Wall clock time and date at job start Tue Mar 31 2020 23:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47259 * 2 1 4 4 N 1.46498 * 109.47034 * 120.00613 * 2 1 3 5 5 S 1.65602 * 119.99612 * 264.71801 * 4 2 1 6 6 O 1.42104 * 106.40175 * 178.81816 * 5 4 2 7 7 O 1.42095 * 106.40656 * 311.73868 * 5 4 2 8 8 C 1.76203 * 107.21635 * 65.28001 * 5 4 2 9 9 C 1.38232 * 120.00096 * 269.72284 * 8 5 4 10 10 C 1.38233 * 120.00056 * 179.76550 * 9 8 5 11 11 C 1.38240 * 120.00057 * 0.49113 * 10 9 8 12 12 C 1.50693 * 119.99861 * 179.76924 * 11 10 9 13 13 C 1.50699 * 109.47020 * 270.01283 * 12 11 10 14 14 H 1.08007 * 119.99816 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00088 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00302 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99884 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46784 * 90.00692 * 17 15 13 19 19 H 1.48505 * 109.46988 * 209.99821 * 17 15 13 20 20 H 1.48490 * 109.47355 * 330.00241 * 17 15 13 21 21 C 1.38241 * 119.99661 * 359.78369 * 11 10 9 22 22 C 1.38235 * 120.00030 * 359.96284 * 21 11 10 23 23 C 1.53005 * 109.46913 * 240.00370 * 2 1 3 24 24 C 1.52993 * 115.55001 * 274.41934 * 23 2 1 25 25 O 1.42898 * 109.47252 * 179.97438 * 24 23 2 26 26 C 1.52999 * 117.49956 * 128.74540 * 23 2 1 27 27 C 1.52998 * 117.49498 * 60.08614 * 23 2 1 28 28 H 1.08999 * 109.47174 * 59.98917 * 1 2 3 29 29 H 1.08994 * 109.47476 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46713 * 299.99498 * 1 2 3 31 31 H 0.97001 * 120.00384 * 85.00279 * 4 2 1 32 32 H 1.08001 * 119.99701 * 359.97438 * 9 8 5 33 33 H 1.07999 * 119.99876 * 180.24852 * 10 9 8 34 34 H 1.08997 * 109.47362 * 30.01760 * 12 11 10 35 35 H 1.09007 * 109.46781 * 150.02161 * 12 11 10 36 36 H 0.96992 * 120.00330 * 180.02562 * 16 15 13 37 37 H 1.07993 * 119.99794 * 179.97438 * 21 11 10 38 38 H 1.07993 * 119.99689 * 180.02562 * 22 21 11 39 39 H 1.09008 * 109.47112 * 299.99898 * 24 23 2 40 40 H 1.09000 * 109.47367 * 59.99827 * 24 23 2 41 41 H 0.96698 * 114.00071 * 179.97438 * 25 24 23 42 42 H 1.09007 * 117.49483 * 0.02562 * 26 23 2 43 43 H 1.08998 * 117.50104 * 145.01713 * 26 23 2 44 44 H 1.09001 * 117.49510 * 214.97749 * 27 23 2 45 45 H 1.08996 * 117.50253 * 359.97438 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 16 2.4187 0.1776 2.5481 6 8 2.8237 -0.7689 3.5276 7 8 3.2481 1.2445 2.1088 8 6 0.9369 0.9155 3.1519 9 6 0.5619 2.1716 2.7135 10 6 -0.6031 2.7484 3.1835 11 6 -1.3879 2.0733 4.0997 12 6 -2.6553 2.7043 4.6159 13 6 -2.3479 3.5102 5.8517 14 1 -1.3358 3.5607 6.2255 15 6 -3.3583 4.1839 6.5044 16 7 -4.5906 4.1228 6.0490 17 14 -2.9771 5.1834 8.0358 18 1 -2.6382 6.5757 7.6464 19 1 -4.1641 5.1940 8.9282 20 1 -1.8262 4.5751 8.7502 21 6 -1.0099 0.8194 4.5424 22 6 0.1524 0.2404 4.0684 23 6 2.0399 -0.7212 -1.2493 24 6 2.1596 -2.2418 -1.1308 25 8 2.6436 -2.7791 -2.3633 26 6 3.0762 0.0040 -2.1102 27 6 1.6373 -0.1481 -2.6096 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 2.1110 -1.6563 1.1947 32 1 1.1774 2.7010 2.0013 33 1 -0.8982 3.7282 2.8380 34 1 -3.0736 3.3579 3.8506 35 1 -3.3759 1.9240 4.8611 36 1 -5.3014 4.5970 6.5079 37 1 -1.6228 0.2922 5.2584 38 1 0.4475 -0.7392 4.4139 39 1 2.8541 -2.4902 -0.3281 40 1 1.1808 -2.6672 -0.9090 41 1 2.7447 -3.7408 -2.3604 42 1 3.3950 0.9948 -1.7862 43 1 3.8431 -0.6022 -2.5923 44 1 1.4580 -0.8545 -3.4202 45 1 1.0087 0.7424 -2.6145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885296551.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:17 Heat of formation + Delta-G solvation = -109.298967 kcal Electronic energy + Delta-G solvation = -27478.486238 eV Core-core repulsion = 23587.297014 eV Total energy + Delta-G solvation = -3891.189225 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.30921 -40.14304 -38.36023 -36.99920 -36.96616 -35.61153 -35.36444 -33.31809 -31.95370 -30.53594 -29.23712 -28.08512 -25.58697 -24.50587 -23.71511 -23.08060 -22.46124 -20.62818 -20.16603 -19.13361 -18.71328 -18.55971 -18.08000 -17.26870 -16.85884 -16.60171 -15.97959 -15.88345 -15.66065 -15.54890 -15.22256 -15.04885 -14.64334 -14.48637 -14.41703 -14.04569 -13.72915 -13.50102 -13.40741 -13.36711 -13.25164 -13.18311 -12.90648 -12.70860 -12.67707 -12.64233 -12.16067 -12.15046 -12.02554 -11.77266 -11.65182 -11.52421 -11.38307 -11.21053 -10.66693 -10.65398 -10.26358 -9.93878 -9.91522 -8.27213 -6.39728 -0.64984 -0.05167 0.41947 1.38061 1.38529 1.49783 1.96000 2.34563 2.56252 2.77200 2.86514 3.05583 3.22463 3.32856 3.63530 3.86890 3.89973 3.98879 4.05993 4.16776 4.18673 4.26032 4.35501 4.46859 4.49705 4.52935 4.75004 4.79788 4.82949 4.85332 4.89830 4.92750 5.04487 5.12391 5.16493 5.25757 5.27002 5.27244 5.35157 5.38367 5.40525 5.67380 5.88184 5.93578 6.02929 6.10418 6.72323 6.93077 7.29417 8.82816 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020930 B = 0.002657 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.466470 B =10536.218152 C =11064.848791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.188 3.812 3 H 0.095 0.905 4 N -1.099 6.099 5 S 2.723 3.277 6 O -0.985 6.985 7 O -0.982 6.982 8 C -0.697 4.697 9 C -0.017 4.017 10 C -0.152 4.152 11 C -0.001 4.001 12 C 0.048 3.952 13 C -0.533 4.533 14 H 0.053 0.947 15 C 0.010 3.990 16 N -0.925 5.925 17 Si 0.962 3.038 18 H -0.271 1.271 19 H -0.278 1.278 20 H -0.268 1.268 21 C -0.154 4.154 22 C -0.016 4.016 23 C -0.141 4.141 24 C 0.108 3.892 25 O -0.585 6.585 26 C -0.171 4.171 27 C -0.148 4.148 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.427 0.573 32 H 0.154 0.846 33 H 0.129 0.871 34 H 0.014 0.986 35 H 0.013 0.987 36 H 0.267 0.733 37 H 0.128 0.872 38 H 0.155 0.845 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.398 0.602 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.100 0.900 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.857 -13.826 -17.107 25.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.082 3.918 3 H 0.113 0.887 4 N -0.862 5.862 5 S 2.813 3.187 6 O -0.975 6.975 7 O -0.972 6.972 8 C -0.784 4.784 9 C -0.036 4.036 10 C -0.171 4.171 11 C -0.001 4.001 12 C 0.011 3.989 13 C -0.571 4.571 14 H 0.072 0.928 15 C -0.189 4.189 16 N -0.565 5.565 17 Si 0.787 3.213 18 H -0.197 1.197 19 H -0.204 1.204 20 H -0.193 1.193 21 C -0.173 4.173 22 C -0.035 4.035 23 C -0.143 4.143 24 C 0.030 3.970 25 O -0.394 6.394 26 C -0.208 4.208 27 C -0.186 4.186 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.265 0.735 32 H 0.172 0.828 33 H 0.147 0.853 34 H 0.032 0.968 35 H 0.031 0.969 36 H 0.076 0.924 37 H 0.146 0.854 38 H 0.172 0.828 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.249 0.751 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.118 0.882 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 13.492 -12.880 -16.868 25.149 hybrid contribution -1.113 -0.053 1.237 1.665 sum 12.379 -12.933 -15.631 23.766 Atomic orbital electron populations 1.22387 0.93938 1.03817 1.03243 1.20375 0.94387 0.95563 0.81518 0.88691 1.55367 1.83835 1.20255 1.26702 1.00809 0.73052 0.72614 0.72192 1.93542 1.81505 1.62616 1.59837 1.93541 1.64729 1.57051 1.81858 1.30694 1.24670 1.07961 1.15109 1.20982 0.94298 0.92301 0.96007 1.21268 0.95840 1.00784 0.99185 1.20792 0.95760 0.93067 0.90527 1.18256 0.90244 0.94962 0.95394 1.21294 0.94567 1.30368 1.10838 0.92835 1.25846 0.94731 0.97536 1.00790 1.70048 1.00994 1.43640 1.41794 0.85482 0.77954 0.79003 0.78871 1.19677 1.20358 1.19270 1.21281 0.98372 0.95902 1.01769 1.20983 0.91591 0.99171 0.91766 1.21601 1.06333 0.94380 0.92018 1.21472 0.98684 0.90605 0.86233 1.86384 1.88945 1.28220 1.35815 1.23106 0.93257 1.01332 1.03097 1.22995 0.97572 1.02731 0.95299 0.89981 0.90842 0.92577 0.73520 0.82839 0.85300 0.96813 0.96906 0.92391 0.85412 0.82790 0.92300 0.91596 0.75147 0.88680 0.88618 0.88156 0.87799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.73 9.36 71.98 0.67 -2.05 16 2 C 0.19 3.02 3.01 44.99 0.14 3.15 16 3 H 0.10 1.61 7.25 -2.39 -0.02 1.60 16 4 N -1.10 -18.45 5.37 -169.38 -0.91 -19.35 16 5 S 2.72 66.99 5.72 -56.49 -0.32 66.66 16 6 O -0.98 -28.64 17.28 -128.00 -2.21 -30.85 16 7 O -0.98 -28.83 16.60 -128.00 -2.13 -30.96 16 8 C -0.70 -19.67 5.08 22.27 0.11 -19.56 16 9 C -0.02 -0.50 8.62 22.27 0.19 -0.30 16 10 C -0.15 -5.42 9.70 22.27 0.22 -5.21 16 11 C 0.00 -0.05 5.07 -19.87 -0.10 -0.15 16 12 C 0.05 2.44 5.10 29.10 0.15 2.59 16 13 C -0.53 -29.39 9.09 25.60 0.23 -29.16 16 14 H 0.05 2.94 7.74 -2.91 -0.02 2.91 16 15 C 0.01 0.55 5.46 84.65 0.46 1.01 16 16 N -0.93 -53.90 13.29 21.45 0.28 -53.62 16 17 Si 0.96 43.40 29.54 68.60 2.03 45.42 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 21 C -0.15 -5.57 9.70 22.27 0.22 -5.36 16 22 C -0.02 -0.48 9.52 22.27 0.21 -0.27 16 23 C -0.14 -2.06 2.01 -52.18 -0.10 -2.17 16 24 C 0.11 1.25 6.26 71.98 0.45 1.70 16 25 O -0.59 -6.93 11.91 -148.98 -1.77 -8.70 16 26 C -0.17 -2.73 9.59 30.62 0.29 -2.44 16 27 C -0.15 -2.09 9.15 30.62 0.28 -1.81 16 28 H 0.08 1.11 7.29 -2.39 -0.02 1.09 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 1.07 6.23 -2.39 -0.01 1.06 16 31 H 0.43 5.17 6.73 -96.74 -0.65 4.52 16 32 H 0.15 3.73 7.61 -2.91 -0.02 3.71 16 33 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 34 H 0.01 0.72 8.09 -2.39 -0.02 0.70 16 35 H 0.01 0.68 8.09 -2.38 -0.02 0.66 16 36 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 37 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 38 H 0.15 3.80 7.62 -2.91 -0.02 3.78 16 39 H 0.06 0.58 6.90 -2.38 -0.02 0.57 16 40 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.40 1.31 9.12 -74.06 -0.68 0.63 16 42 H 0.09 1.53 8.05 -2.38 -0.02 1.51 16 43 H 0.10 1.62 7.66 -2.39 -0.02 1.60 16 44 H 0.10 1.47 7.66 -2.39 -0.02 1.45 16 45 H 0.10 1.27 7.61 -2.39 -0.02 1.26 16 Total: -1.00 -71.88 382.11 -1.92 -73.80 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -0.31 Total: 17.61 kcal Atomic # 6 Polarization: -63.44 SS G_CDS: 3.42 Total: -60.02 kcal Atomic # 7 Polarization: -72.35 SS G_CDS: -0.62 Total: -72.97 kcal Atomic # 8 Polarization: -64.40 SS G_CDS: -6.11 Total: -70.51 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: 66.99 SS G_CDS: -0.32 Total: 66.66 kcal Total: -71.88 -1.92 -73.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885296551.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.499 kcal (2) G-P(sol) polarization free energy of solvation -71.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds