Wall clock time and date at job start Tue Mar 31 2020 23:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 110.27562 * 2 1 4 4 C 1.54946 * 110.39623 * 237.84674 * 2 1 3 5 5 C 1.55300 * 100.94395 * 204.60012 * 4 2 1 6 6 H 1.08995 * 111.02605 * 275.86510 * 5 4 2 7 7 N 1.46506 * 110.84434 * 152.32597 * 5 4 2 8 8 S 1.65593 * 119.99953 * 102.17094 * 7 5 4 9 9 O 1.42095 * 106.40147 * 311.45692 * 8 7 5 10 10 O 1.42104 * 106.39988 * 178.53612 * 8 7 5 11 11 C 1.76202 * 107.22068 * 64.99940 * 8 7 5 12 12 C 1.38231 * 120.00153 * 89.99521 * 11 8 7 13 13 C 1.38236 * 120.00242 * 180.02562 * 12 11 8 14 14 C 1.38233 * 119.99565 * 359.95900 * 13 12 11 15 15 C 1.50700 * 119.99980 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.46869 * 90.00014 * 15 14 13 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48501 * 109.47188 * 90.00793 * 20 18 16 22 22 H 1.48501 * 109.47085 * 210.00372 * 20 18 16 23 23 H 1.48498 * 109.47634 * 330.00608 * 20 18 16 24 24 C 1.38233 * 120.00375 * 0.27512 * 14 13 12 25 25 C 1.38235 * 119.99785 * 269.97868 * 11 8 7 26 26 C 1.54386 * 102.25140 * 34.13776 * 5 4 2 27 27 H 1.09002 * 109.82880 * 98.15700 * 26 5 4 28 28 C 1.53000 * 109.82673 * 219.03507 * 26 5 4 29 29 O 1.43232 * 107.58709 * 338.63906 * 26 5 4 30 30 H 1.08998 * 109.47094 * 299.36759 * 1 2 3 31 31 H 1.09003 * 109.46764 * 59.36562 * 1 2 3 32 32 H 1.08999 * 109.47359 * 179.36181 * 1 2 3 33 33 H 1.09003 * 111.12269 * 86.67580 * 4 2 1 34 34 H 1.09006 * 111.12404 * 322.52598 * 4 2 1 35 35 H 0.97003 * 119.99931 * 282.16387 * 7 5 4 36 36 H 1.08004 * 120.00009 * 359.97438 * 12 11 8 37 37 H 1.08000 * 120.00222 * 179.97438 * 13 12 11 38 38 H 1.09004 * 109.47210 * 330.00307 * 15 14 13 39 39 H 1.08994 * 109.47551 * 209.99960 * 15 14 13 40 40 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 41 41 H 1.08005 * 120.00620 * 179.72269 * 24 14 13 42 42 H 1.08000 * 120.00082 * 359.97438 * 25 11 8 43 43 H 1.09002 * 109.46657 * 60.00073 * 28 26 5 44 44 H 1.08997 * 109.46815 * 179.97438 * 28 26 5 45 45 H 1.08996 * 109.47634 * 300.00210 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0700 -0.7729 -1.2296 5 6 3.4722 -1.2002 -0.7167 6 1 4.2015 -0.4033 -0.8623 7 7 3.9135 -2.4338 -1.3724 8 16 5.0222 -2.3676 -2.6006 9 8 4.5680 -1.3634 -3.4975 10 8 5.2639 -3.7111 -2.9958 11 6 6.5305 -1.7731 -1.9105 12 6 7.4554 -2.6643 -1.3994 13 6 8.6384 -2.1978 -0.8574 14 6 8.8969 -0.8402 -0.8274 15 6 10.1863 -0.3316 -0.2361 16 6 11.2363 -0.2519 -1.3142 17 1 10.9940 -0.5403 -2.3264 18 6 12.5046 0.1951 -1.0096 19 7 12.7996 0.5467 0.2229 20 14 13.8039 0.3012 -2.3475 21 1 13.7526 1.6428 -2.9821 22 1 15.1469 0.0866 -1.7514 23 1 13.5451 -0.7415 -3.3727 24 6 7.9699 0.0513 -1.3341 25 6 6.7890 -0.4155 -1.8804 26 6 3.2124 -1.4395 0.7862 27 1 3.0649 -2.5035 0.9712 28 6 4.3999 -0.9302 1.6057 29 8 2.0286 -0.7157 1.1414 30 1 -0.3633 0.5040 0.8956 31 1 -0.3633 0.5237 -0.8843 32 1 -0.3634 -1.0276 -0.0114 33 1 2.1517 -0.1204 -2.0989 34 1 1.4506 -1.6423 -1.4502 35 1 3.5563 -3.2893 -1.0870 36 1 7.2533 -3.7250 -1.4227 37 1 9.3608 -2.8941 -0.4578 38 1 10.5205 -1.0123 0.5469 39 1 10.0255 0.6594 0.1883 40 1 13.6920 0.8608 0.4372 41 1 8.1698 1.1123 -1.3066 42 1 6.0667 0.2808 -2.2804 43 1 4.5325 0.1371 1.4285 44 1 4.2103 -1.1015 2.6653 45 1 5.3027 -1.4629 1.3070 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885333336.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:58 Heat of formation + Delta-G solvation = -133.990311 kcal Electronic energy + Delta-G solvation = -27636.560165 eV Core-core repulsion = 23744.300244 eV Total energy + Delta-G solvation = -3892.259922 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.88021 -40.23736 -38.37009 -37.00603 -36.08510 -35.59683 -33.61546 -33.32568 -31.97058 -31.48129 -29.26481 -29.20001 -25.60200 -24.81399 -23.76715 -22.61712 -22.46644 -21.76322 -20.67895 -19.12954 -18.64141 -18.49629 -17.64309 -17.41889 -16.86199 -16.67621 -16.08214 -15.98667 -15.63246 -15.31024 -15.06214 -14.89510 -14.63665 -14.45530 -14.08524 -13.91027 -13.79943 -13.48339 -13.42018 -13.40064 -13.26065 -13.18270 -13.07613 -12.84319 -12.69322 -12.67431 -12.64303 -12.34799 -12.11433 -12.08655 -12.03521 -11.77017 -11.68031 -11.42147 -10.65950 -10.59566 -10.39712 -9.96482 -9.95663 -8.27801 -6.40362 -0.68747 -0.07665 0.39473 1.37787 1.38297 1.49521 1.89619 2.33857 2.53184 2.72023 2.85538 3.05073 3.27663 3.47543 3.62163 3.83176 3.85939 3.96729 3.98259 4.15650 4.18958 4.24488 4.39543 4.45412 4.47544 4.48030 4.65430 4.72087 4.81086 4.87518 4.90509 4.93166 5.05601 5.09152 5.09653 5.24751 5.26093 5.26872 5.31501 5.33332 5.35154 5.66642 5.86492 5.91767 5.98181 6.09310 6.11605 6.71667 7.28799 8.82246 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017063 B = 0.002882 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.584139 B = 9712.289624 C =10543.698983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.069 3.931 3 H 0.077 0.923 4 C -0.166 4.166 5 C 0.118 3.882 6 H 0.106 0.894 7 N -1.090 6.090 8 S 2.725 3.275 9 O -0.976 6.976 10 O -0.982 6.982 11 C -0.701 4.701 12 C -0.017 4.017 13 C -0.154 4.154 14 C -0.001 4.001 15 C 0.048 3.952 16 C -0.533 4.533 17 H 0.054 0.946 18 C 0.010 3.990 19 N -0.925 5.925 20 Si 0.963 3.037 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.268 1.268 24 C -0.152 4.152 25 C -0.020 4.020 26 C 0.078 3.922 27 H 0.099 0.901 28 C -0.168 4.168 29 O -0.388 6.388 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.432 0.568 36 H 0.156 0.844 37 H 0.128 0.872 38 H 0.013 0.987 39 H 0.013 0.987 40 H 0.267 0.733 41 H 0.130 0.870 42 H 0.156 0.844 43 H 0.059 0.941 44 H 0.066 0.934 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.408 -3.891 -0.246 24.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.011 3.989 3 H 0.095 0.905 4 C -0.205 4.205 5 C 0.010 3.990 6 H 0.124 0.876 7 N -0.852 5.852 8 S 2.815 3.185 9 O -0.966 6.966 10 O -0.972 6.972 11 C -0.788 4.788 12 C -0.036 4.036 13 C -0.173 4.173 14 C -0.001 4.001 15 C 0.011 3.989 16 C -0.571 4.571 17 H 0.072 0.928 18 C -0.189 4.189 19 N -0.565 5.565 20 Si 0.787 3.213 21 H -0.197 1.197 22 H -0.204 1.204 23 H -0.192 1.192 24 C -0.171 4.171 25 C -0.039 4.039 26 C 0.018 3.982 27 H 0.117 0.883 28 C -0.225 4.225 29 O -0.308 6.308 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.270 0.730 36 H 0.173 0.827 37 H 0.146 0.854 38 H 0.031 0.969 39 H 0.032 0.968 40 H 0.076 0.924 41 H 0.147 0.853 42 H 0.174 0.826 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -24.435 -3.892 -0.858 24.758 hybrid contribution 1.822 0.181 0.250 1.848 sum -22.613 -3.711 -0.608 22.924 Atomic orbital electron populations 1.21882 0.92359 1.03093 1.03170 1.23099 0.96062 0.95727 0.83970 0.90464 1.23832 0.95212 1.02297 0.99159 1.22490 0.97778 0.86076 0.92653 0.87564 1.55225 1.58606 1.15082 1.56280 1.00836 0.72535 0.72354 0.72767 1.93551 1.80416 1.61336 1.61265 1.93554 1.85836 1.36769 1.81080 1.30745 1.23234 1.02687 1.22166 1.21008 0.91751 0.99811 0.90992 1.21297 0.98159 0.95212 1.02660 1.20801 0.94347 0.94332 0.90630 1.18263 0.89395 0.95777 0.95466 1.21291 0.95946 1.44609 0.95250 0.92802 1.25855 1.00691 0.94564 0.97821 1.70054 1.21839 1.44580 1.19984 0.85476 0.77992 0.78871 0.78934 1.19657 1.20376 1.19239 1.21289 0.94424 1.00370 1.01045 1.21031 0.96617 0.93669 0.92591 1.22952 0.85657 0.97438 0.92120 0.88333 1.22186 0.97222 1.02050 1.01085 1.88472 1.41914 1.65296 1.35091 0.91995 0.89608 0.91888 0.88271 0.88467 0.73028 0.82690 0.85370 0.96898 0.96822 0.92389 0.85254 0.82611 0.92203 0.91502 0.91205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.63 71.98 0.69 -0.94 16 2 C 0.07 0.98 4.07 31.26 0.13 1.10 16 3 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 4 C -0.17 -2.25 6.26 32.05 0.20 -2.05 16 5 C 0.12 1.84 3.08 46.25 0.14 1.99 16 6 H 0.11 1.69 7.18 -2.39 -0.02 1.67 16 7 N -1.09 -16.88 5.59 -164.15 -0.92 -17.80 16 8 S 2.72 63.32 5.66 -56.49 -0.32 63.00 16 9 O -0.98 -26.69 17.04 -128.00 -2.18 -28.87 16 10 O -0.98 -27.52 17.28 -128.00 -2.21 -29.73 16 11 C -0.70 -19.31 5.94 22.27 0.13 -19.18 16 12 C -0.02 -0.49 9.52 22.27 0.21 -0.28 16 13 C -0.15 -5.54 9.70 22.27 0.22 -5.32 16 14 C 0.00 -0.03 5.07 -19.87 -0.10 -0.13 16 15 C 0.05 2.41 5.11 29.10 0.15 2.56 16 16 C -0.53 -29.33 9.09 25.60 0.23 -29.09 16 17 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 18 C 0.01 0.54 5.46 84.66 0.46 1.00 16 19 N -0.93 -53.85 13.29 21.45 0.28 -53.56 16 20 Si 0.96 43.28 29.54 68.60 2.03 45.30 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 C -0.15 -5.39 9.70 22.27 0.22 -5.18 16 25 C -0.02 -0.58 9.00 22.27 0.20 -0.38 16 26 C 0.08 1.24 3.91 31.06 0.12 1.36 16 27 H 0.10 1.33 7.81 -2.39 -0.02 1.31 16 28 C -0.17 -2.99 9.44 71.98 0.68 -2.31 16 29 O -0.39 -7.11 10.70 -148.98 -1.59 -8.70 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.10 1.14 8.06 -2.38 -0.02 1.12 16 35 H 0.43 4.55 8.66 -96.75 -0.84 3.72 16 36 H 0.16 3.75 7.62 -2.91 -0.02 3.73 16 37 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 38 H 0.01 0.68 8.09 -2.38 -0.02 0.66 16 39 H 0.01 0.72 8.08 -2.39 -0.02 0.70 16 40 H 0.27 14.60 8.31 -92.70 -0.77 13.83 16 41 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 42 H 0.16 3.61 7.62 -2.91 -0.02 3.59 16 43 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -69.78 385.82 -1.08 -70.86 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.15 Total: 16.34 kcal Atomic # 6 Polarization: -60.53 SS G_CDS: 3.68 Total: -56.84 kcal Atomic # 7 Polarization: -70.73 SS G_CDS: -0.63 Total: -71.36 kcal Atomic # 8 Polarization: -61.32 SS G_CDS: -5.99 Total: -67.30 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: 63.32 SS G_CDS: -0.32 Total: 63.00 kcal Total: -69.78 -1.08 -70.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885333336.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.134 kcal (2) G-P(sol) polarization free energy of solvation -69.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds