Wall clock time and date at job start Tue Mar 31 2020 23:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47259 * 2 1 4 4 N 1.46498 * 109.47034 * 120.00613 * 2 1 3 5 5 S 1.65602 * 119.99612 * 264.71801 * 4 2 1 6 6 O 1.42104 * 106.40175 * 178.81816 * 5 4 2 7 7 O 1.42095 * 106.40656 * 311.73868 * 5 4 2 8 8 C 1.76203 * 107.21635 * 65.28001 * 5 4 2 9 9 C 1.38232 * 120.00096 * 269.72284 * 8 5 4 10 10 C 1.38233 * 120.00056 * 179.76550 * 9 8 5 11 11 C 1.38240 * 120.00057 * 0.49113 * 10 9 8 12 12 C 1.50693 * 119.99861 * 179.76924 * 11 10 9 13 13 C 1.50699 * 109.47020 * 270.01283 * 12 11 10 14 14 H 1.08007 * 119.99816 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00088 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00302 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99884 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46784 * 90.00692 * 17 15 13 19 19 H 1.48505 * 109.46988 * 209.99821 * 17 15 13 20 20 H 1.48490 * 109.47355 * 330.00241 * 17 15 13 21 21 C 1.38241 * 119.99661 * 359.78369 * 11 10 9 22 22 C 1.38235 * 120.00030 * 359.96284 * 21 11 10 23 23 C 1.53005 * 109.46913 * 240.00370 * 2 1 3 24 24 C 1.52993 * 115.55001 * 274.41934 * 23 2 1 25 25 O 1.42898 * 109.47252 * 179.97438 * 24 23 2 26 26 C 1.52999 * 117.49956 * 128.74540 * 23 2 1 27 27 C 1.52998 * 117.49498 * 60.08614 * 23 2 1 28 28 H 1.08999 * 109.47174 * 59.98917 * 1 2 3 29 29 H 1.08994 * 109.47476 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46713 * 299.99498 * 1 2 3 31 31 H 0.97001 * 120.00384 * 85.00279 * 4 2 1 32 32 H 1.08001 * 119.99701 * 359.97438 * 9 8 5 33 33 H 1.07999 * 119.99876 * 180.24852 * 10 9 8 34 34 H 1.08997 * 109.47362 * 30.01760 * 12 11 10 35 35 H 1.09007 * 109.46781 * 150.02161 * 12 11 10 36 36 H 0.96992 * 120.00330 * 180.02562 * 16 15 13 37 37 H 1.07993 * 119.99794 * 179.97438 * 21 11 10 38 38 H 1.07993 * 119.99689 * 180.02562 * 22 21 11 39 39 H 1.09008 * 109.47112 * 299.99898 * 24 23 2 40 40 H 1.09000 * 109.47367 * 59.99827 * 24 23 2 41 41 H 0.96698 * 114.00071 * 179.97438 * 25 24 23 42 42 H 1.09007 * 117.49483 * 0.02562 * 26 23 2 43 43 H 1.08998 * 117.50104 * 145.01713 * 26 23 2 44 44 H 1.09001 * 117.49510 * 214.97749 * 27 23 2 45 45 H 1.08996 * 117.50253 * 359.97438 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 16 2.4187 0.1776 2.5481 6 8 2.8237 -0.7689 3.5276 7 8 3.2481 1.2445 2.1088 8 6 0.9369 0.9155 3.1519 9 6 0.5619 2.1716 2.7135 10 6 -0.6031 2.7484 3.1835 11 6 -1.3879 2.0733 4.0997 12 6 -2.6553 2.7043 4.6159 13 6 -2.3479 3.5102 5.8517 14 1 -1.3358 3.5607 6.2255 15 6 -3.3583 4.1839 6.5044 16 7 -4.5906 4.1228 6.0490 17 14 -2.9771 5.1834 8.0358 18 1 -2.6382 6.5757 7.6464 19 1 -4.1641 5.1940 8.9282 20 1 -1.8262 4.5751 8.7502 21 6 -1.0099 0.8194 4.5424 22 6 0.1524 0.2404 4.0684 23 6 2.0399 -0.7212 -1.2493 24 6 2.1596 -2.2418 -1.1308 25 8 2.6436 -2.7791 -2.3633 26 6 3.0762 0.0040 -2.1102 27 6 1.6373 -0.1481 -2.6096 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 2.1110 -1.6563 1.1947 32 1 1.1774 2.7010 2.0013 33 1 -0.8982 3.7282 2.8380 34 1 -3.0736 3.3579 3.8506 35 1 -3.3759 1.9240 4.8611 36 1 -5.3014 4.5970 6.5079 37 1 -1.6228 0.2922 5.2584 38 1 0.4475 -0.7392 4.4139 39 1 2.8541 -2.4902 -0.3281 40 1 1.1808 -2.6672 -0.9090 41 1 2.7447 -3.7408 -2.3604 42 1 3.3950 0.9948 -1.7862 43 1 3.8431 -0.6022 -2.5923 44 1 1.4580 -0.8545 -3.4202 45 1 1.0087 0.7424 -2.6145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885296551.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:18 Heat of formation + Delta-G solvation = -85.435518 kcal Electronic energy + Delta-G solvation = -27477.451442 eV Core-core repulsion = 23587.297014 eV Total energy + Delta-G solvation = -3890.154428 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.58051 -38.84167 -37.18353 -36.38585 -35.79309 -34.65552 -33.70022 -31.59233 -30.61938 -29.75111 -27.58129 -27.40046 -23.83229 -23.71435 -22.43952 -22.37405 -20.92547 -19.61080 -19.42414 -18.19139 -17.81943 -17.11197 -16.49025 -16.43871 -15.54817 -15.15728 -15.11472 -14.88608 -14.59701 -14.39843 -14.24353 -13.86206 -13.69197 -13.20648 -13.13130 -12.88036 -12.62619 -12.39660 -12.16619 -12.05904 -11.99161 -11.86308 -11.72493 -11.50901 -11.49245 -11.07529 -11.01032 -10.93628 -10.86704 -10.62231 -10.51236 -10.49850 -9.99482 -9.76178 -9.68544 -9.53002 -8.61402 -8.55669 -8.40341 -6.19009 -4.24090 0.46752 1.29818 1.76716 2.97775 3.23033 3.29710 3.34015 3.46081 3.71689 3.76721 4.09636 4.24532 4.35906 4.44848 4.52115 4.68876 4.83482 4.93248 5.00304 5.11387 5.14674 5.20743 5.22126 5.32996 5.38125 5.49653 5.56430 5.69520 5.69784 5.79183 5.81749 5.88610 5.97021 6.02037 6.09640 6.21922 6.30172 6.47921 6.74748 6.81411 6.88508 7.21490 7.26754 7.40421 7.56631 7.76069 8.11168 8.80740 9.41068 10.91024 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020930 B = 0.002657 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.466470 B =10536.218152 C =11064.848791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.191 3.809 3 H 0.098 0.902 4 N -1.115 6.115 5 S 2.696 3.304 6 O -0.966 6.966 7 O -0.963 6.963 8 C -0.702 4.702 9 C -0.024 4.024 10 C -0.145 4.145 11 C 0.028 3.972 12 C 0.039 3.961 13 C -0.518 4.518 14 H 0.059 0.941 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.898 3.102 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.272 1.272 21 C -0.145 4.145 22 C -0.021 4.021 23 C -0.140 4.140 24 C 0.111 3.889 25 O -0.570 6.570 26 C -0.161 4.161 27 C -0.155 4.155 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.414 0.586 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.035 0.965 35 H 0.034 0.966 36 H 0.264 0.736 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.381 0.619 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.295 -12.887 -16.503 23.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.084 3.916 3 H 0.116 0.884 4 N -0.874 5.874 5 S 2.789 3.211 6 O -0.957 6.957 7 O -0.953 6.953 8 C -0.792 4.792 9 C -0.044 4.044 10 C -0.164 4.164 11 C 0.027 3.973 12 C 0.003 3.997 13 C -0.556 4.556 14 H 0.077 0.923 15 C -0.141 4.141 16 N -0.530 5.530 17 Si 0.726 3.274 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.164 4.164 22 C -0.040 4.040 23 C -0.142 4.142 24 C 0.033 3.967 25 O -0.376 6.376 26 C -0.198 4.198 27 C -0.192 4.192 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.249 0.751 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.228 0.772 42 H 0.115 0.885 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.938 -11.922 -16.271 23.439 hybrid contribution -0.701 -0.252 1.185 1.400 sum 11.237 -12.174 -15.085 22.406 Atomic orbital electron populations 1.22392 0.94338 1.03211 1.03492 1.20274 0.94136 0.95572 0.81637 0.88402 1.55720 1.84188 1.19638 1.27854 1.01606 0.74067 0.73252 0.72185 1.93568 1.81358 1.62328 1.58410 1.93560 1.64384 1.55865 1.81491 1.30280 1.24591 1.08219 1.16110 1.20759 0.95179 0.92174 0.96246 1.21236 0.95134 1.00634 0.99348 1.21115 0.96410 0.91605 0.88145 1.18536 0.88504 0.96084 0.96618 1.20967 0.94811 1.30020 1.09759 0.92294 1.25000 0.94913 0.96447 0.97761 1.69941 1.00098 1.42614 1.40329 0.86482 0.77994 0.80435 0.82526 1.20435 1.21021 1.19697 1.21243 0.97281 0.96457 1.01431 1.20751 0.92686 0.98283 0.92296 1.21572 1.06684 0.93431 0.92491 1.21425 0.97775 0.91527 0.85935 1.86428 1.88906 1.26410 1.35820 1.23100 0.92910 1.01351 1.02454 1.22979 0.98099 1.02547 0.95612 0.91061 0.91827 0.90961 0.75134 0.85350 0.85361 0.94719 0.94737 0.92615 0.85387 0.85317 0.92990 0.92808 0.77190 0.88513 0.88134 0.88009 0.88601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 9.36 37.16 0.35 -1.22 16 2 C 0.19 1.76 3.01 -67.93 -0.20 1.56 16 3 H 0.10 0.94 7.25 -51.93 -0.38 0.57 16 4 N -1.12 -10.85 5.37 -4.89 -0.03 -10.88 16 5 S 2.70 36.41 5.72 -107.50 -0.62 35.80 16 6 O -0.97 -15.29 17.28 -57.17 -0.99 -16.27 16 7 O -0.96 -15.26 16.60 -57.17 -0.95 -16.21 16 8 C -0.70 -10.58 5.08 -39.58 -0.20 -10.78 16 9 C -0.02 -0.37 8.62 -39.59 -0.34 -0.71 16 10 C -0.14 -2.58 9.70 -39.58 -0.38 -2.96 16 11 C 0.03 0.55 5.07 -104.62 -0.53 0.02 16 12 C 0.04 0.95 5.10 -29.04 -0.15 0.80 16 13 C -0.52 -13.90 9.09 -34.44 -0.31 -14.21 16 14 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -25.35 13.29 55.43 0.74 -24.62 16 17 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 C -0.15 -2.62 9.70 -39.58 -0.38 -3.00 16 22 C -0.02 -0.32 9.52 -39.58 -0.38 -0.70 16 23 C -0.14 -1.18 2.01 -154.51 -0.31 -1.49 16 24 C 0.11 0.79 6.26 37.15 0.23 1.03 16 25 O -0.57 -4.03 11.91 -35.23 -0.42 -4.45 16 26 C -0.16 -1.42 9.59 -26.69 -0.26 -1.68 16 27 C -0.15 -1.24 9.15 -26.69 -0.24 -1.49 16 28 H 0.07 0.56 7.29 -51.93 -0.38 0.18 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.76 6.23 -51.93 -0.32 0.43 16 31 H 0.41 3.14 6.73 -34.47 -0.23 2.91 16 32 H 0.13 1.71 7.61 -52.49 -0.40 1.31 16 33 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 34 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 35 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 36 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.13 2.21 8.06 -52.49 -0.42 1.78 16 38 H 0.13 1.75 7.62 -52.49 -0.40 1.35 16 39 H 0.05 0.33 6.90 -51.92 -0.36 -0.02 16 40 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.38 1.07 9.12 45.56 0.42 1.49 16 42 H 0.10 0.84 8.05 -51.92 -0.42 0.42 16 43 H 0.10 0.91 7.66 -51.93 -0.40 0.52 16 44 H 0.10 0.84 7.66 -51.93 -0.40 0.44 16 45 H 0.10 0.69 7.61 -51.93 -0.40 0.29 16 LS Contribution 382.11 15.07 5.76 5.76 Total: -1.00 -33.53 382.11 -10.47 -44.00 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -5.73 Total: 4.14 kcal Atomic # 6 Polarization: -30.06 SS G_CDS: -3.21 Total: -33.27 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.71 Total: -35.50 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -2.36 Total: -36.93 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 36.41 SS G_CDS: -0.62 Total: 35.80 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.53 -10.47 -44.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885296551.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.437 kcal (2) G-P(sol) polarization free energy of solvation -33.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds