Wall clock time and date at job start Tue Mar 31 2020 23:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.70395 * 2 1 4 4 C 1.53196 * 109.59147 * 239.64637 * 2 1 3 5 5 C 1.53045 * 109.30876 * 294.84704 * 4 2 1 6 6 C 1.53043 * 109.54002 * 298.63389 * 5 4 2 7 7 H 1.09004 * 109.49285 * 301.41209 * 6 5 4 8 8 O 1.42898 * 109.49748 * 181.35170 * 6 5 4 9 9 C 1.52760 * 109.38191 * 61.24068 * 6 5 4 10 10 N 1.46924 * 109.58951 * 120.35573 * 2 1 3 11 11 S 1.65600 * 120.63075 * 246.15890 * 10 2 1 12 12 O 1.42091 * 106.40293 * 336.45847 * 11 10 2 13 13 O 1.42105 * 106.40393 * 203.53390 * 11 10 2 14 14 C 1.76199 * 107.21792 * 89.99729 * 11 10 2 15 15 C 1.38238 * 120.00464 * 90.00030 * 14 11 10 16 16 C 1.38233 * 120.00443 * 180.02562 * 15 14 11 17 17 C 1.38231 * 119.99939 * 0.02562 * 16 15 14 18 18 C 1.50696 * 120.00100 * 179.97438 * 17 16 15 19 19 C 1.50706 * 109.47259 * 89.99885 * 18 17 16 20 20 H 1.08005 * 119.99758 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00102 * 180.02562 * 19 18 17 22 22 N 1.31516 * 120.00217 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47057 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.47389 * 300.00068 * 23 21 19 26 26 H 1.48504 * 109.47102 * 60.00417 * 23 21 19 27 27 C 1.38242 * 120.00142 * 0.25275 * 17 16 15 28 28 C 1.38231 * 119.99375 * 359.48998 * 27 17 16 29 29 H 1.08995 * 109.47289 * 299.64172 * 1 2 3 30 30 H 1.09003 * 109.47187 * 59.64486 * 1 2 3 31 31 H 1.09001 * 109.47052 * 179.64136 * 1 2 3 32 32 H 1.08993 * 109.49665 * 54.79450 * 4 2 1 33 33 H 1.08994 * 109.49949 * 174.89708 * 4 2 1 34 34 H 1.09003 * 109.46137 * 58.65572 * 5 4 2 35 35 H 1.09000 * 109.45885 * 178.60957 * 5 4 2 36 36 H 0.96700 * 114.00313 * 59.99600 * 8 6 5 37 37 H 1.08999 * 109.50467 * 185.71087 * 9 6 5 38 38 H 1.08997 * 109.43573 * 65.42693 * 9 6 5 39 39 H 1.08005 * 119.99832 * 359.97438 * 15 14 11 40 40 H 1.08005 * 120.00126 * 179.97438 * 16 15 14 41 41 H 1.09001 * 109.47545 * 330.00225 * 18 17 16 42 42 H 1.09006 * 109.47511 * 209.99890 * 18 17 16 43 43 H 0.97001 * 119.99646 * 359.97438 * 22 21 19 44 44 H 1.07995 * 120.00242 * 179.73168 * 27 17 16 45 45 H 1.08006 * 119.99887 * 180.23251 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7293 -1.2454 5 6 1.6415 -2.2041 -1.1701 6 6 2.2801 -2.8464 0.0635 7 1 3.3640 -2.7474 0.0053 8 8 1.9297 -4.2308 0.1158 9 6 1.7740 -2.1421 1.3211 10 7 2.0226 -0.6995 1.1944 11 16 2.8481 0.1210 2.3724 12 8 3.3992 1.2724 1.7482 13 8 3.6353 -0.8439 3.0570 14 6 1.6577 0.7057 3.5325 15 6 1.3038 -0.0785 4.6145 16 6 0.3696 0.3799 5.5244 17 6 -0.2112 1.6225 5.3520 18 6 -1.2301 2.1221 6.3436 19 6 -0.5316 2.8804 7.4427 20 1 0.5428 2.9900 7.4248 21 6 -1.2639 3.4343 8.4712 22 7 -2.5721 3.3004 8.4933 23 14 -0.3980 4.3737 9.8339 24 1 -1.4020 4.8662 10.8110 25 1 0.5631 3.4745 10.5216 26 1 0.3333 5.5279 9.2522 27 6 0.1385 2.4044 4.2669 28 6 1.0766 1.9480 3.3600 29 1 -0.3633 0.5082 0.8931 30 1 -0.3634 0.5193 -0.8868 31 1 -0.3633 -1.0277 -0.0064 32 1 1.6076 -0.2785 -2.1368 33 1 3.1297 -0.6503 -1.2913 34 1 0.5566 -2.2815 -1.0994 35 1 1.9844 -2.7202 -2.0669 36 1 2.2207 -4.7395 -0.6534 37 1 2.3025 -2.5288 2.1924 38 1 0.7043 -2.3204 1.4310 39 1 1.7566 -1.0499 4.7485 40 1 0.0928 -0.2330 6.3695 41 1 -1.7669 1.2751 6.7710 42 1 -1.9355 2.7819 5.8385 43 1 -3.0216 2.8123 7.7859 44 1 -0.3185 3.3732 4.1299 45 1 1.3526 2.5605 2.5142 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885248704.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:37 Heat of formation + Delta-G solvation = -115.370183 kcal Electronic energy + Delta-G solvation = -27943.481947 eV Core-core repulsion = 24052.029455 eV Total energy + Delta-G solvation = -3891.452492 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.67969 -38.89933 -37.34681 -36.54401 -35.85643 -34.01661 -32.67426 -31.54866 -31.29132 -30.65873 -27.67708 -27.10663 -24.38855 -23.54800 -22.93547 -22.39720 -21.16032 -20.46827 -18.77790 -18.11769 -17.54345 -17.43683 -16.91944 -16.07967 -15.40946 -15.13722 -15.01865 -14.88324 -14.52153 -14.38333 -14.06242 -13.77608 -13.64074 -13.37346 -13.28437 -13.19215 -12.57493 -12.53549 -12.32511 -12.25433 -12.07992 -12.05412 -11.91553 -11.80576 -11.64581 -11.30697 -11.02741 -10.94825 -10.87779 -10.87163 -10.57303 -10.26223 -10.19416 -10.02495 -9.32686 -9.24323 -8.66857 -8.50263 -8.31083 -6.52339 -4.25130 0.34238 1.24662 1.71157 2.80864 3.38265 3.39062 3.58109 3.65157 3.81479 4.01165 4.22990 4.33263 4.44339 4.45246 4.54758 4.70851 4.83292 4.86911 5.00236 5.08444 5.15992 5.20161 5.24442 5.28325 5.44490 5.46923 5.55768 5.56580 5.59443 5.64341 5.73237 5.77876 5.81213 5.93574 6.09406 6.15138 6.23112 6.31529 6.45017 6.71764 6.74069 6.96139 7.24921 7.29835 7.36382 7.92062 8.27651 8.68298 9.46035 10.87130 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021810 B = 0.002747 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.514028 B =10192.045707 C =10274.502166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 H 0.106 0.894 4 C -0.123 4.123 5 C -0.152 4.152 6 C 0.095 3.905 7 H 0.060 0.940 8 O -0.564 6.564 9 C 0.125 3.875 10 N -0.992 5.992 11 S 2.695 3.305 12 O -0.960 6.960 13 O -0.960 6.960 14 C -0.702 4.702 15 C -0.021 4.021 16 C -0.145 4.145 17 C 0.031 3.969 18 C 0.027 3.973 19 C -0.598 4.598 20 H 0.053 0.947 21 C 0.020 3.980 22 N -0.906 5.906 23 Si 1.071 2.929 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.286 1.286 27 C -0.145 4.145 28 C -0.022 4.022 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.381 0.619 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.025 0.975 42 H 0.025 0.975 43 H 0.269 0.731 44 H 0.128 0.872 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.308 -11.340 -21.890 25.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.035 3.965 3 H 0.124 0.876 4 C -0.162 4.162 5 C -0.189 4.189 6 C 0.034 3.966 7 H 0.078 0.922 8 O -0.369 6.369 9 C 0.000 4.000 10 N -0.830 5.830 11 S 2.790 3.210 12 O -0.951 6.951 13 O -0.951 6.951 14 C -0.791 4.791 15 C -0.041 4.041 16 C -0.164 4.164 17 C 0.031 3.969 18 C -0.010 4.010 19 C -0.636 4.636 20 H 0.071 0.929 21 C -0.184 4.184 22 N -0.542 5.542 23 Si 0.898 3.102 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.212 1.212 27 C -0.164 4.164 28 C -0.041 4.041 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.228 0.772 37 H 0.119 0.881 38 H 0.097 0.903 39 H 0.148 0.852 40 H 0.146 0.854 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.080 0.920 44 H 0.146 0.854 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 7.700 -10.208 -19.880 23.637 hybrid contribution -0.208 -0.864 -1.644 1.869 sum 7.492 -11.072 -21.523 25.337 Atomic orbital electron populations 1.22219 0.94649 1.02947 1.02849 1.21097 0.94837 0.96640 0.83916 0.87634 1.21845 1.01757 0.95025 0.97597 1.22275 1.02358 0.96266 0.98042 1.21951 0.98179 0.81226 0.95213 0.92165 1.86469 1.82710 1.19889 1.47834 1.21048 1.02467 0.78415 0.98097 1.57852 1.74947 1.16382 1.33839 1.01694 0.73631 0.72956 0.72675 1.93544 1.75763 1.49907 1.75851 1.93553 1.66091 1.61462 1.73951 1.30379 1.24950 1.06565 1.17212 1.20765 0.93696 0.97856 0.91736 1.21213 0.98312 0.97115 0.99715 1.20859 0.92757 0.91315 0.91975 1.18649 0.92843 0.96612 0.92874 1.21833 0.95158 1.37839 1.08729 0.92906 1.25920 0.95878 0.96691 0.99936 1.70805 1.08556 1.39526 1.35291 0.83506 0.75022 0.76132 0.75513 1.20573 1.21223 1.21242 1.21205 0.99323 1.00544 0.95325 1.20743 0.92695 0.92694 0.97973 0.91658 0.91339 0.91715 0.90138 0.91134 0.90430 0.91485 0.77197 0.88065 0.90296 0.85205 0.85398 0.95655 0.95672 0.92029 0.85429 0.85259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 9.03 37.16 0.34 -1.01 16 2 C 0.14 1.24 3.25 -67.60 -0.22 1.02 16 3 H 0.11 0.97 6.92 -51.93 -0.36 0.61 16 4 C -0.12 -0.84 5.55 -26.61 -0.15 -0.99 16 5 C -0.15 -0.97 5.30 -26.69 -0.14 -1.11 16 6 C 0.09 0.78 3.60 -26.83 -0.10 0.68 16 7 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 8 O -0.56 -4.56 13.32 -35.23 -0.47 -5.03 16 9 C 0.13 1.25 5.69 -3.93 -0.02 1.23 16 10 N -0.99 -10.62 3.00 -106.72 -0.32 -10.94 16 11 S 2.70 38.03 5.73 -107.50 -0.62 37.42 16 12 O -0.96 -15.19 15.87 -57.17 -0.91 -16.09 16 13 O -0.96 -15.58 15.87 -57.17 -0.91 -16.49 16 14 C -0.70 -11.14 5.97 -39.58 -0.24 -11.38 16 15 C -0.02 -0.35 9.52 -39.58 -0.38 -0.73 16 16 C -0.14 -2.73 9.70 -39.59 -0.38 -3.11 16 17 C 0.03 0.66 5.07 -104.63 -0.53 0.13 16 18 C 0.03 0.66 4.42 -29.03 -0.13 0.53 16 19 C -0.60 -16.50 9.09 -34.44 -0.31 -16.82 16 20 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 21 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 22 N -0.91 -26.77 13.65 55.43 0.76 -26.01 16 23 Si 1.07 24.82 29.90 -169.99 -5.08 19.73 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 25 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 27 C -0.15 -2.71 9.70 -39.58 -0.38 -3.09 16 28 C -0.02 -0.35 9.52 -39.58 -0.38 -0.73 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.50 5.74 -51.93 -0.30 0.20 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.52 6.49 -51.93 -0.34 0.18 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.38 1.42 9.08 45.56 0.41 1.83 16 37 H 0.10 1.10 6.91 -51.93 -0.36 0.74 16 38 H 0.08 0.74 7.52 -51.93 -0.39 0.35 16 39 H 0.13 1.86 7.62 -52.48 -0.40 1.46 16 40 H 0.13 2.31 8.06 -52.48 -0.42 1.88 16 41 H 0.03 0.64 7.95 -51.93 -0.41 0.22 16 42 H 0.03 0.63 7.95 -51.93 -0.41 0.22 16 43 H 0.27 7.84 7.22 -40.82 -0.29 7.54 16 44 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 45 H 0.13 1.78 7.62 -52.48 -0.40 1.38 16 LS Contribution 373.28 15.07 5.63 5.63 Total: -1.00 -34.02 373.28 -10.88 -44.90 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -5.83 Total: 1.78 kcal Atomic # 6 Polarization: -31.78 SS G_CDS: -3.12 Total: -34.90 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.44 Total: -36.95 kcal Atomic # 8 Polarization: -35.32 SS G_CDS: -2.28 Total: -37.61 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -5.08 Total: 19.73 kcal Atomic # 16 Polarization: 38.03 SS G_CDS: -0.62 Total: 37.42 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.02 -10.88 -44.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885248704.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.470 kcal (2) G-P(sol) polarization free energy of solvation -34.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds