Wall clock time and date at job start Tue Mar 31 2020 23:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09001 * 109.99315 * 2 1 4 4 C 1.54103 * 109.87949 * 121.08228 * 2 1 3 5 5 C 1.54805 * 104.18849 * 121.45550 * 4 2 1 6 6 C 1.54993 * 102.09577 * 20.87938 * 5 4 2 7 7 H 1.09000 * 110.75042 * 81.54071 * 6 5 4 8 8 C 1.52997 * 110.62180 * 204.47702 * 6 5 4 9 9 N 1.46505 * 109.47212 * 180.52266 * 8 6 5 10 10 S 1.65596 * 119.99941 * 164.99768 * 9 8 6 11 11 O 1.42098 * 106.40050 * 178.54251 * 10 9 8 12 12 O 1.42101 * 106.40475 * 311.46396 * 10 9 8 13 13 C 1.76206 * 107.21689 * 65.00216 * 10 9 8 14 14 C 1.38233 * 119.99823 * 269.72575 * 13 10 9 15 15 C 1.38237 * 120.00047 * 179.78714 * 14 13 10 16 16 C 1.38239 * 119.99710 * 0.46647 * 15 14 13 17 17 C 1.50695 * 120.00204 * 179.79044 * 16 15 14 18 18 C 1.50699 * 109.47243 * 269.97777 * 17 16 15 19 19 H 1.08004 * 119.99510 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00217 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00072 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99976 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47080 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46765 * 119.99862 * 22 20 18 25 25 H 1.48494 * 109.47142 * 240.00068 * 22 20 18 26 26 C 1.38236 * 120.00075 * 359.76470 * 16 15 14 27 27 C 1.38230 * 119.99805 * 89.99838 * 13 10 9 28 28 O 1.43741 * 109.88031 * 238.91298 * 2 1 3 29 29 H 1.09003 * 109.47576 * 179.63528 * 1 2 3 30 30 H 1.09002 * 109.47697 * 299.63457 * 1 2 3 31 31 H 1.09004 * 109.47734 * 59.63202 * 1 2 3 32 32 H 1.09007 * 110.48802 * 240.13230 * 4 2 1 33 33 H 1.08998 * 110.48489 * 2.63883 * 4 2 1 34 34 H 1.08996 * 110.90733 * 262.68004 * 5 4 2 35 35 H 1.08999 * 110.90554 * 139.07963 * 5 4 2 36 36 H 1.09002 * 109.47153 * 60.52258 * 8 6 5 37 37 H 1.09001 * 109.46832 * 300.52449 * 8 6 5 38 38 H 0.96997 * 119.99914 * 345.00649 * 9 8 6 39 39 H 1.08002 * 120.00194 * 359.97438 * 14 13 10 40 40 H 1.07992 * 120.00228 * 180.25547 * 15 14 13 41 41 H 1.09000 * 109.47009 * 29.97662 * 17 16 15 42 42 H 1.08998 * 109.47381 * 149.97626 * 17 16 15 43 43 H 0.96997 * 120.00355 * 180.02562 * 21 20 18 44 44 H 1.08000 * 120.00282 * 180.02562 * 26 16 15 45 45 H 1.07992 * 120.00273 * 359.97438 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 6 2.0539 -0.7482 1.2411 5 6 2.9195 -1.8914 0.6577 6 6 3.2379 -1.3642 -0.7646 7 1 4.0690 -0.6595 -0.7382 8 6 3.5474 -2.5245 -1.7126 9 7 3.8565 -1.9980 -3.0444 10 16 4.5842 -2.9698 -4.1705 11 8 4.7155 -2.1883 -5.3500 12 8 5.6873 -3.5836 -3.5181 13 6 3.4505 -4.2630 -4.5541 14 6 3.4751 -5.4407 -3.8308 15 6 2.5827 -6.4536 -4.1289 16 6 1.6723 -6.2924 -5.1565 17 6 0.7027 -7.3984 -5.4846 18 6 1.3160 -8.3163 -6.5104 19 1 2.3085 -8.1183 -6.8874 20 6 0.6100 -9.4088 -6.9676 21 7 -0.5988 -9.6496 -6.5089 22 14 1.3700 -10.5462 -8.2397 23 1 2.7282 -10.0591 -8.5907 24 1 1.4659 -11.9190 -7.6818 25 1 0.5204 -10.5649 -9.4574 26 6 1.6510 -5.1165 -5.8830 27 6 2.5404 -4.1019 -5.5820 28 8 2.0187 -0.6980 -1.1576 29 1 -0.3634 -1.0276 -0.0065 30 1 -0.3634 0.5081 0.8932 31 1 -0.3635 0.5195 -0.8867 32 1 2.6619 -0.0858 1.8575 33 1 1.2244 -1.1527 1.8211 34 1 2.3539 -2.8219 0.6100 35 1 3.8331 -2.0223 1.2376 36 1 2.6818 -3.1840 -1.7745 37 1 4.4037 -3.0835 -1.3351 38 1 3.6349 -1.0801 -3.2664 39 1 4.1893 -5.5684 -3.0309 40 1 2.5991 -7.3721 -3.5611 41 1 0.4766 -7.9635 -4.5803 42 1 -0.2162 -6.9693 -5.8841 43 1 -1.0953 -10.4184 -6.8303 44 1 0.9394 -4.9904 -6.6856 45 1 2.5239 -3.1834 -6.1497 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885230178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:21 Heat of formation + Delta-G solvation = -114.322296 kcal Electronic energy + Delta-G solvation = -26945.242891 eV Core-core repulsion = 23053.835838 eV Total energy + Delta-G solvation = -3891.407052 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.01625 -38.77798 -37.13271 -35.75300 -35.52023 -33.66642 -32.65690 -31.76715 -31.54112 -30.55360 -27.74479 -27.41626 -24.02799 -23.71563 -22.34228 -21.79970 -21.37009 -20.86763 -19.34222 -17.79956 -17.33261 -17.17751 -16.46061 -16.35399 -16.10381 -15.41210 -15.06858 -14.87492 -14.35684 -14.30079 -13.92156 -13.80879 -13.61526 -13.25756 -13.08503 -12.81769 -12.71256 -12.54973 -12.43370 -12.21569 -12.00391 -11.96893 -11.90805 -11.68403 -11.47911 -11.25887 -11.17493 -11.06103 -10.92440 -10.91908 -10.51076 -10.47565 -10.01958 -9.79407 -9.67193 -9.53968 -8.57016 -8.53293 -8.36429 -6.16728 -4.21552 0.53321 1.35372 1.81916 3.03793 3.23581 3.31587 3.36988 3.40854 3.78708 4.10797 4.13866 4.26517 4.38447 4.47898 4.51134 4.63500 4.74742 4.84077 5.01172 5.11035 5.14446 5.17691 5.24508 5.26549 5.31203 5.38780 5.42950 5.55682 5.65157 5.68534 5.74219 5.75773 5.85536 5.86714 5.93298 6.27216 6.35345 6.52863 6.60509 6.85468 6.87032 6.92904 7.30664 7.44987 7.60309 7.78692 8.14049 8.83559 9.43447 10.93369 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014241 B = 0.002667 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.727230 B =10496.481864 C =11614.563832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.071 3.929 3 H 0.067 0.933 4 C -0.152 4.152 5 C -0.150 4.150 6 C 0.071 3.929 7 H 0.080 0.920 8 C 0.124 3.876 9 N -1.116 6.116 10 S 2.699 3.301 11 O -0.965 6.965 12 O -0.966 6.966 13 C -0.703 4.703 14 C -0.026 4.026 15 C -0.146 4.146 16 C 0.026 3.974 17 C 0.039 3.961 18 C -0.516 4.516 19 H 0.059 0.941 20 C 0.060 3.940 21 N -0.892 5.892 22 Si 0.898 3.102 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.146 4.146 27 C -0.020 4.020 28 O -0.366 6.366 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.420 0.580 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.263 0.737 44 H 0.128 0.872 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.016 19.191 16.366 25.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.014 3.986 3 H 0.085 0.915 4 C -0.190 4.190 5 C -0.188 4.188 6 C 0.012 3.988 7 H 0.097 0.903 8 C -0.002 4.002 9 N -0.876 5.876 10 S 2.792 3.208 11 O -0.956 6.956 12 O -0.956 6.956 13 C -0.793 4.793 14 C -0.045 4.045 15 C -0.165 4.165 16 C 0.026 3.974 17 C 0.002 3.998 18 C -0.554 4.554 19 H 0.078 0.922 20 C -0.142 4.142 21 N -0.530 5.530 22 Si 0.725 3.275 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.165 4.165 27 C -0.040 4.040 28 O -0.285 6.285 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.112 0.888 38 H 0.255 0.745 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.073 0.927 44 H 0.146 0.854 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.659 19.002 15.846 25.381 hybrid contribution -0.443 -0.740 -0.577 1.038 sum 5.217 18.262 15.270 24.369 Atomic orbital electron populations 1.21935 0.93607 1.03054 1.02338 1.22727 0.95315 0.95632 0.84948 0.91508 1.23016 1.00308 0.97587 0.98082 1.23138 1.00905 0.99476 0.95326 1.23326 0.88626 0.93774 0.93112 0.90258 1.21373 1.01840 0.95490 0.81509 1.55469 1.81167 1.26036 1.24896 1.01513 0.73689 0.73192 0.72436 1.93567 1.86027 1.69584 1.46405 1.93551 1.48884 1.77412 1.75756 1.30301 1.21426 1.16539 1.11011 1.20774 0.95813 0.91613 0.96339 1.21233 0.96655 0.99070 0.99500 1.21110 0.93012 0.94222 0.89048 1.18540 0.92835 0.90515 0.97888 1.21014 1.02104 1.09191 1.23119 0.92233 1.25005 0.94846 0.97621 0.96704 1.69955 1.11003 1.28678 1.43366 0.86427 0.79476 0.80447 0.81101 1.19563 1.20807 1.20799 1.21249 1.00431 0.93716 1.01058 1.20772 0.91490 0.98734 0.92961 1.88946 1.39188 1.67401 1.32985 0.91694 0.91403 0.91834 0.90666 0.90101 0.89735 0.89688 0.90478 0.88820 0.74540 0.85296 0.85372 0.94721 0.94720 0.92694 0.85362 0.85251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.36 37.15 0.35 -0.68 16 2 C 0.07 0.52 4.06 -26.16 -0.11 0.41 16 3 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 4 C -0.15 -0.86 6.64 -25.20 -0.17 -1.02 16 5 C -0.15 -0.92 6.59 -24.73 -0.16 -1.09 16 6 C 0.07 0.56 3.42 -25.68 -0.09 0.47 16 7 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 8 C 0.12 1.14 5.97 -4.04 -0.02 1.12 16 9 N -1.12 -11.77 5.98 -10.61 -0.06 -11.83 16 10 S 2.70 37.75 5.74 -107.50 -0.62 37.13 16 11 O -0.97 -15.89 17.28 -57.17 -0.99 -16.88 16 12 O -0.97 -15.35 16.75 -57.17 -0.96 -16.31 16 13 C -0.70 -11.22 5.95 -39.59 -0.24 -11.45 16 14 C -0.03 -0.42 9.52 -39.58 -0.38 -0.80 16 15 C -0.15 -2.70 9.70 -39.58 -0.38 -3.09 16 16 C 0.03 0.55 5.07 -104.62 -0.53 0.02 16 17 C 0.04 0.96 5.10 -29.04 -0.15 0.81 16 18 C -0.52 -14.07 9.09 -34.44 -0.31 -14.38 16 19 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -25.61 13.29 55.43 0.74 -24.88 16 22 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 26 C -0.15 -2.76 9.70 -39.58 -0.38 -3.15 16 27 C -0.02 -0.34 9.52 -39.58 -0.38 -0.71 16 28 O -0.37 -3.54 10.81 -35.23 -0.38 -3.92 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.41 7.70 -51.93 -0.40 0.01 16 34 H 0.08 0.54 8.06 -51.93 -0.42 0.12 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 0.76 7.75 -51.93 -0.40 0.36 16 38 H 0.42 3.89 8.60 -34.47 -0.30 3.60 16 39 H 0.13 1.75 7.61 -52.49 -0.40 1.35 16 40 H 0.13 2.24 8.06 -52.49 -0.42 1.82 16 41 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 42 H 0.03 0.89 8.09 -51.93 -0.42 0.47 16 43 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.13 2.31 8.06 -52.49 -0.42 1.89 16 45 H 0.13 1.90 7.62 -52.49 -0.40 1.50 16 LS Contribution 386.66 15.07 5.83 5.83 Total: -1.00 -33.57 386.66 -11.44 -45.01 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -6.92 Total: 1.63 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: -3.05 Total: -31.97 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.67 Total: -36.71 kcal Atomic # 8 Polarization: -34.78 SS G_CDS: -2.33 Total: -37.11 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 37.75 SS G_CDS: -0.62 Total: 37.13 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.57 -11.44 -45.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885230178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.315 kcal (2) G-P(sol) polarization free energy of solvation -33.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds