Wall clock time and date at job start Tue Mar 31 2020 23:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.89886 * 2 1 4 4 C 1.54376 * 109.83083 * 239.06042 * 2 1 3 5 5 C 1.55302 * 102.25673 * 219.13037 * 4 2 1 6 6 C 1.54953 * 100.94014 * 34.13501 * 5 4 2 7 7 H 1.09001 * 110.30587 * 82.56931 * 6 5 4 8 8 C 1.52992 * 110.30871 * 204.64086 * 6 5 4 9 9 N 1.46503 * 109.47156 * 185.00121 * 8 6 5 10 10 S 1.65599 * 120.00459 * 164.99749 * 9 8 6 11 11 O 1.42097 * 106.40228 * 311.46264 * 10 9 8 12 12 O 1.42092 * 106.40526 * 178.53674 * 10 9 8 13 13 C 1.76206 * 107.21309 * 64.99819 * 10 9 8 14 14 C 1.38229 * 120.00152 * 270.27602 * 13 10 9 15 15 C 1.38238 * 120.00124 * 180.28709 * 14 13 10 16 16 C 1.38234 * 119.99675 * 359.45911 * 15 14 13 17 17 C 1.50703 * 120.00257 * 180.27927 * 16 15 14 18 18 C 1.50706 * 109.46982 * 90.00130 * 17 16 15 19 19 H 1.08002 * 119.99611 * 0.02562 * 18 17 16 20 20 C 1.37868 * 120.00068 * 180.02562 * 18 17 16 21 21 N 1.31519 * 119.99987 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00212 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46927 * 59.99901 * 22 20 18 24 24 H 1.48496 * 109.47287 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47040 * 300.00125 * 22 20 18 26 26 C 1.38234 * 120.00240 * 0.26327 * 16 15 14 27 27 C 1.38234 * 119.99835 * 90.00307 * 13 10 9 28 28 O 1.43238 * 109.82785 * 120.93062 * 2 1 3 29 29 H 1.08997 * 109.47212 * 180.93605 * 1 2 3 30 30 H 1.08996 * 109.47069 * 300.93950 * 1 2 3 31 31 H 1.09003 * 109.46927 * 60.93604 * 1 2 3 32 32 H 1.08999 * 110.84711 * 100.93924 * 4 2 1 33 33 H 1.09004 * 110.85155 * 337.32325 * 4 2 1 34 34 H 1.08992 * 111.12870 * 276.21695 * 5 4 2 35 35 H 1.09001 * 111.16081 * 152.06690 * 5 4 2 36 36 H 1.08997 * 109.47321 * 64.99788 * 8 6 5 37 37 H 1.09005 * 109.47168 * 304.99390 * 8 6 5 38 38 H 0.97001 * 119.99540 * 345.00143 * 9 8 6 39 39 H 1.08004 * 120.00244 * 0.02562 * 14 13 10 40 40 H 1.08002 * 120.00519 * 179.74530 * 15 14 13 41 41 H 1.08988 * 109.47584 * 210.00457 * 17 16 15 42 42 H 1.09000 * 109.47013 * 330.00974 * 17 16 15 43 43 H 0.97006 * 119.99533 * 179.97438 * 21 20 18 44 44 H 1.07997 * 120.00460 * 180.02562 * 26 16 15 45 45 H 1.08001 * 120.00274 * 359.97438 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0249 0.0000 4 6 2.0537 -0.7466 -1.2456 5 6 3.2730 -1.5222 -0.6766 6 6 2.7747 -1.8444 0.7548 7 1 2.1414 -2.7316 0.7441 8 6 3.9625 -2.0521 1.6964 9 7 3.4748 -2.4719 3.0125 10 16 4.5242 -3.1236 4.1153 11 8 5.2638 -4.1211 3.4246 12 8 3.7626 -3.3909 5.2847 13 6 5.6752 -1.8617 4.5488 14 6 6.8430 -1.7129 3.8244 15 6 7.7487 -0.7267 4.1681 16 6 7.4812 0.1177 5.2294 17 6 8.4656 1.1969 5.6003 18 6 8.1384 2.4575 4.8420 19 1 7.3011 2.4754 4.1601 20 6 8.9078 3.5877 5.0189 21 7 9.9277 3.5656 5.8489 22 14 8.5018 5.1505 4.0795 23 1 7.1278 5.5939 4.4269 24 1 9.4726 6.2135 4.4440 25 1 8.5826 4.8861 2.6205 26 6 6.3107 -0.0274 5.9503 27 6 5.4076 -1.0171 5.6098 28 8 2.0159 -0.6926 1.1558 29 1 -0.3633 -1.0275 0.0168 30 1 -0.3633 0.5283 0.8814 31 1 -0.3633 0.4992 -0.8983 32 1 2.3672 -0.0427 -2.0165 33 1 1.3012 -1.4351 -1.6302 34 1 4.1620 -0.8922 -0.6505 35 1 3.4578 -2.4350 -1.2430 36 1 4.5158 -1.1182 1.7948 37 1 4.6184 -2.8219 1.2896 38 1 2.5371 -2.3681 3.2379 39 1 7.0498 -2.3697 2.9924 40 1 8.6630 -0.6130 3.6047 41 1 8.4056 1.3910 6.6711 42 1 9.4743 0.8715 5.3460 43 1 10.4693 4.3608 5.9730 44 1 6.1016 0.6325 6.7792 45 1 4.4929 -1.1303 6.1729 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885230179.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:24 Heat of formation + Delta-G solvation = -136.952323 kcal Electronic energy + Delta-G solvation = -27124.265448 eV Core-core repulsion = 23231.877084 eV Total energy + Delta-G solvation = -3892.388364 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.62155 -40.22961 -38.34800 -36.97496 -36.32415 -35.59125 -33.31801 -33.19096 -32.36683 -31.96057 -29.24514 -28.39679 -25.59300 -24.67436 -23.72495 -22.58766 -22.42049 -21.62408 -20.47148 -19.00153 -18.57078 -18.46877 -18.03081 -17.23169 -16.88537 -16.76184 -16.33393 -15.98475 -15.64444 -15.25414 -15.23864 -14.65175 -14.55424 -14.45588 -14.30198 -13.98743 -13.85303 -13.51289 -13.43480 -13.41428 -13.27820 -13.19361 -13.14917 -12.80139 -12.64994 -12.63947 -12.59379 -12.13568 -12.03941 -11.86996 -11.69659 -11.68445 -11.66986 -11.44648 -10.64851 -10.55616 -10.42637 -9.96159 -9.94815 -8.26308 -6.39673 -0.61453 -0.05715 0.39977 1.38846 1.40921 1.49407 1.99673 2.35020 2.56242 2.77133 2.86427 3.06283 3.30799 3.56360 3.78265 3.89674 3.91518 3.97366 4.11506 4.15750 4.19096 4.30604 4.45473 4.47416 4.48659 4.55914 4.58752 4.78490 4.81177 4.84338 4.90913 4.95642 4.96150 5.08652 5.10546 5.16712 5.24242 5.25692 5.28114 5.33460 5.38112 5.67019 5.85822 5.92477 6.04838 6.09632 6.17892 6.72011 7.29474 8.83855 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008939 B = 0.003495 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3131.443400 B = 8010.016840 C =10271.162607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.063 3.937 3 H 0.072 0.928 4 C -0.144 4.144 5 C -0.151 4.151 6 C 0.073 3.927 7 H 0.091 0.909 8 C 0.109 3.891 9 N -1.103 6.103 10 S 2.729 3.271 11 O -0.978 6.978 12 O -0.986 6.986 13 C -0.701 4.701 14 C -0.018 4.018 15 C -0.154 4.154 16 C -0.004 4.004 17 C 0.048 3.952 18 C -0.532 4.532 19 H 0.057 0.943 20 C 0.008 3.992 21 N -0.928 5.928 22 Si 0.966 3.034 23 H -0.269 1.269 24 H -0.280 1.280 25 H -0.265 1.265 26 C -0.157 4.157 27 C -0.020 4.020 28 O -0.396 6.396 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.107 0.893 36 H 0.069 0.931 37 H 0.108 0.892 38 H 0.428 0.572 39 H 0.160 0.840 40 H 0.132 0.868 41 H 0.010 0.990 42 H 0.013 0.987 43 H 0.267 0.733 44 H 0.127 0.873 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.597 -11.433 -15.531 26.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.006 3.994 3 H 0.090 0.910 4 C -0.182 4.182 5 C -0.189 4.189 6 C 0.014 3.986 7 H 0.109 0.891 8 C -0.017 4.017 9 N -0.865 5.865 10 S 2.819 3.181 11 O -0.968 6.968 12 O -0.977 6.977 13 C -0.788 4.788 14 C -0.038 4.038 15 C -0.173 4.173 16 C -0.004 4.004 17 C 0.011 3.989 18 C -0.570 4.570 19 H 0.075 0.925 20 C -0.191 4.191 21 N -0.567 5.567 22 Si 0.790 3.210 23 H -0.194 1.194 24 H -0.206 1.206 25 H -0.190 1.190 26 C -0.176 4.176 27 C -0.039 4.039 28 O -0.316 6.316 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.126 0.874 36 H 0.087 0.913 37 H 0.126 0.874 38 H 0.264 0.736 39 H 0.178 0.822 40 H 0.150 0.850 41 H 0.028 0.972 42 H 0.031 0.969 43 H 0.076 0.924 44 H 0.145 0.855 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -17.311 -12.139 -14.972 25.907 hybrid contribution 0.319 1.962 0.116 1.991 sum -16.992 -10.177 -14.856 24.759 Atomic orbital electron populations 1.22116 0.94197 1.02680 1.02600 1.22904 0.94969 0.96322 0.85218 0.91002 1.23179 0.97715 0.99918 0.97371 1.23328 0.98992 1.02562 0.94043 1.23257 0.91851 0.89934 0.93581 0.89112 1.21744 0.96960 1.01361 0.81666 1.55187 1.22788 1.82110 1.26441 1.00669 0.72397 0.72925 0.72073 1.93533 1.73145 1.55594 1.74494 1.93535 1.70795 1.84394 1.48931 1.30814 1.15649 1.22873 1.09491 1.21069 0.90846 0.94919 0.96916 1.21316 1.01227 0.96508 0.98247 1.20819 0.94699 0.92492 0.92380 1.18265 0.92816 0.91618 0.96220 1.21254 1.14215 0.96029 1.25515 0.92470 1.25906 0.94601 1.02444 0.96140 1.70067 1.18771 1.30688 1.37183 0.85484 0.78241 0.78116 0.79154 1.19361 1.20559 1.19025 1.21291 0.94763 0.99741 1.01798 1.21008 0.98534 0.91100 0.93275 1.88463 1.70825 1.40773 1.31554 0.91986 0.93045 0.90029 0.88824 0.89112 0.89970 0.87420 0.91271 0.87392 0.73568 0.82207 0.85023 0.97198 0.96916 0.92403 0.85490 0.83019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.44 71.98 0.68 -1.29 16 2 C 0.06 0.94 4.16 31.06 0.13 1.07 16 3 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 4 C -0.14 -1.41 6.54 31.85 0.21 -1.20 16 5 C -0.15 -1.61 6.57 32.05 0.21 -1.40 16 6 C 0.07 1.07 3.50 31.26 0.11 1.18 16 7 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 8 C 0.11 1.88 5.93 86.38 0.51 2.39 16 9 N -1.10 -21.60 6.00 -187.49 -1.12 -22.73 16 10 S 2.73 69.99 5.74 -56.49 -0.32 69.66 16 11 O -0.98 -28.06 16.76 -128.00 -2.15 -30.20 16 12 O -0.99 -30.07 17.28 -128.00 -2.21 -32.28 16 13 C -0.70 -21.20 5.95 22.27 0.13 -21.06 16 14 C -0.02 -0.57 9.52 22.27 0.21 -0.36 16 15 C -0.15 -5.74 9.70 22.27 0.22 -5.52 16 16 C 0.00 -0.15 5.07 -19.87 -0.10 -0.25 16 17 C 0.05 2.48 5.10 29.10 0.15 2.63 16 18 C -0.53 -29.48 9.09 25.60 0.23 -29.25 16 19 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 20 C 0.01 0.44 5.46 84.65 0.46 0.90 16 21 N -0.93 -54.64 13.29 21.44 0.28 -54.36 16 22 Si 0.97 43.02 29.54 68.60 2.03 45.05 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 24 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 26 C -0.16 -6.06 9.70 22.27 0.22 -5.85 16 27 C -0.02 -0.66 9.52 22.27 0.21 -0.44 16 28 O -0.40 -7.72 10.70 -148.98 -1.59 -9.32 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.09 0.67 7.85 -2.39 -0.02 0.65 16 34 H 0.08 0.95 8.06 -2.39 -0.02 0.93 16 35 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.11 1.54 7.75 -2.38 -0.02 1.52 16 38 H 0.43 7.33 8.65 -96.74 -0.84 6.50 16 39 H 0.16 3.88 7.62 -2.91 -0.02 3.86 16 40 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 41 H 0.01 0.54 8.08 -2.39 -0.02 0.52 16 42 H 0.01 0.69 8.09 -2.39 -0.02 0.67 16 43 H 0.27 14.79 8.31 -92.70 -0.77 14.02 16 44 H 0.13 4.78 8.06 -2.91 -0.02 4.75 16 45 H 0.15 4.22 7.62 -2.91 -0.02 4.20 16 Total: -1.00 -71.78 386.90 -1.36 -73.14 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.15 Total: 19.49 kcal Atomic # 6 Polarization: -62.03 SS G_CDS: 3.58 Total: -58.45 kcal Atomic # 7 Polarization: -76.24 SS G_CDS: -0.84 Total: -77.08 kcal Atomic # 8 Polarization: -65.85 SS G_CDS: -5.95 Total: -71.80 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: 69.99 SS G_CDS: -0.32 Total: 69.66 kcal Total: -71.78 -1.36 -73.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885230179.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.816 kcal (2) G-P(sol) polarization free energy of solvation -71.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds