Wall clock time and date at job start Tue Mar 31 2020 23:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.49731 * 2 1 4 4 C 1.53042 * 109.49407 * 239.94036 * 2 1 3 5 5 C 1.53043 * 109.53647 * 178.65446 * 4 2 1 6 6 H 1.09005 * 109.49391 * 301.40829 * 5 4 2 7 7 O 1.42901 * 109.49866 * 181.31988 * 5 4 2 8 8 C 1.53186 * 109.31619 * 61.36118 * 5 4 2 9 9 N 1.46927 * 108.77719 * 305.36834 * 8 5 4 10 10 S 1.65591 * 120.63120 * 233.58269 * 9 8 5 11 11 O 1.42101 * 106.40500 * 336.45935 * 10 9 8 12 12 O 1.42104 * 106.40278 * 203.54260 * 10 9 8 13 13 C 1.76195 * 107.22084 * 90.00092 * 10 9 8 14 14 C 1.38233 * 120.00186 * 89.99343 * 13 10 9 15 15 C 1.38234 * 120.00037 * 179.72636 * 14 13 10 16 16 C 1.38234 * 120.00240 * 0.26327 * 15 14 13 17 17 C 1.50700 * 120.00260 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.46901 * 90.00181 * 17 16 15 19 19 H 1.07997 * 120.00203 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99744 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00174 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99774 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47073 * 89.99719 * 22 20 18 24 24 H 1.48502 * 109.46688 * 209.99573 * 22 20 18 25 25 H 1.48496 * 109.47355 * 329.99479 * 22 20 18 26 26 C 1.38238 * 119.99693 * 0.02562 * 16 15 14 27 27 C 1.38234 * 120.00047 * 359.95697 * 26 16 15 28 28 C 1.46925 * 118.73393 * 53.85771 * 9 8 5 29 29 H 1.09000 * 109.47063 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47147 * 300.06184 * 1 2 3 31 31 H 1.08997 * 109.47206 * 60.05960 * 1 2 3 32 32 H 1.08996 * 109.46333 * 58.63331 * 4 2 1 33 33 H 1.09005 * 109.45115 * 298.66001 * 4 2 1 34 34 H 0.96702 * 113.99826 * 180.15866 * 7 5 4 35 35 H 1.09001 * 109.59059 * 185.57888 * 8 5 4 36 36 H 1.09002 * 109.69974 * 65.22547 * 8 5 4 37 37 H 1.08002 * 120.00157 * 0.02562 * 14 13 10 38 38 H 1.07999 * 120.00009 * 180.28389 * 15 14 13 39 39 H 1.08999 * 109.47240 * 210.00239 * 17 16 15 40 40 H 1.08999 * 109.46861 * 329.99859 * 17 16 15 41 41 H 0.96995 * 119.99639 * 180.02562 * 21 20 18 42 42 H 1.08001 * 119.99658 * 179.97438 * 26 16 15 43 43 H 1.07999 * 119.99990 * 180.02562 * 27 26 16 44 44 H 1.09006 * 109.59019 * 65.93113 * 28 9 8 45 45 H 1.09000 * 109.58524 * 186.34970 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0407 -0.7226 -1.2487 5 6 3.5708 -0.6940 -1.2667 6 1 3.9154 0.3401 -1.2548 7 8 4.0461 -1.3420 -2.4483 8 6 4.1059 -1.4256 -0.0318 9 7 3.5053 -0.8285 1.1688 10 16 4.4595 -0.2844 2.4080 11 8 5.6883 -0.9911 2.3085 12 8 3.6481 -0.2970 3.5746 13 6 4.8296 1.4063 2.0777 14 6 3.9976 2.4019 2.5544 15 6 4.2912 3.7286 2.3001 16 6 5.4138 4.0594 1.5644 17 6 5.7334 5.5057 1.2866 18 6 6.6057 6.0481 2.3894 19 1 6.8988 5.4095 3.2096 20 6 7.0286 7.3599 2.3517 21 7 6.6712 8.1376 1.3532 22 14 8.1092 8.0324 3.7191 23 1 9.5372 7.8220 3.3702 24 1 7.8492 9.4849 3.8863 25 1 7.8001 7.3250 4.9876 26 6 6.2425 3.0634 1.0826 27 6 5.9492 1.7368 1.3372 28 6 2.0418 -0.7290 1.2516 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5148 0.8894 31 1 -0.3633 0.5129 -0.8905 32 1 1.6577 -0.2241 -2.1390 33 1 1.6972 -1.7571 -1.2354 34 1 5.0098 -1.3631 -2.5247 35 1 5.1902 -1.3230 0.0125 36 1 3.8407 -2.4814 -0.0866 37 1 3.1209 2.1436 3.1298 38 1 3.6436 4.5067 2.6765 39 1 6.2591 5.5853 0.3351 40 1 4.8081 6.0797 1.2396 41 1 6.9691 9.0603 1.3266 42 1 7.1194 3.3219 0.5074 43 1 6.5969 0.9587 0.9611 44 1 1.6095 -1.7286 1.2981 45 1 1.7636 -0.1667 2.1430 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885225537.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:14 Heat of formation + Delta-G solvation = -116.227044 kcal Electronic energy + Delta-G solvation = -27980.377609 eV Core-core repulsion = 24088.887961 eV Total energy + Delta-G solvation = -3891.489649 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.45344 -38.84659 -37.31959 -36.34701 -35.84531 -33.79919 -33.71441 -31.59727 -30.64881 -30.50761 -27.47060 -27.17711 -24.85432 -23.75150 -22.44209 -22.26558 -20.96891 -20.40485 -19.02361 -18.03954 -17.40571 -17.33755 -16.47712 -16.37924 -15.48880 -15.21047 -15.12984 -14.97792 -14.41360 -14.40589 -14.15130 -13.75829 -13.57385 -13.26644 -13.16538 -12.89942 -12.56484 -12.40874 -12.27193 -12.18510 -12.10033 -12.02790 -11.91975 -11.75294 -11.52507 -11.23977 -11.04221 -10.99671 -10.94944 -10.73503 -10.57858 -10.52712 -10.42582 -9.79023 -9.68589 -9.19853 -8.64442 -8.56796 -8.42192 -6.19981 -4.25198 0.36681 1.27458 1.74031 2.84234 3.22330 3.29027 3.33285 3.70814 3.80203 4.05039 4.20528 4.34646 4.43837 4.50445 4.57326 4.66243 4.87533 4.94038 5.06877 5.10893 5.17287 5.17881 5.27780 5.32501 5.41529 5.46477 5.56701 5.66831 5.67336 5.72512 5.76097 5.84366 5.86132 5.97093 6.06510 6.19666 6.25542 6.27741 6.47434 6.78748 6.86111 7.25041 7.33199 7.38526 7.54798 7.75009 8.09910 8.79590 9.40020 10.90032 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015458 B = 0.003077 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.913319 B = 9096.279032 C = 9458.253974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 H 0.082 0.918 4 C -0.104 4.104 5 C 0.089 3.911 6 H 0.065 0.935 7 O -0.564 6.564 8 C 0.092 3.908 9 N -0.996 5.996 10 S 2.694 3.306 11 O -0.962 6.962 12 O -0.960 6.960 13 C -0.704 4.704 14 C -0.023 4.023 15 C -0.144 4.144 16 C 0.027 3.973 17 C 0.039 3.961 18 C -0.518 4.518 19 H 0.059 0.941 20 C 0.061 3.939 21 N -0.891 5.891 22 Si 0.899 3.101 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 C -0.145 4.145 27 C -0.025 4.025 28 C 0.123 3.877 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.381 0.619 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.035 0.965 40 H 0.035 0.965 41 H 0.264 0.736 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.075 0.925 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.175 -18.618 -5.430 21.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 H 0.101 0.899 4 C -0.141 4.141 5 C 0.029 3.971 6 H 0.083 0.917 7 O -0.369 6.369 8 C -0.034 4.034 9 N -0.834 5.834 10 S 2.788 3.212 11 O -0.952 6.952 12 O -0.951 6.951 13 C -0.793 4.793 14 C -0.042 4.042 15 C -0.163 4.163 16 C 0.027 3.973 17 C 0.003 3.997 18 C -0.556 4.556 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.529 5.529 22 Si 0.726 3.274 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.164 4.164 27 C -0.044 4.044 28 C -0.002 4.002 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.228 0.772 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.146 0.854 43 H 0.145 0.855 44 H 0.094 0.906 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.523 -19.037 -4.889 22.295 hybrid contribution 1.310 1.336 0.437 1.922 sum -9.213 -17.701 -4.452 20.446 Atomic orbital electron populations 1.21757 0.93832 1.02215 1.02502 1.21593 0.96358 1.00516 0.94262 0.89929 1.21481 0.92857 1.01686 0.98094 1.22182 0.95556 0.95666 0.83705 0.91717 1.86514 1.27133 1.81219 1.42040 1.22146 0.98572 0.98361 0.84334 1.57770 1.16210 1.75311 1.34112 1.01792 0.72743 0.74007 0.72660 1.93549 1.43740 1.71831 1.86120 1.93553 1.69358 1.87418 1.44725 1.30380 1.07855 1.23131 1.17966 1.20754 0.96589 0.92745 0.94130 1.21247 0.98853 0.95598 1.00614 1.21125 0.89969 0.98749 0.87499 1.18540 0.98056 0.84990 0.98153 1.20966 1.31199 0.96140 1.07341 0.92288 1.25002 0.96195 0.96792 0.96107 1.69944 1.45022 1.07147 1.30827 0.86479 0.80660 0.78144 0.82130 1.20429 1.21002 1.19684 1.21242 1.00615 0.91927 1.02569 1.20739 0.93318 0.97318 0.93046 1.21672 0.78191 1.01550 0.98793 0.92348 0.91938 0.92084 0.90884 0.91045 0.77167 0.88955 0.90160 0.85350 0.85323 0.94727 0.94702 0.92603 0.85354 0.85484 0.90646 0.88683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.20 37.16 0.34 -0.60 16 2 C -0.11 -0.86 2.88 -90.28 -0.26 -1.12 16 3 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.10 -0.86 4.82 -26.69 -0.13 -0.99 16 5 C 0.09 0.79 3.62 -26.61 -0.10 0.69 16 6 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 7 O -0.56 -4.90 13.32 -35.23 -0.47 -5.37 16 8 C 0.09 0.82 6.00 -3.71 -0.02 0.80 16 9 N -1.00 -10.36 3.28 -113.27 -0.37 -10.73 16 10 S 2.69 37.11 5.69 -107.50 -0.61 36.49 16 11 O -0.96 -15.17 16.00 -57.17 -0.92 -16.09 16 12 O -0.96 -15.16 15.99 -57.17 -0.91 -16.08 16 13 C -0.70 -10.77 5.97 -39.58 -0.24 -11.00 16 14 C -0.02 -0.36 9.52 -39.58 -0.38 -0.73 16 15 C -0.14 -2.61 9.70 -39.58 -0.38 -2.99 16 16 C 0.03 0.55 5.07 -104.62 -0.53 0.02 16 17 C 0.04 0.95 5.10 -29.03 -0.15 0.80 16 18 C -0.52 -13.93 9.09 -34.44 -0.31 -14.24 16 19 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -25.31 13.29 55.43 0.74 -24.58 16 22 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 26 C -0.14 -2.61 9.70 -39.58 -0.38 -2.99 16 27 C -0.02 -0.39 9.52 -39.58 -0.38 -0.77 16 28 C 0.12 1.08 5.69 -3.49 -0.02 1.06 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.38 1.87 9.08 45.56 0.41 2.28 16 35 H 0.09 0.79 7.13 -51.93 -0.37 0.42 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.13 1.73 7.62 -52.49 -0.40 1.33 16 38 H 0.13 2.21 8.06 -52.49 -0.42 1.79 16 39 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 40 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 42 H 0.13 2.20 8.06 -52.49 -0.42 1.77 16 43 H 0.13 1.69 7.62 -52.49 -0.40 1.29 16 44 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.09 0.84 7.12 -51.93 -0.37 0.47 16 LS Contribution 379.98 15.07 5.73 5.73 Total: -1.00 -32.94 379.98 -11.03 -43.97 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -6.16 Total: 1.18 kcal Atomic # 6 Polarization: -27.45 SS G_CDS: -3.03 Total: -30.48 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.36 Total: -35.31 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -2.30 Total: -37.53 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 37.11 SS G_CDS: -0.61 Total: 36.49 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.94 -11.03 -43.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885225537.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.256 kcal (2) G-P(sol) polarization free energy of solvation -32.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds