Wall clock time and date at job start Tue Mar 31 2020 23:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 110.27562 * 2 1 4 4 C 1.54946 * 110.39623 * 237.84674 * 2 1 3 5 5 C 1.55300 * 100.94395 * 204.60012 * 4 2 1 6 6 H 1.08995 * 111.02605 * 275.86510 * 5 4 2 7 7 N 1.46506 * 110.84434 * 152.32597 * 5 4 2 8 8 S 1.65593 * 119.99953 * 102.17094 * 7 5 4 9 9 O 1.42095 * 106.40147 * 311.45692 * 8 7 5 10 10 O 1.42104 * 106.39988 * 178.53612 * 8 7 5 11 11 C 1.76202 * 107.22068 * 64.99940 * 8 7 5 12 12 C 1.38231 * 120.00153 * 89.99521 * 11 8 7 13 13 C 1.38236 * 120.00242 * 180.02562 * 12 11 8 14 14 C 1.38233 * 119.99565 * 359.95900 * 13 12 11 15 15 C 1.50700 * 119.99980 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.46869 * 90.00014 * 15 14 13 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48501 * 109.47188 * 90.00793 * 20 18 16 22 22 H 1.48501 * 109.47085 * 210.00372 * 20 18 16 23 23 H 1.48498 * 109.47634 * 330.00608 * 20 18 16 24 24 C 1.38233 * 120.00375 * 0.27512 * 14 13 12 25 25 C 1.38235 * 119.99785 * 269.97868 * 11 8 7 26 26 C 1.54386 * 102.25140 * 34.13776 * 5 4 2 27 27 H 1.09002 * 109.82880 * 98.15700 * 26 5 4 28 28 C 1.53000 * 109.82673 * 219.03507 * 26 5 4 29 29 O 1.43232 * 107.58709 * 338.63906 * 26 5 4 30 30 H 1.08998 * 109.47094 * 299.36759 * 1 2 3 31 31 H 1.09003 * 109.46764 * 59.36562 * 1 2 3 32 32 H 1.08999 * 109.47359 * 179.36181 * 1 2 3 33 33 H 1.09003 * 111.12269 * 86.67580 * 4 2 1 34 34 H 1.09006 * 111.12404 * 322.52598 * 4 2 1 35 35 H 0.97003 * 119.99931 * 282.16387 * 7 5 4 36 36 H 1.08004 * 120.00009 * 359.97438 * 12 11 8 37 37 H 1.08000 * 120.00222 * 179.97438 * 13 12 11 38 38 H 1.09004 * 109.47210 * 330.00307 * 15 14 13 39 39 H 1.08994 * 109.47551 * 209.99960 * 15 14 13 40 40 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 41 41 H 1.08005 * 120.00620 * 179.72269 * 24 14 13 42 42 H 1.08000 * 120.00082 * 359.97438 * 25 11 8 43 43 H 1.09002 * 109.46657 * 60.00073 * 28 26 5 44 44 H 1.08997 * 109.46815 * 179.97438 * 28 26 5 45 45 H 1.08996 * 109.47634 * 300.00210 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0700 -0.7729 -1.2296 5 6 3.4722 -1.2002 -0.7167 6 1 4.2015 -0.4033 -0.8623 7 7 3.9135 -2.4338 -1.3724 8 16 5.0222 -2.3676 -2.6006 9 8 4.5680 -1.3634 -3.4975 10 8 5.2639 -3.7111 -2.9958 11 6 6.5305 -1.7731 -1.9105 12 6 7.4554 -2.6643 -1.3994 13 6 8.6384 -2.1978 -0.8574 14 6 8.8969 -0.8402 -0.8274 15 6 10.1863 -0.3316 -0.2361 16 6 11.2363 -0.2519 -1.3142 17 1 10.9940 -0.5403 -2.3264 18 6 12.5046 0.1951 -1.0096 19 7 12.7996 0.5467 0.2229 20 14 13.8039 0.3012 -2.3475 21 1 13.7526 1.6428 -2.9821 22 1 15.1469 0.0866 -1.7514 23 1 13.5451 -0.7415 -3.3727 24 6 7.9699 0.0513 -1.3341 25 6 6.7890 -0.4155 -1.8804 26 6 3.2124 -1.4395 0.7862 27 1 3.0649 -2.5035 0.9712 28 6 4.3999 -0.9302 1.6057 29 8 2.0286 -0.7157 1.1414 30 1 -0.3633 0.5040 0.8956 31 1 -0.3633 0.5237 -0.8843 32 1 -0.3634 -1.0276 -0.0114 33 1 2.1517 -0.1204 -2.0989 34 1 1.4506 -1.6423 -1.4502 35 1 3.5563 -3.2893 -1.0870 36 1 7.2533 -3.7250 -1.4227 37 1 9.3608 -2.8941 -0.4578 38 1 10.5205 -1.0123 0.5469 39 1 10.0255 0.6594 0.1883 40 1 13.6920 0.8608 0.4372 41 1 8.1698 1.1123 -1.3066 42 1 6.0667 0.2808 -2.2804 43 1 4.5325 0.1371 1.4285 44 1 4.2103 -1.1015 2.6653 45 1 5.3027 -1.4629 1.3070 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885333336.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:59 Heat of formation + Delta-G solvation = -112.515328 kcal Electronic energy + Delta-G solvation = -27635.628940 eV Core-core repulsion = 23744.300244 eV Total energy + Delta-G solvation = -3891.328696 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.18716 -38.87136 -37.22304 -35.85338 -35.29834 -33.72224 -32.98611 -31.61079 -30.74085 -30.63711 -28.57588 -27.48347 -24.13506 -23.77724 -22.47042 -21.88762 -21.09514 -20.96377 -19.65120 -18.07496 -17.48993 -16.84408 -16.65296 -16.47236 -15.64551 -15.20597 -15.07903 -14.58715 -14.42169 -14.34718 -14.19663 -13.84935 -13.34301 -13.18112 -13.14459 -12.89081 -12.80396 -12.31457 -12.25867 -12.18726 -12.12130 -12.01650 -11.95277 -11.75695 -11.58591 -11.52927 -11.45439 -11.12112 -10.98658 -10.94982 -10.56031 -10.53092 -9.90285 -9.80059 -9.72039 -9.59037 -8.65643 -8.57036 -8.44671 -6.20237 -4.25394 0.39130 1.25198 1.72676 2.88033 3.22146 3.28922 3.33047 3.42930 3.66773 4.04914 4.16394 4.27842 4.33982 4.36180 4.52964 4.64159 4.83156 4.93766 5.02728 5.09998 5.11743 5.16120 5.18467 5.28767 5.32654 5.48384 5.58962 5.66186 5.67714 5.70363 5.75602 5.84449 5.85016 5.94251 6.05280 6.18159 6.26015 6.43685 6.64993 6.77337 6.78028 6.85499 7.24393 7.37565 7.54295 7.74727 8.09537 8.79352 9.39784 10.89775 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017063 B = 0.002882 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.584139 B = 9712.289624 C =10543.698983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.074 3.926 3 H 0.075 0.925 4 C -0.168 4.168 5 C 0.125 3.875 6 H 0.107 0.893 7 N -1.108 6.108 8 S 2.696 3.304 9 O -0.961 6.961 10 O -0.963 6.963 11 C -0.705 4.705 12 C -0.021 4.021 13 C -0.145 4.145 14 C 0.029 3.971 15 C 0.039 3.961 16 C -0.518 4.518 17 H 0.059 0.941 18 C 0.061 3.939 19 N -0.891 5.891 20 Si 0.899 3.101 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.272 1.272 24 C -0.144 4.144 25 C -0.027 4.027 26 C 0.076 3.924 27 H 0.087 0.913 28 C -0.166 4.166 29 O -0.372 6.372 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.418 0.582 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.264 0.736 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.477 -3.276 1.093 22.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.017 3.983 3 H 0.093 0.907 4 C -0.208 4.208 5 C 0.017 3.983 6 H 0.125 0.875 7 N -0.866 5.866 8 S 2.788 3.212 9 O -0.951 6.951 10 O -0.954 6.954 11 C -0.795 4.795 12 C -0.040 4.040 13 C -0.163 4.163 14 C 0.028 3.972 15 C 0.002 3.998 16 C -0.556 4.556 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.529 5.529 20 Si 0.726 3.274 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.163 4.163 25 C -0.046 4.046 26 C 0.016 3.984 27 H 0.104 0.896 28 C -0.224 4.224 29 O -0.291 6.291 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.253 0.747 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.074 0.926 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -22.515 -3.273 0.473 22.756 hybrid contribution 1.376 0.005 -0.201 1.390 sum -21.139 -3.268 0.272 21.392 Atomic orbital electron populations 1.21877 0.93487 1.02836 1.02525 1.22942 0.95115 0.95754 0.84534 0.90732 1.23818 0.95950 1.01847 0.99140 1.22353 0.97051 0.86429 0.92496 0.87536 1.55620 1.60004 1.14002 1.56927 1.01673 0.73193 0.73431 0.72861 1.93567 1.80488 1.60756 1.60248 1.93578 1.85539 1.35878 1.80365 1.30272 1.22316 1.02908 1.23970 1.20767 0.92836 0.98332 0.92071 1.21258 0.96979 0.96080 1.02030 1.21128 0.95109 0.92901 0.88015 1.18545 0.87437 0.97343 0.96443 1.20962 0.94842 1.44972 0.94849 0.92295 1.25003 0.98504 0.94925 0.95690 1.69946 1.21203 1.43637 1.18135 0.86478 0.80620 0.78659 0.81652 1.20434 1.21006 1.19695 1.21246 0.93818 1.00529 1.00696 1.20777 0.97286 0.92825 0.93736 1.22951 0.86095 0.96860 0.92467 0.89563 1.22179 0.97040 1.02326 1.00846 1.88481 1.41697 1.64953 1.33995 0.91782 0.91091 0.91942 0.88635 0.89421 0.74744 0.85229 0.85291 0.94685 0.94690 0.92597 0.85310 0.85358 0.91774 0.91523 0.90765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.63 37.16 0.36 -0.63 16 2 C 0.07 0.61 4.07 -25.70 -0.10 0.50 16 3 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.17 -1.37 6.26 -24.48 -0.15 -1.53 16 5 C 0.13 1.13 3.08 -65.98 -0.20 0.93 16 6 H 0.11 0.98 7.18 -51.93 -0.37 0.60 16 7 N -1.11 -10.21 5.59 -3.24 -0.02 -10.23 16 8 S 2.70 35.07 5.66 -107.50 -0.61 34.46 16 9 O -0.96 -14.55 17.04 -57.17 -0.97 -15.52 16 10 O -0.96 -14.85 17.28 -57.17 -0.99 -15.84 16 11 C -0.70 -10.43 5.94 -39.59 -0.24 -10.67 16 12 C -0.02 -0.32 9.52 -39.58 -0.38 -0.70 16 13 C -0.14 -2.58 9.70 -39.58 -0.38 -2.96 16 14 C 0.03 0.57 5.07 -104.63 -0.53 0.04 16 15 C 0.04 0.93 5.11 -29.03 -0.15 0.79 16 16 C -0.52 -13.84 9.09 -34.44 -0.31 -14.16 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -25.25 13.29 55.43 0.74 -24.51 16 20 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 C -0.14 -2.54 9.70 -39.58 -0.38 -2.92 16 25 C -0.03 -0.41 9.00 -39.58 -0.36 -0.76 16 26 C 0.08 0.68 3.91 -26.00 -0.10 0.58 16 27 H 0.09 0.69 7.81 -51.93 -0.41 0.29 16 28 C -0.17 -1.57 9.44 37.16 0.35 -1.22 16 29 O -0.37 -3.74 10.70 -35.23 -0.38 -4.12 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.09 0.65 8.06 -51.93 -0.42 0.24 16 35 H 0.42 2.89 8.66 -34.47 -0.30 2.59 16 36 H 0.13 1.73 7.62 -52.48 -0.40 1.33 16 37 H 0.13 2.20 8.06 -52.49 -0.42 1.77 16 38 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 39 H 0.03 0.87 8.08 -51.93 -0.42 0.45 16 40 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.13 2.16 8.06 -52.48 -0.42 1.74 16 42 H 0.13 1.65 7.62 -52.49 -0.40 1.25 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 385.82 15.07 5.81 5.81 Total: -1.00 -32.48 385.82 -11.02 -43.50 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -6.90 Total: 1.69 kcal Atomic # 6 Polarization: -28.47 SS G_CDS: -2.68 Total: -31.15 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.72 Total: -34.74 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -2.34 Total: -35.49 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 35.07 SS G_CDS: -0.61 Total: 34.46 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.48 -11.02 -43.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885333336.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.015 kcal (2) G-P(sol) polarization free energy of solvation -32.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds