Wall clock time and date at job start Tue Mar 31 2020 23:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.70549 * 2 1 4 4 C 1.52765 * 109.51195 * 239.87729 * 2 1 3 5 5 H 1.08994 * 109.56361 * 65.67165 * 4 2 1 6 6 O 1.42902 * 109.38453 * 305.63605 * 4 2 1 7 7 C 1.53039 * 109.38489 * 185.70871 * 4 2 1 8 8 C 1.53047 * 109.53839 * 61.23872 * 7 4 2 9 9 C 1.53191 * 109.31155 * 298.63664 * 8 7 4 10 10 N 1.46926 * 109.58398 * 120.35099 * 2 1 3 11 11 S 1.65597 * 120.63254 * 353.42038 * 10 2 1 12 12 O 1.42102 * 106.40576 * 162.78385 * 11 10 2 13 13 O 1.42102 * 106.40373 * 29.85714 * 11 10 2 14 14 C 1.76206 * 107.21517 * 276.31936 * 11 10 2 15 15 C 1.38236 * 119.99680 * 90.00143 * 14 11 10 16 16 C 1.38237 * 119.99434 * 179.97438 * 15 14 11 17 17 C 1.38238 * 120.00258 * 359.95537 * 16 15 14 18 18 C 1.50696 * 119.99598 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.47215 * 90.00422 * 18 17 16 20 20 H 1.08001 * 120.00205 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99884 * 179.97438 * 19 18 17 22 22 N 1.31523 * 119.99830 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00219 * 359.97438 * 21 19 18 24 24 H 1.48493 * 109.47219 * 90.00411 * 23 21 19 25 25 H 1.48511 * 109.47130 * 210.00305 * 23 21 19 26 26 H 1.48498 * 109.47231 * 329.99623 * 23 21 19 27 27 C 1.38228 * 120.00127 * 0.27493 * 17 16 15 28 28 C 1.38235 * 120.00066 * 269.97415 * 14 11 10 29 29 H 1.09003 * 109.47210 * 292.08527 * 1 2 3 30 30 H 1.09003 * 109.46956 * 52.08197 * 1 2 3 31 31 H 1.09003 * 109.47477 * 172.08380 * 1 2 3 32 32 H 0.96694 * 113.99644 * 180.14290 * 6 4 2 33 33 H 1.08999 * 109.46085 * 301.22046 * 7 4 2 34 34 H 1.08996 * 109.46367 * 181.26128 * 7 4 2 35 35 H 1.09002 * 109.49555 * 178.68417 * 8 7 4 36 36 H 1.08998 * 109.49528 * 58.58819 * 8 7 4 37 37 H 1.09003 * 109.58895 * 294.84293 * 9 8 7 38 38 H 1.09005 * 109.58432 * 174.42082 * 9 8 7 39 39 H 1.07991 * 120.00323 * 359.97235 * 15 14 11 40 40 H 1.08002 * 119.99842 * 179.97438 * 16 15 14 41 41 H 1.08998 * 109.47595 * 329.99871 * 18 17 16 42 42 H 1.09005 * 109.47040 * 209.99763 * 18 17 16 43 43 H 0.96998 * 119.99836 * 179.97438 * 22 21 19 44 44 H 1.07994 * 120.00310 * 179.72855 * 27 17 16 45 45 H 1.08002 * 119.99846 * 0.02562 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0261 0.0000 4 6 2.0402 -0.7226 -1.2455 5 1 1.7633 -0.1568 -2.1349 6 8 1.4583 -2.0263 -1.3092 7 6 3.5638 -0.8463 -1.1725 8 6 3.9522 -1.6687 0.0584 9 6 3.4643 -0.9519 1.3212 10 7 2.0224 -0.6995 1.1945 11 16 0.9716 -1.2000 2.3725 12 8 1.6699 -2.1624 3.1507 13 8 -0.2611 -1.4738 1.7207 14 6 0.6795 0.1783 3.4307 15 6 -0.3600 1.0487 3.1609 16 6 -0.5894 2.1297 3.9914 17 6 0.2200 2.3397 5.0922 18 6 -0.0306 3.5178 5.9979 19 6 -0.9856 3.1160 7.0922 20 1 -1.3727 2.1084 7.1281 21 6 -1.3651 4.0348 8.0476 22 7 -2.1990 3.6842 9.0024 23 14 -0.6950 5.7773 7.9861 24 1 -1.5981 6.6263 7.1683 25 1 -0.6136 6.3254 9.3639 26 1 0.6594 5.7656 7.3773 27 6 1.2623 1.4720 5.3593 28 6 1.4894 0.3888 4.5310 29 1 -0.3634 0.3864 0.9523 30 1 -0.3633 0.6316 -0.8107 31 1 -0.3634 -1.0179 -0.1415 32 1 1.7392 -2.5452 -2.0752 33 1 4.0058 0.1474 -1.0995 34 1 3.9314 -1.3418 -2.0711 35 1 5.0363 -1.7762 0.0968 36 1 3.4904 -2.6542 -0.0020 37 1 3.9928 -0.0049 1.4312 38 1 3.6502 -1.5797 2.1927 39 1 -0.9927 0.8843 2.3014 40 1 -1.4012 2.8100 3.7805 41 1 -0.4629 4.3348 5.4202 42 1 0.9113 3.8436 6.4392 43 1 -2.4657 4.3305 9.6748 44 1 1.8974 1.6385 6.2168 45 1 2.3015 -0.2913 4.7417 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885216774.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:15 Heat of formation + Delta-G solvation = -112.351357 kcal Electronic energy + Delta-G solvation = -28301.465673 eV Core-core repulsion = 24410.144087 eV Total energy + Delta-G solvation = -3891.321586 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.36205 -40.24289 -38.56310 -36.96461 -36.44874 -35.56415 -33.85136 -33.51355 -32.09684 -31.91035 -29.72689 -27.95706 -25.35151 -25.03065 -23.77596 -23.16026 -22.31341 -21.42287 -20.03498 -19.04068 -18.90044 -18.24934 -17.64341 -17.16549 -16.78304 -16.27195 -16.09783 -16.03747 -15.76861 -15.54260 -15.40946 -14.95113 -14.64779 -14.57360 -14.18805 -14.07093 -13.86496 -13.73817 -13.63092 -13.45040 -13.20088 -13.18320 -12.71715 -12.59871 -12.56810 -12.40827 -12.14771 -12.12645 -11.98145 -11.93640 -11.71296 -11.58360 -11.39204 -11.03323 -10.83610 -10.65365 -10.04284 -9.99531 -9.83500 -8.34560 -6.42208 -0.64958 -0.09507 0.35648 1.35673 1.37632 1.49153 1.95891 2.32015 2.57257 2.78553 2.99756 3.27371 3.35023 3.71972 3.82134 3.87366 3.92761 4.02263 4.05950 4.16167 4.17824 4.41599 4.43232 4.47502 4.54924 4.67990 4.73183 4.74622 4.77901 4.87036 4.91263 4.98148 5.02237 5.06449 5.07983 5.14620 5.21504 5.27532 5.32010 5.45016 5.48073 5.67050 5.74206 5.78528 5.91207 6.17954 6.64435 7.04622 7.21778 8.82059 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.023815 B = 0.002843 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.468419 B = 9848.001540 C = 9894.145260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.152 3.848 3 H 0.109 0.891 4 C 0.096 3.904 5 H 0.088 0.912 6 O -0.578 6.578 7 C -0.146 4.146 8 C -0.126 4.126 9 C 0.105 3.895 10 N -0.980 5.980 11 S 2.709 3.291 12 O -0.993 6.993 13 O -0.971 6.971 14 C -0.700 4.700 15 C -0.027 4.027 16 C -0.152 4.152 17 C -0.003 4.003 18 C 0.013 3.987 19 C -0.528 4.528 20 H 0.025 0.975 21 C 0.009 3.991 22 N -0.948 5.948 23 Si 0.955 3.045 24 H -0.263 1.263 25 H -0.284 1.284 26 H -0.241 1.241 27 C -0.152 4.152 28 C -0.025 4.025 29 H 0.055 0.945 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.389 0.611 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.157 0.843 40 H 0.137 0.863 41 H 0.041 0.959 42 H 0.042 0.958 43 H 0.269 0.731 44 H 0.135 0.865 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.641 -5.910 -26.160 31.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.047 3.953 3 H 0.126 0.874 4 C 0.036 3.964 5 H 0.106 0.894 6 O -0.386 6.386 7 C -0.183 4.183 8 C -0.166 4.166 9 C -0.020 4.020 10 N -0.821 5.821 11 S 2.802 3.198 12 O -0.983 6.983 13 O -0.961 6.961 14 C -0.787 4.787 15 C -0.046 4.046 16 C -0.171 4.171 17 C -0.003 4.003 18 C -0.024 4.024 19 C -0.565 4.565 20 H 0.043 0.957 21 C -0.189 4.189 22 N -0.588 5.588 23 Si 0.777 3.223 24 H -0.188 1.188 25 H -0.210 1.210 26 H -0.164 1.164 27 C -0.171 4.171 28 C -0.044 4.044 29 H 0.074 0.926 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.239 0.761 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.076 0.924 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.174 0.826 40 H 0.154 0.846 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.078 0.922 44 H 0.153 0.847 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 14.916 -6.485 -25.348 30.117 hybrid contribution -0.124 1.019 0.730 1.259 sum 14.792 -5.466 -24.618 29.236 Atomic orbital electron populations 1.22810 0.93588 1.05375 1.03073 1.21313 0.94631 0.96093 0.83251 0.87355 1.22146 0.92660 0.84736 0.96899 0.89433 1.86595 1.71826 1.28184 1.51996 1.22202 0.95309 1.02100 0.98731 1.21780 1.01761 0.99189 0.93828 1.21773 0.78222 1.01835 1.00149 1.57453 1.18350 1.74333 1.31947 1.01345 0.73045 0.73159 0.72232 1.93472 1.74846 1.58542 1.71452 1.93649 1.45070 1.84232 1.73164 1.30958 1.08409 1.23393 1.15912 1.21177 0.93745 0.91365 0.98281 1.21378 1.00453 0.99633 0.95620 1.20593 0.91779 0.95416 0.92504 1.18822 0.97204 0.92917 0.93481 1.21070 1.27088 0.97891 1.10499 0.95673 1.26031 0.94639 1.04027 0.94189 1.70064 1.35303 1.37418 1.15999 0.85591 0.80592 0.78192 0.77900 1.18777 1.20962 1.16405 1.21355 0.99393 0.95725 1.00629 1.21008 0.96723 0.95251 0.91417 0.92628 0.89458 0.89589 0.76139 0.89447 0.89556 0.88800 0.92356 0.89131 0.89734 0.82554 0.84560 0.94063 0.94006 0.92183 0.84667 0.83144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.94 7.45 71.98 0.54 -3.40 16 2 C 0.15 2.52 3.29 44.83 0.15 2.67 16 3 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 4 C 0.10 1.13 3.30 30.53 0.10 1.23 16 5 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 6 O -0.58 -9.06 11.46 -148.98 -1.71 -10.76 16 7 C -0.15 -1.16 5.61 30.62 0.17 -0.99 16 8 C -0.13 -1.50 5.94 30.67 0.18 -1.31 16 9 C 0.10 1.68 6.50 86.36 0.56 2.24 16 10 N -0.98 -20.29 3.24 -491.51 -1.59 -21.88 16 11 S 2.71 79.28 5.28 -56.49 -0.30 78.98 16 12 O -0.99 -33.80 15.72 -128.00 -2.01 -35.81 16 13 O -0.97 -32.00 12.52 -128.00 -1.60 -33.60 16 14 C -0.70 -22.26 5.96 22.27 0.13 -22.13 16 15 C -0.03 -0.87 8.85 22.27 0.20 -0.67 16 16 C -0.15 -5.57 9.70 22.27 0.22 -5.35 16 17 C 0.00 -0.11 5.07 -19.87 -0.10 -0.21 16 18 C 0.01 0.59 4.17 29.10 0.12 0.71 16 19 C -0.53 -30.19 9.65 25.60 0.25 -29.94 16 20 H 0.02 1.63 7.98 -2.91 -0.02 1.61 16 21 C 0.01 0.49 5.47 84.65 0.46 0.96 16 22 N -0.95 -59.12 13.96 21.45 0.30 -58.82 16 23 Si 0.96 42.48 27.47 68.60 1.88 44.36 16 24 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 26 H -0.24 -9.70 6.54 99.48 0.65 -9.05 16 27 C -0.15 -5.62 9.70 22.27 0.22 -5.40 16 28 C -0.02 -0.81 9.52 22.27 0.21 -0.60 16 29 H 0.06 1.28 3.01 -2.39 -0.01 1.27 16 30 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.09 2.25 5.60 -2.39 -0.01 2.24 16 32 H 0.39 2.71 9.08 -74.06 -0.67 2.04 16 33 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.06 0.90 7.61 -2.39 -0.02 0.88 16 37 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.08 1.57 6.78 -2.38 -0.02 1.55 16 39 H 0.16 4.29 5.43 -2.92 -0.02 4.28 16 40 H 0.14 4.64 8.06 -2.91 -0.02 4.62 16 41 H 0.04 1.76 7.51 -2.39 -0.02 1.75 16 42 H 0.04 1.82 7.14 -2.38 -0.02 1.80 16 43 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 44 H 0.14 4.66 8.06 -2.91 -0.02 4.64 16 45 H 0.15 4.18 7.62 -2.91 -0.02 4.16 16 Total: -1.00 -78.24 359.79 -1.34 -79.58 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: 0.29 Total: 20.18 kcal Atomic # 6 Polarization: -65.62 SS G_CDS: 3.40 Total: -62.21 kcal Atomic # 7 Polarization: -79.42 SS G_CDS: -1.29 Total: -80.71 kcal Atomic # 8 Polarization: -74.86 SS G_CDS: -5.32 Total: -80.18 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 1.88 Total: 44.36 kcal Atomic # 16 Polarization: 79.28 SS G_CDS: -0.30 Total: 78.98 kcal Total: -78.24 -1.34 -79.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885216774.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.774 kcal (2) G-P(sol) polarization free energy of solvation -78.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds