Wall clock time and date at job start Tue Mar 31 2020 23:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09001 * 109.99315 * 2 1 4 4 C 1.54103 * 109.87949 * 121.08228 * 2 1 3 5 5 C 1.54805 * 104.18849 * 121.45550 * 4 2 1 6 6 C 1.54993 * 102.09577 * 20.87938 * 5 4 2 7 7 H 1.09000 * 110.75042 * 81.54071 * 6 5 4 8 8 C 1.52997 * 110.62180 * 204.47702 * 6 5 4 9 9 N 1.46505 * 109.47212 * 180.52266 * 8 6 5 10 10 S 1.65596 * 119.99941 * 164.99768 * 9 8 6 11 11 O 1.42098 * 106.40050 * 178.54251 * 10 9 8 12 12 O 1.42101 * 106.40475 * 311.46396 * 10 9 8 13 13 C 1.76206 * 107.21689 * 65.00216 * 10 9 8 14 14 C 1.38233 * 119.99823 * 269.72575 * 13 10 9 15 15 C 1.38237 * 120.00047 * 179.78714 * 14 13 10 16 16 C 1.38239 * 119.99710 * 0.46647 * 15 14 13 17 17 C 1.50695 * 120.00204 * 179.79044 * 16 15 14 18 18 C 1.50699 * 109.47243 * 269.97777 * 17 16 15 19 19 H 1.08004 * 119.99510 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00217 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00072 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99976 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47080 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46765 * 119.99862 * 22 20 18 25 25 H 1.48494 * 109.47142 * 240.00068 * 22 20 18 26 26 C 1.38236 * 120.00075 * 359.76470 * 16 15 14 27 27 C 1.38230 * 119.99805 * 89.99838 * 13 10 9 28 28 O 1.43741 * 109.88031 * 238.91298 * 2 1 3 29 29 H 1.09003 * 109.47576 * 179.63528 * 1 2 3 30 30 H 1.09002 * 109.47697 * 299.63457 * 1 2 3 31 31 H 1.09004 * 109.47734 * 59.63202 * 1 2 3 32 32 H 1.09007 * 110.48802 * 240.13230 * 4 2 1 33 33 H 1.08998 * 110.48489 * 2.63883 * 4 2 1 34 34 H 1.08996 * 110.90733 * 262.68004 * 5 4 2 35 35 H 1.08999 * 110.90554 * 139.07963 * 5 4 2 36 36 H 1.09002 * 109.47153 * 60.52258 * 8 6 5 37 37 H 1.09001 * 109.46832 * 300.52449 * 8 6 5 38 38 H 0.96997 * 119.99914 * 345.00649 * 9 8 6 39 39 H 1.08002 * 120.00194 * 359.97438 * 14 13 10 40 40 H 1.07992 * 120.00228 * 180.25547 * 15 14 13 41 41 H 1.09000 * 109.47009 * 29.97662 * 17 16 15 42 42 H 1.08998 * 109.47381 * 149.97626 * 17 16 15 43 43 H 0.96997 * 120.00355 * 180.02562 * 21 20 18 44 44 H 1.08000 * 120.00282 * 180.02562 * 26 16 15 45 45 H 1.07992 * 120.00273 * 359.97438 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 6 2.0539 -0.7482 1.2411 5 6 2.9195 -1.8914 0.6577 6 6 3.2379 -1.3642 -0.7646 7 1 4.0690 -0.6595 -0.7382 8 6 3.5474 -2.5245 -1.7126 9 7 3.8565 -1.9980 -3.0444 10 16 4.5842 -2.9698 -4.1705 11 8 4.7155 -2.1883 -5.3500 12 8 5.6873 -3.5836 -3.5181 13 6 3.4505 -4.2630 -4.5541 14 6 3.4751 -5.4407 -3.8308 15 6 2.5827 -6.4536 -4.1289 16 6 1.6723 -6.2924 -5.1565 17 6 0.7027 -7.3984 -5.4846 18 6 1.3160 -8.3163 -6.5104 19 1 2.3085 -8.1183 -6.8874 20 6 0.6100 -9.4088 -6.9676 21 7 -0.5988 -9.6496 -6.5089 22 14 1.3700 -10.5462 -8.2397 23 1 2.7282 -10.0591 -8.5907 24 1 1.4659 -11.9190 -7.6818 25 1 0.5204 -10.5649 -9.4574 26 6 1.6510 -5.1165 -5.8830 27 6 2.5404 -4.1019 -5.5820 28 8 2.0187 -0.6980 -1.1576 29 1 -0.3634 -1.0276 -0.0065 30 1 -0.3634 0.5081 0.8932 31 1 -0.3635 0.5195 -0.8867 32 1 2.6619 -0.0858 1.8575 33 1 1.2244 -1.1527 1.8211 34 1 2.3539 -2.8219 0.6100 35 1 3.8331 -2.0223 1.2376 36 1 2.6818 -3.1840 -1.7745 37 1 4.4037 -3.0835 -1.3351 38 1 3.6349 -1.0801 -3.2664 39 1 4.1893 -5.5684 -3.0309 40 1 2.5991 -7.3721 -3.5611 41 1 0.4766 -7.9635 -4.5803 42 1 -0.2162 -6.9693 -5.8841 43 1 -1.0953 -10.4184 -6.8303 44 1 0.9394 -4.9904 -6.6856 45 1 2.5239 -3.1834 -6.1497 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885230178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:20 Heat of formation + Delta-G solvation = -136.792039 kcal Electronic energy + Delta-G solvation = -26946.217252 eV Core-core repulsion = 23053.835838 eV Total energy + Delta-G solvation = -3892.381414 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.58116 -40.22760 -38.35474 -36.97912 -36.32639 -35.59849 -33.32173 -33.19689 -32.36160 -31.95888 -29.24916 -28.38412 -25.59879 -24.61303 -23.72809 -22.52647 -22.35631 -21.87950 -20.45855 -18.98398 -18.59990 -18.41164 -17.80258 -17.25082 -16.86828 -16.69737 -16.47888 -15.98161 -15.85264 -15.33502 -15.24245 -14.65651 -14.46077 -14.40378 -14.32490 -13.94192 -13.84304 -13.54590 -13.41759 -13.37865 -13.23456 -13.17260 -13.07317 -13.04130 -12.69176 -12.65877 -12.50121 -12.15690 -12.04087 -11.88620 -11.71637 -11.64930 -11.49201 -11.43908 -10.66471 -10.61739 -10.50053 -9.95985 -9.94786 -8.27785 -6.40489 -0.62308 -0.05968 0.40098 1.36868 1.38252 1.51113 1.99432 2.34373 2.56217 2.77961 2.87395 3.04843 3.30358 3.60895 3.78102 3.89226 3.97906 4.04120 4.06717 4.12193 4.15950 4.29833 4.46546 4.48116 4.48846 4.55994 4.60690 4.73185 4.81639 4.83904 4.91196 4.98318 4.99743 5.10702 5.12444 5.18460 5.24370 5.24718 5.25602 5.33446 5.34124 5.66665 5.86030 5.92575 6.02927 6.08923 6.09527 6.71485 7.28668 8.82575 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014241 B = 0.002667 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.727230 B =10496.481864 C =11614.563832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.063 3.937 3 H 0.075 0.925 4 C -0.148 4.148 5 C -0.149 4.149 6 C 0.069 3.931 7 H 0.091 0.909 8 C 0.114 3.886 9 N -1.102 6.102 10 S 2.729 3.271 11 O -0.987 6.987 12 O -0.979 6.979 13 C -0.701 4.701 14 C -0.019 4.019 15 C -0.154 4.154 16 C -0.004 4.004 17 C 0.048 3.952 18 C -0.533 4.533 19 H 0.053 0.947 20 C 0.009 3.991 21 N -0.925 5.925 22 Si 0.965 3.035 23 H -0.268 1.268 24 H -0.274 1.274 25 H -0.275 1.275 26 C -0.157 4.157 27 C -0.020 4.020 28 O -0.392 6.392 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.428 0.572 39 H 0.161 0.839 40 H 0.132 0.868 41 H 0.015 0.985 42 H 0.012 0.988 43 H 0.267 0.733 44 H 0.127 0.873 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.820 20.397 17.513 27.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.006 3.994 3 H 0.092 0.908 4 C -0.186 4.186 5 C -0.188 4.188 6 C 0.010 3.990 7 H 0.109 0.891 8 C -0.012 4.012 9 N -0.865 5.865 10 S 2.819 3.181 11 O -0.977 6.977 12 O -0.968 6.968 13 C -0.788 4.788 14 C -0.038 4.038 15 C -0.173 4.173 16 C -0.004 4.004 17 C 0.011 3.989 18 C -0.570 4.570 19 H 0.072 0.928 20 C -0.190 4.190 21 N -0.565 5.565 22 Si 0.789 3.211 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.201 1.201 26 C -0.176 4.176 27 C -0.039 4.039 28 O -0.312 6.312 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.071 0.929 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.122 0.878 36 H 0.091 0.909 37 H 0.126 0.874 38 H 0.265 0.735 39 H 0.178 0.822 40 H 0.150 0.850 41 H 0.033 0.967 42 H 0.030 0.970 43 H 0.076 0.924 44 H 0.145 0.855 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 7.447 20.199 16.989 27.424 hybrid contribution -0.993 -0.985 -0.844 1.633 sum 6.454 19.214 16.146 25.914 Atomic orbital electron populations 1.21950 0.93723 1.02423 1.02791 1.22908 0.95352 0.96097 0.85073 0.90756 1.23017 1.00581 0.97488 0.97487 1.23171 1.01789 0.99349 0.94453 1.23418 0.88541 0.93514 0.93527 0.89077 1.21642 1.02371 0.96341 0.80866 1.55168 1.80778 1.25792 1.24742 1.00686 0.72986 0.72398 0.72075 1.93537 1.86290 1.69752 1.48150 1.93535 1.49438 1.77912 1.75957 1.30800 1.20735 1.17291 1.09987 1.21074 0.95315 0.90708 0.96694 1.21319 0.96789 1.00128 0.99040 1.20823 0.93977 0.94110 0.91487 1.18264 0.92981 0.91318 0.96308 1.21313 1.01951 1.09995 1.23781 0.92843 1.25869 0.95250 0.99184 0.98675 1.70059 1.12274 1.29449 1.44709 0.85398 0.78639 0.78456 0.78587 1.19225 1.19938 1.20074 1.21297 1.01306 0.93842 1.01143 1.21007 0.90848 0.98832 0.93246 1.88917 1.39981 1.67891 1.34460 0.92795 0.89540 0.92851 0.89052 0.89682 0.90223 0.87841 0.90888 0.87359 0.73523 0.82191 0.84992 0.96713 0.97014 0.92364 0.85458 0.83023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.36 71.98 0.67 -1.24 16 2 C 0.06 0.81 4.06 30.96 0.13 0.93 16 3 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 4 C -0.15 -1.31 6.64 31.58 0.21 -1.10 16 5 C -0.15 -1.46 6.59 31.89 0.21 -1.25 16 6 C 0.07 0.93 3.42 31.28 0.11 1.03 16 7 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 8 C 0.11 1.82 5.97 86.38 0.52 2.33 16 9 N -1.10 -20.67 5.98 -187.48 -1.12 -21.79 16 10 S 2.73 70.02 5.74 -56.49 -0.32 69.70 16 11 O -0.99 -30.43 17.28 -128.00 -2.21 -32.64 16 12 O -0.98 -28.39 16.75 -128.00 -2.14 -30.53 16 13 C -0.70 -21.19 5.95 22.27 0.13 -21.05 16 14 C -0.02 -0.58 9.52 22.27 0.21 -0.37 16 15 C -0.15 -5.72 9.70 22.27 0.22 -5.50 16 16 C 0.00 -0.16 5.07 -19.87 -0.10 -0.26 16 17 C 0.05 2.50 5.10 29.10 0.15 2.65 16 18 C -0.53 -29.90 9.09 25.60 0.23 -29.67 16 19 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 20 C 0.01 0.51 5.46 84.65 0.46 0.98 16 21 N -0.93 -54.48 13.29 21.45 0.28 -54.20 16 22 Si 0.96 43.88 29.54 68.60 2.03 45.91 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 25 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 26 C -0.16 -6.05 9.70 22.27 0.22 -5.84 16 27 C -0.02 -0.66 9.52 22.27 0.21 -0.45 16 28 O -0.39 -7.00 10.81 -148.98 -1.61 -8.61 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.08 0.69 7.70 -2.39 -0.02 0.67 16 34 H 0.08 0.86 8.06 -2.39 -0.02 0.84 16 35 H 0.10 0.63 8.14 -2.39 -0.02 0.62 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.11 1.43 7.75 -2.39 -0.02 1.42 16 38 H 0.43 6.98 8.60 -96.75 -0.83 6.15 16 39 H 0.16 3.89 7.61 -2.91 -0.02 3.87 16 40 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 41 H 0.01 0.79 8.09 -2.39 -0.02 0.77 16 42 H 0.01 0.64 8.09 -2.39 -0.02 0.62 16 43 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 44 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 45 H 0.15 4.22 7.62 -2.91 -0.02 4.19 16 Total: -1.00 -72.42 386.66 -1.37 -73.79 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.15 Total: 17.19 kcal Atomic # 6 Polarization: -62.39 SS G_CDS: 3.57 Total: -58.81 kcal Atomic # 7 Polarization: -75.15 SS G_CDS: -0.84 Total: -75.99 kcal Atomic # 8 Polarization: -65.82 SS G_CDS: -5.97 Total: -71.78 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: 70.02 SS G_CDS: -0.32 Total: 69.70 kcal Total: -72.42 -1.37 -73.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885230178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.000 kcal (2) G-P(sol) polarization free energy of solvation -72.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds