Wall clock time and date at job start Tue Mar 31 2020 23:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.54901 * 2 1 4 4 C 1.55000 * 110.62033 * 237.12241 * 2 1 3 5 5 C 1.54812 * 102.09025 * 204.47594 * 4 2 1 6 6 C 1.54097 * 104.18980 * 20.87840 * 5 4 2 7 7 H 1.08999 * 109.88013 * 242.45720 * 6 5 4 8 8 C 1.52996 * 109.87611 * 121.45728 * 6 5 4 9 9 N 1.46500 * 109.46863 * 180.02562 * 8 6 5 10 10 S 1.65606 * 120.00055 * 165.00064 * 9 8 6 11 11 O 1.42105 * 106.40008 * 311.45637 * 10 9 8 12 12 O 1.42098 * 106.40370 * 178.53822 * 10 9 8 13 13 C 1.76193 * 107.21910 * 64.99793 * 10 9 8 14 14 C 1.38241 * 119.99935 * 269.73003 * 13 10 9 15 15 C 1.38234 * 119.99662 * 179.76824 * 14 13 10 16 16 C 1.38234 * 120.00382 * 0.48009 * 15 14 13 17 17 C 1.50697 * 120.00086 * 179.77025 * 16 15 14 18 18 C 1.50707 * 109.47105 * 270.02442 * 17 16 15 19 19 H 1.07995 * 119.99973 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99756 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99860 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99659 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46950 * 90.00495 * 22 20 18 24 24 H 1.48500 * 109.47258 * 210.00271 * 22 20 18 25 25 H 1.48499 * 109.47147 * 330.00278 * 22 20 18 26 26 C 1.38229 * 119.99772 * 359.79515 * 16 15 14 27 27 C 1.38232 * 120.00400 * 90.00069 * 13 10 9 28 28 O 1.43741 * 107.29289 * 2.02862 * 6 5 4 29 29 H 1.09006 * 109.46662 * 182.87798 * 1 2 3 30 30 H 1.08991 * 109.47444 * 302.87633 * 1 2 3 31 31 H 1.09002 * 109.47483 * 62.88155 * 1 2 3 32 32 H 1.08998 * 110.90285 * 86.27460 * 4 2 1 33 33 H 1.08998 * 110.90612 * 322.67444 * 4 2 1 34 34 H 1.09006 * 110.48555 * 262.20174 * 5 4 2 35 35 H 1.08993 * 110.60016 * 139.61796 * 5 4 2 36 36 H 1.08996 * 109.47186 * 60.00393 * 8 6 5 37 37 H 1.09002 * 109.47149 * 299.99601 * 8 6 5 38 38 H 0.97002 * 120.00335 * 345.00104 * 9 8 6 39 39 H 1.08001 * 120.00131 * 359.97438 * 14 13 10 40 40 H 1.08011 * 119.99579 * 180.25003 * 15 14 13 41 41 H 1.08998 * 109.47009 * 30.02054 * 17 16 15 42 42 H 1.08997 * 109.47374 * 150.02480 * 17 16 15 43 43 H 0.97002 * 119.99219 * 179.97438 * 21 20 18 44 44 H 1.07997 * 120.00106 * 179.97438 * 26 16 15 45 45 H 1.07999 * 119.99964 * 0.02562 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0207 0.0000 4 6 2.0758 -0.7875 -1.2183 5 6 3.4795 -1.2156 -0.7253 6 6 3.3839 -1.1266 0.8102 7 1 4.0872 -0.3818 1.1828 8 6 3.6936 -2.4904 1.4306 9 7 3.5996 -2.3958 2.8895 10 16 3.5155 -3.7733 3.8048 11 8 2.5162 -4.5899 3.2100 12 8 3.4689 -3.3517 5.1610 13 6 5.0426 -4.6285 3.6019 14 6 5.1836 -5.5611 2.5913 15 6 6.3832 -6.2285 2.4291 16 6 7.4387 -5.9706 3.2837 17 6 8.7448 -6.7019 3.1101 18 6 8.7230 -7.9694 3.9251 19 1 7.8508 -8.2200 4.5105 20 6 9.8167 -8.8091 3.9232 21 7 10.8790 -8.5036 3.2107 22 14 9.7899 -10.3797 4.9339 23 1 9.2484 -11.4898 4.1094 24 1 11.1705 -10.7131 5.3674 25 1 8.9295 -10.1851 6.1285 26 6 7.2959 -5.0421 4.2978 27 6 6.0980 -4.3709 4.4567 28 8 2.0384 -0.7369 1.1326 29 1 -0.3633 -1.0265 0.0516 30 1 -0.3634 0.5578 0.8630 31 1 -0.3634 0.4684 -0.9147 32 1 2.1509 -0.1444 -2.0952 33 1 1.4550 -1.6584 -1.4284 34 1 4.2407 -0.5314 -1.1005 35 1 3.6999 -2.2370 -1.0353 36 1 4.7013 -2.7967 1.1501 37 1 2.9758 -3.2261 1.0676 38 1 3.5867 -1.5264 3.3194 39 1 4.3575 -5.7659 1.9264 40 1 6.4946 -6.9542 1.6370 41 1 8.8858 -6.9490 2.0579 42 1 9.5643 -6.0672 3.4473 43 1 11.6485 -9.0942 3.2097 44 1 8.1204 -4.8409 4.9657 45 1 5.9864 -3.6458 5.2493 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885230180.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:28 Heat of formation + Delta-G solvation = -136.616483 kcal Electronic energy + Delta-G solvation = -26864.000473 eV Core-core repulsion = 22971.626672 eV Total energy + Delta-G solvation = -3892.373801 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.58184 -40.23251 -38.34957 -36.97207 -36.28970 -35.59300 -33.31976 -33.15099 -32.41282 -31.95924 -29.24356 -28.39010 -25.59340 -24.59683 -23.71665 -22.49649 -22.26065 -21.98929 -20.47219 -19.03239 -18.59379 -18.42050 -17.78350 -17.16797 -16.87068 -16.70502 -16.43405 -15.97705 -15.80357 -15.28605 -15.14704 -14.73509 -14.63279 -14.44716 -14.33767 -13.95503 -13.77449 -13.56386 -13.40784 -13.38698 -13.22054 -13.15797 -13.12748 -12.79150 -12.68026 -12.65485 -12.52333 -12.15024 -12.03523 -11.92617 -11.72252 -11.67609 -11.50120 -11.41941 -10.65452 -10.60833 -10.47147 -9.96166 -9.95114 -8.27406 -6.39792 -0.62840 -0.06807 0.39988 1.38153 1.38575 1.49959 2.02361 2.34733 2.57069 2.76551 2.91743 3.05320 3.31324 3.62851 3.74725 3.88874 3.98319 3.99152 4.06495 4.16267 4.25993 4.32179 4.40232 4.47989 4.48781 4.57279 4.62648 4.72021 4.81472 4.85557 4.91872 5.00005 5.00444 5.11206 5.11404 5.18954 5.25315 5.26543 5.26725 5.32576 5.33651 5.67158 5.86586 5.92437 6.02498 6.09989 6.12931 6.72000 7.29173 8.82591 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020924 B = 0.002387 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.836194 B =11725.248185 C =12432.524326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.061 3.939 3 H 0.080 0.920 4 C -0.148 4.148 5 C -0.152 4.152 6 C 0.070 3.930 7 H 0.088 0.912 8 C 0.109 3.891 9 N -1.100 6.100 10 S 2.726 3.274 11 O -0.985 6.985 12 O -0.988 6.988 13 C -0.699 4.699 14 C -0.019 4.019 15 C -0.153 4.153 16 C -0.003 4.003 17 C 0.048 3.952 18 C -0.533 4.533 19 H 0.053 0.947 20 C 0.009 3.991 21 N -0.925 5.925 22 Si 0.963 3.037 23 H -0.271 1.271 24 H -0.278 1.278 25 H -0.269 1.269 26 C -0.155 4.155 27 C -0.018 4.018 28 O -0.391 6.391 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.428 0.572 39 H 0.157 0.843 40 H 0.132 0.868 41 H 0.015 0.985 42 H 0.013 0.987 43 H 0.267 0.733 44 H 0.129 0.871 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.025 19.514 -9.747 27.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.004 3.996 3 H 0.097 0.903 4 C -0.186 4.186 5 C -0.190 4.190 6 C 0.011 3.989 7 H 0.106 0.894 8 C -0.017 4.017 9 N -0.863 5.863 10 S 2.816 3.184 11 O -0.975 6.975 12 O -0.978 6.978 13 C -0.786 4.786 14 C -0.038 4.038 15 C -0.171 4.171 16 C -0.003 4.003 17 C 0.012 3.988 18 C -0.571 4.571 19 H 0.071 0.929 20 C -0.190 4.190 21 N -0.564 5.564 22 Si 0.788 3.212 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.193 1.193 26 C -0.174 4.174 27 C -0.038 4.038 28 O -0.311 6.311 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.093 0.907 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.099 0.901 38 H 0.265 0.735 39 H 0.174 0.826 40 H 0.150 0.850 41 H 0.033 0.967 42 H 0.032 0.968 43 H 0.076 0.924 44 H 0.147 0.853 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -17.670 18.964 -9.177 27.497 hybrid contribution 1.396 -0.824 0.336 1.656 sum -16.274 18.140 -8.840 25.924 Atomic orbital electron populations 1.21801 0.92942 1.02569 1.03135 1.23351 0.95627 0.95703 0.84916 0.90252 1.23196 0.95800 1.00994 0.98618 1.23003 0.98669 1.04387 0.92949 1.23011 0.85204 0.95048 0.95669 0.89372 1.21833 1.02957 0.98813 0.78119 1.55087 1.91695 1.23190 1.16340 1.00708 0.73085 0.72588 0.71998 1.93530 1.56303 1.69105 1.78519 1.93531 1.87305 1.82196 1.34787 1.30741 1.22150 1.17192 1.08557 1.21045 0.97058 0.91377 0.94355 1.21309 0.93205 1.01456 1.01171 1.20828 0.96601 0.90909 0.91993 1.18263 0.89620 0.94150 0.96813 1.21288 1.01217 1.06001 1.28585 0.92875 1.25857 0.94911 1.01586 0.96631 1.70052 1.05645 1.39075 1.41629 0.85469 0.77622 0.79140 0.78989 1.19624 1.20328 1.19339 1.21305 0.98823 0.98188 0.99099 1.21015 0.90816 0.96362 0.95569 1.88935 1.28095 1.73782 1.40300 0.92763 0.92396 0.89221 0.88334 0.90724 0.88542 0.89348 0.88596 0.90091 0.73546 0.82577 0.85024 0.96667 0.96838 0.92382 0.85276 0.82822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.65 71.98 0.69 -0.98 16 2 C 0.06 0.75 3.98 31.28 0.12 0.88 16 3 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 4 C -0.15 -1.40 6.59 31.90 0.21 -1.19 16 5 C -0.15 -1.46 6.64 31.58 0.21 -1.25 16 6 C 0.07 0.96 3.51 30.96 0.11 1.07 16 7 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 8 C 0.11 1.78 5.70 86.38 0.49 2.27 16 9 N -1.10 -21.20 5.91 -187.50 -1.11 -22.31 16 10 S 2.73 72.73 5.74 -56.49 -0.32 72.41 16 11 O -0.98 -31.12 16.75 -128.00 -2.14 -33.26 16 12 O -0.99 -31.18 17.28 -128.00 -2.21 -33.40 16 13 C -0.70 -20.74 5.95 22.27 0.13 -20.60 16 14 C -0.02 -0.59 9.52 22.27 0.21 -0.38 16 15 C -0.15 -5.55 9.70 22.27 0.22 -5.33 16 16 C 0.00 -0.13 5.07 -19.87 -0.10 -0.23 16 17 C 0.05 2.46 5.10 29.10 0.15 2.61 16 18 C -0.53 -29.58 9.09 25.60 0.23 -29.34 16 19 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 20 C 0.01 0.51 5.46 84.66 0.46 0.97 16 21 N -0.92 -53.93 13.29 21.45 0.28 -53.65 16 22 Si 0.96 43.59 29.54 68.60 2.03 45.62 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 26 C -0.16 -5.77 9.70 22.27 0.22 -5.55 16 27 C -0.02 -0.58 9.52 22.27 0.21 -0.37 16 28 O -0.39 -7.03 10.80 -148.98 -1.61 -8.64 16 29 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.07 0.79 8.06 -2.39 -0.02 0.77 16 34 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.09 0.80 7.70 -2.39 -0.02 0.78 16 36 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.08 1.44 7.75 -2.39 -0.02 1.42 16 38 H 0.43 6.83 8.65 -96.74 -0.84 5.99 16 39 H 0.16 3.89 7.61 -2.91 -0.02 3.87 16 40 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 41 H 0.02 0.80 8.09 -2.39 -0.02 0.78 16 42 H 0.01 0.72 8.09 -2.39 -0.02 0.70 16 43 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 44 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 45 H 0.15 4.04 7.62 -2.91 -0.02 4.02 16 Total: -1.00 -72.68 386.67 -1.37 -74.04 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.15 Total: 16.60 kcal Atomic # 6 Polarization: -61.00 SS G_CDS: 3.57 Total: -57.43 kcal Atomic # 7 Polarization: -75.13 SS G_CDS: -0.82 Total: -75.96 kcal Atomic # 8 Polarization: -69.33 SS G_CDS: -5.96 Total: -75.29 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: 72.73 SS G_CDS: -0.32 Total: 72.41 kcal Total: -72.68 -1.37 -74.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885230180.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.572 kcal (2) G-P(sol) polarization free energy of solvation -72.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds