Wall clock time and date at job start Tue Mar 31 2020 23:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.70395 * 2 1 4 4 C 1.53196 * 109.59147 * 239.64637 * 2 1 3 5 5 C 1.53045 * 109.30876 * 294.84704 * 4 2 1 6 6 C 1.53043 * 109.54002 * 298.63389 * 5 4 2 7 7 H 1.09004 * 109.49285 * 301.41209 * 6 5 4 8 8 O 1.42898 * 109.49748 * 181.35170 * 6 5 4 9 9 C 1.52760 * 109.38191 * 61.24068 * 6 5 4 10 10 N 1.46924 * 109.58951 * 120.35573 * 2 1 3 11 11 S 1.65600 * 120.63075 * 246.15890 * 10 2 1 12 12 O 1.42091 * 106.40293 * 336.45847 * 11 10 2 13 13 O 1.42105 * 106.40393 * 203.53390 * 11 10 2 14 14 C 1.76199 * 107.21792 * 89.99729 * 11 10 2 15 15 C 1.38238 * 120.00464 * 90.00030 * 14 11 10 16 16 C 1.38233 * 120.00443 * 180.02562 * 15 14 11 17 17 C 1.38231 * 119.99939 * 0.02562 * 16 15 14 18 18 C 1.50696 * 120.00100 * 179.97438 * 17 16 15 19 19 C 1.50706 * 109.47259 * 89.99885 * 18 17 16 20 20 H 1.08005 * 119.99758 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00102 * 180.02562 * 19 18 17 22 22 N 1.31516 * 120.00217 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47057 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.47389 * 300.00068 * 23 21 19 26 26 H 1.48504 * 109.47102 * 60.00417 * 23 21 19 27 27 C 1.38242 * 120.00142 * 0.25275 * 17 16 15 28 28 C 1.38231 * 119.99375 * 359.48998 * 27 17 16 29 29 H 1.08995 * 109.47289 * 299.64172 * 1 2 3 30 30 H 1.09003 * 109.47187 * 59.64486 * 1 2 3 31 31 H 1.09001 * 109.47052 * 179.64136 * 1 2 3 32 32 H 1.08993 * 109.49665 * 54.79450 * 4 2 1 33 33 H 1.08994 * 109.49949 * 174.89708 * 4 2 1 34 34 H 1.09003 * 109.46137 * 58.65572 * 5 4 2 35 35 H 1.09000 * 109.45885 * 178.60957 * 5 4 2 36 36 H 0.96700 * 114.00313 * 59.99600 * 8 6 5 37 37 H 1.08999 * 109.50467 * 185.71087 * 9 6 5 38 38 H 1.08997 * 109.43573 * 65.42693 * 9 6 5 39 39 H 1.08005 * 119.99832 * 359.97438 * 15 14 11 40 40 H 1.08005 * 120.00126 * 179.97438 * 16 15 14 41 41 H 1.09001 * 109.47545 * 330.00225 * 18 17 16 42 42 H 1.09006 * 109.47511 * 209.99890 * 18 17 16 43 43 H 0.97001 * 119.99646 * 359.97438 * 22 21 19 44 44 H 1.07995 * 120.00242 * 179.73168 * 27 17 16 45 45 H 1.08006 * 119.99887 * 180.23251 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7293 -1.2454 5 6 1.6415 -2.2041 -1.1701 6 6 2.2801 -2.8464 0.0635 7 1 3.3640 -2.7474 0.0053 8 8 1.9297 -4.2308 0.1158 9 6 1.7740 -2.1421 1.3211 10 7 2.0226 -0.6995 1.1944 11 16 2.8481 0.1210 2.3724 12 8 3.3992 1.2724 1.7482 13 8 3.6353 -0.8439 3.0570 14 6 1.6577 0.7057 3.5325 15 6 1.3038 -0.0785 4.6145 16 6 0.3696 0.3799 5.5244 17 6 -0.2112 1.6225 5.3520 18 6 -1.2301 2.1221 6.3436 19 6 -0.5316 2.8804 7.4427 20 1 0.5428 2.9900 7.4248 21 6 -1.2639 3.4343 8.4712 22 7 -2.5721 3.3004 8.4933 23 14 -0.3980 4.3737 9.8339 24 1 -1.4020 4.8662 10.8110 25 1 0.5631 3.4745 10.5216 26 1 0.3333 5.5279 9.2522 27 6 0.1385 2.4044 4.2669 28 6 1.0766 1.9480 3.3600 29 1 -0.3633 0.5082 0.8931 30 1 -0.3634 0.5193 -0.8868 31 1 -0.3633 -1.0277 -0.0064 32 1 1.6076 -0.2785 -2.1368 33 1 3.1297 -0.6503 -1.2913 34 1 0.5566 -2.2815 -1.0994 35 1 1.9844 -2.7202 -2.0669 36 1 2.2207 -4.7395 -0.6534 37 1 2.3025 -2.5288 2.1924 38 1 0.7043 -2.3204 1.4310 39 1 1.7566 -1.0499 4.7485 40 1 0.0928 -0.2330 6.3695 41 1 -1.7669 1.2751 6.7710 42 1 -1.9355 2.7819 5.8385 43 1 -3.0216 2.8123 7.7859 44 1 -0.3185 3.3732 4.1299 45 1 1.3526 2.5605 2.5142 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885248704.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:36 Heat of formation + Delta-G solvation = -139.252662 kcal Electronic energy + Delta-G solvation = -27944.517569 eV Core-core repulsion = 24052.029455 eV Total energy + Delta-G solvation = -3892.488114 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.36877 -40.32937 -38.54395 -37.19739 -37.07490 -35.98839 -33.39625 -33.27156 -32.08847 -31.91582 -28.93354 -28.35080 -25.55029 -24.99209 -23.89591 -23.51879 -22.73449 -21.31992 -19.81146 -19.13056 -18.98310 -18.61846 -18.09938 -17.17412 -16.58116 -16.27077 -16.08722 -15.68803 -15.61107 -15.55468 -15.47453 -15.15310 -15.03920 -14.57538 -14.39300 -13.99149 -13.87353 -13.59191 -13.57746 -13.48883 -13.30382 -13.25029 -12.97863 -12.82214 -12.75792 -12.57569 -12.55442 -12.15510 -11.98620 -11.87758 -11.71855 -11.69646 -11.50553 -11.15977 -10.76326 -10.64583 -10.16445 -10.07039 -9.95843 -8.76036 -6.50219 -0.79968 -0.17038 0.28858 1.49868 1.56698 1.76862 1.77660 2.42058 2.52215 2.66209 3.03637 3.06486 3.39752 3.55003 3.75673 3.84146 3.86915 3.96673 3.99001 4.07518 4.16381 4.23971 4.32718 4.34998 4.37366 4.63109 4.65427 4.68477 4.74051 4.79072 4.83973 4.93802 4.97868 5.00219 5.04067 5.07276 5.09738 5.19529 5.22343 5.27000 5.51145 5.57410 5.69050 5.75875 5.87025 6.05715 6.45701 6.88619 7.29193 8.63269 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021810 B = 0.002747 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.514028 B =10192.045707 C =10274.502166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.131 3.869 3 H 0.104 0.896 4 C -0.121 4.121 5 C -0.146 4.146 6 C 0.096 3.904 7 H 0.059 0.941 8 O -0.579 6.579 9 C 0.117 3.883 10 N -0.982 5.982 11 S 2.717 3.283 12 O -0.974 6.974 13 O -0.980 6.980 14 C -0.699 4.699 15 C -0.019 4.019 16 C -0.155 4.155 17 C 0.000 4.000 18 C 0.033 3.967 19 C -0.610 4.610 20 H 0.045 0.955 21 C -0.029 4.029 22 N -0.930 5.930 23 Si 1.115 2.885 24 H -0.279 1.279 25 H -0.271 1.271 26 H -0.270 1.270 27 C -0.153 4.153 28 C -0.015 4.015 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.399 0.601 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.154 0.846 40 H 0.128 0.872 41 H 0.009 0.991 42 H 0.011 0.989 43 H 0.259 0.741 44 H 0.130 0.870 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.776 -11.944 -24.174 28.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.026 3.974 3 H 0.121 0.879 4 C -0.160 4.160 5 C -0.183 4.183 6 C 0.036 3.964 7 H 0.077 0.923 8 O -0.388 6.388 9 C -0.009 4.009 10 N -0.822 5.822 11 S 2.810 3.190 12 O -0.964 6.964 13 O -0.970 6.970 14 C -0.786 4.786 15 C -0.038 4.038 16 C -0.174 4.174 17 C -0.001 4.001 18 C -0.004 4.004 19 C -0.647 4.647 20 H 0.064 0.936 21 C -0.227 4.227 22 N -0.567 5.567 23 Si 0.936 3.064 24 H -0.204 1.204 25 H -0.196 1.196 26 H -0.195 1.195 27 C -0.172 4.172 28 C -0.034 4.034 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.122 0.878 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.250 0.750 37 H 0.108 0.892 38 H 0.102 0.898 39 H 0.171 0.829 40 H 0.146 0.854 41 H 0.027 0.973 42 H 0.029 0.971 43 H 0.068 0.932 44 H 0.148 0.852 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 9.160 -10.819 -22.175 26.319 hybrid contribution -0.632 -0.790 -1.097 1.492 sum 8.529 -11.609 -23.271 27.369 Atomic orbital electron populations 1.22217 0.93980 1.03261 1.03018 1.21400 0.95423 0.96734 0.83855 0.87852 1.21874 1.01804 0.95186 0.97144 1.22240 1.02223 0.95933 0.97933 1.21876 0.98161 0.81455 0.94926 0.92286 1.86422 1.82952 1.19963 1.49424 1.21194 1.02777 0.77852 0.99038 1.57594 1.74718 1.16655 1.33240 1.01059 0.73158 0.72437 0.72384 1.93524 1.76110 1.50889 1.75868 1.93527 1.66802 1.61811 1.74862 1.30880 1.24168 1.06201 1.17316 1.20998 0.92808 0.98841 0.91129 1.21265 0.99044 0.96581 1.00506 1.20611 0.93665 0.93025 0.92761 1.18425 0.93388 0.95427 0.93132 1.22159 0.94962 1.37882 1.09745 0.93648 1.27368 0.95850 0.97195 1.02323 1.70920 1.09501 1.40820 1.35457 0.82950 0.74494 0.75764 0.73174 1.20423 1.19591 1.19501 1.21277 1.00110 1.00555 0.95284 1.21009 0.91473 0.93015 0.97946 0.93340 0.89330 0.91363 0.87846 0.91251 0.90385 0.89271 0.74994 0.89195 0.89821 0.82886 0.85446 0.97283 0.97126 0.93180 0.85209 0.82465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 9.03 71.98 0.65 -1.62 16 2 C 0.13 1.98 3.25 44.97 0.15 2.13 16 3 H 0.10 1.64 6.92 -2.39 -0.02 1.62 16 4 C -0.12 -1.25 5.55 30.67 0.17 -1.08 16 5 C -0.15 -1.38 5.30 30.62 0.16 -1.21 16 6 C 0.10 1.35 3.60 30.53 0.11 1.46 16 7 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 8 O -0.58 -8.04 13.32 -148.98 -1.99 -10.02 16 9 C 0.12 2.14 5.69 86.22 0.49 2.63 16 10 N -0.98 -19.16 3.00 -491.55 -1.48 -20.63 16 11 S 2.72 72.32 5.73 -56.49 -0.32 72.00 16 12 O -0.97 -28.91 15.87 -128.00 -2.03 -30.94 16 13 O -0.98 -30.44 15.87 -128.00 -2.03 -32.47 16 14 C -0.70 -21.38 5.97 22.27 0.13 -21.24 16 15 C -0.02 -0.61 9.52 22.27 0.21 -0.39 16 16 C -0.16 -5.96 9.70 22.27 0.22 -5.74 16 17 C 0.00 -0.01 5.07 -19.87 -0.10 -0.11 16 18 C 0.03 1.70 4.42 29.10 0.13 1.83 16 19 C -0.61 -34.64 9.09 25.60 0.23 -34.40 16 20 H 0.05 2.59 7.74 -2.91 -0.02 2.56 16 21 C -0.03 -1.65 5.46 84.65 0.46 -1.19 16 22 N -0.93 -56.46 13.65 21.45 0.29 -56.16 16 23 Si 1.12 50.04 29.90 68.60 2.05 52.09 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 27 C -0.15 -5.77 9.70 22.27 0.22 -5.56 16 28 C -0.02 -0.48 9.52 22.27 0.21 -0.27 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.89 5.74 -2.39 -0.01 0.88 16 32 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.08 0.77 6.49 -2.39 -0.02 0.75 16 35 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.40 1.90 9.08 -74.06 -0.67 1.23 16 37 H 0.09 1.85 6.91 -2.39 -0.02 1.83 16 38 H 0.08 1.44 7.52 -2.39 -0.02 1.43 16 39 H 0.15 4.19 7.62 -2.91 -0.02 4.17 16 40 H 0.13 4.76 8.06 -2.91 -0.02 4.74 16 41 H 0.01 0.48 7.95 -2.39 -0.02 0.46 16 42 H 0.01 0.56 7.95 -2.38 -0.02 0.54 16 43 H 0.26 15.74 7.22 -92.71 -0.67 15.07 16 44 H 0.13 4.70 8.06 -2.91 -0.02 4.67 16 45 H 0.16 4.01 7.62 -2.91 -0.02 3.99 16 Total: -1.00 -73.99 373.28 -1.63 -75.63 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.43 Total: 15.29 kcal Atomic # 6 Polarization: -68.22 SS G_CDS: 3.44 Total: -64.78 kcal Atomic # 7 Polarization: -75.62 SS G_CDS: -1.18 Total: -76.80 kcal Atomic # 8 Polarization: -67.38 SS G_CDS: -6.05 Total: -73.43 kcal Atomic # 14 Polarization: 50.04 SS G_CDS: 2.05 Total: 52.09 kcal Atomic # 16 Polarization: 72.32 SS G_CDS: -0.32 Total: 72.00 kcal Total: -73.99 -1.63 -75.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885248704.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.627 kcal (2) G-P(sol) polarization free energy of solvation -73.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds