0.57 39.67 16 12 O -0.97 -16.55 15.72 -57.17 -0.90 -17.45 16 13 O -0.95 -15.74 12.52 -57.17 -0.72 -16.45 16 14 C -0.70 -11.37 5.96 -39.58 -0.24 -11.61 16 15 C -0.03 -0.47 8.85 -39.58 -0.35 -0.82 16 16 C -0.14 -2.61 9.70 -39.58 -0.38 -3.00 16 17 C 0.03 0.59 5.07 -104.63 -0.53 0.06 16 18 C 0.01 0.15 4.17 -29.04 -0.12 0.03 16 19 C -0.52 -14.40 9.65 -34.44 -0.33 -14.74 16 20 H 0.08 2.31 7.98 -52.49 -0.42 1.89 16 21 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 22 N -0.89 -26.96 13.96 55.43 0.77 -26.19 16 23 Si 0.88 20.70 27.47 -169.99 -4.67 16.03 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 27 C -0.14 -2.63 9.70 -39.58 -0.38 -3.01 16 28 C -0.02 -0.38 9.52 -39.58 -0.38 -0.76 16 29 H 0.07 0.85 3.01 -51.93 -0.16 0.69 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.11 1.49 5.60 -51.93 -0.29 1.20 16 32 H 0.37 1.69 9.08 45.56 0.41 2.10 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.65 7.61 -51.93 -0.40 0.25 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.10 0.96 6.78 -51.93 -0.35 0.60 16 39 H 0.14 1.90 5.43 -52.49 -0.29 1.62 16 40 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 41 H 0.03 0.64 7.51 -51.93 -0.39 0.25 16 42 H 0.03 0.75 7.14 -51.93 -0.37 0.38 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.13 2.22 8.06 -52.49 -0.42 1.80 16 45 H 0.13 1.85 7.62 -52.49 -0.40 1.45 16 LS Contribution 359.79 15.07 5.42 5.42 Total: -1.00 -34.72 359.79 -10.20 -44.92 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -5.62 Total: 3.66 kcal Atomic # 6 Polarization: -29.67 SS G_CDS: -3.18 Total: -32.85 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.43 Total: -37.68 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -2.02 Total: -39.17 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.67 Total: 16.03 kcal Atomic # 16 Polarization: 40.24 SS G_CDS: -0.57 Total: 39.67 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.72 -10.20 -44.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885216774.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.965 kcal (2) G-P(sol) polarization free energy of solvation -34.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds