Wall clock time and date at job start Tue Mar 31 2020 23:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 110.55382 * 2 1 4 4 C 1.55001 * 110.62120 * 237.11924 * 2 1 3 5 5 C 1.54804 * 102.09466 * 204.47657 * 4 2 1 6 6 H 1.09001 * 110.49213 * 139.68948 * 5 4 2 7 7 N 1.46507 * 110.48532 * 262.20425 * 5 4 2 8 8 S 1.65603 * 119.99681 * 263.54405 * 7 5 4 9 9 O 1.42100 * 106.40542 * 311.46354 * 8 7 5 10 10 O 1.42107 * 106.39938 * 178.53922 * 8 7 5 11 11 C 1.76198 * 107.21693 * 65.00176 * 8 7 5 12 12 C 1.38239 * 119.99857 * 89.99814 * 11 8 7 13 13 C 1.38235 * 120.00081 * 179.97438 * 12 11 8 14 14 C 1.38238 * 119.99756 * 359.97438 * 13 12 11 15 15 C 1.50706 * 120.00103 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47294 * 89.99178 * 15 14 13 17 17 H 1.08005 * 119.99819 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00046 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00192 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99979 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.47261 * 60.00310 * 20 18 16 23 23 H 1.48500 * 109.47454 * 300.00304 * 20 18 16 24 24 C 1.38234 * 120.00173 * 0.26598 * 14 13 12 25 25 C 1.38229 * 120.00131 * 269.97643 * 11 8 7 26 26 C 1.54101 * 104.19102 * 20.87827 * 5 4 2 27 27 H 1.09002 * 109.87964 * 242.61160 * 26 5 4 28 28 C 1.53002 * 109.87958 * 121.45349 * 26 5 4 29 29 O 1.43742 * 107.29068 * 2.03073 * 26 5 4 30 30 H 1.09002 * 109.46678 * 182.88209 * 1 2 3 31 31 H 1.08999 * 109.47286 * 302.87777 * 1 2 3 32 32 H 1.08995 * 109.47336 * 62.87848 * 1 2 3 33 33 H 1.08998 * 110.90660 * 86.27468 * 4 2 1 34 34 H 1.09000 * 110.93412 * 322.68779 * 4 2 1 35 35 H 0.97001 * 120.00162 * 83.55076 * 7 5 4 36 36 H 1.07996 * 120.00182 * 359.97438 * 12 11 8 37 37 H 1.08004 * 120.00311 * 179.97438 * 13 12 11 38 38 H 1.08998 * 109.46460 * 329.99739 * 15 14 13 39 39 H 1.08993 * 109.46894 * 209.99366 * 15 14 13 40 40 H 0.97001 * 119.99934 * 359.97438 * 19 18 16 41 41 H 1.08005 * 120.00155 * 179.72911 * 24 14 13 42 42 H 1.08001 * 120.00328 * 359.97438 * 25 11 8 43 43 H 1.09001 * 109.46583 * 60.00575 * 28 26 5 44 44 H 1.08993 * 109.47055 * 179.97438 * 28 26 5 45 45 H 1.08999 * 109.47098 * 300.00463 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0758 -0.7876 -1.2183 5 6 3.4794 -1.2157 -0.7253 6 1 3.6985 -2.2368 -1.0374 7 7 4.5025 -0.2962 -1.2296 8 16 5.3539 -0.6750 -2.5985 9 8 5.8052 -2.0123 -2.4332 10 8 6.2306 0.4168 -2.8408 11 6 4.2072 -0.6988 -3.9361 12 6 3.9611 0.4554 -4.6560 13 6 3.0619 0.4367 -5.7057 14 6 2.4091 -0.7363 -6.0358 15 6 1.4292 -0.7569 -7.1806 16 6 2.1547 -1.0972 -8.4569 17 1 3.2189 -1.2807 -8.4406 18 6 1.4597 -1.1754 -9.6451 19 7 0.1638 -0.9524 -9.6648 20 14 2.3589 -1.5980 -11.2269 21 1 1.3933 -1.6182 -12.3550 22 1 2.9933 -2.9341 -11.0939 23 1 3.4050 -0.5773 -11.4897 24 6 2.6515 -1.8892 -5.3128 25 6 3.5540 -1.8715 -4.2658 26 6 3.3840 -1.1266 0.8102 27 1 4.0853 -0.3799 1.1825 28 6 3.6935 -2.4905 1.4307 29 8 2.0385 -0.7370 1.1327 30 1 -0.3633 -1.0264 0.0517 31 1 -0.3634 0.5579 0.8630 32 1 -0.3634 0.4685 -0.9146 33 1 2.1509 -0.1446 -2.0952 34 1 1.4552 -1.6585 -1.4289 35 1 4.6812 0.5345 -0.7616 36 1 4.4714 1.3717 -4.3984 37 1 2.8693 1.3386 -6.2680 38 1 0.9636 0.2239 -7.2779 39 1 0.6614 -1.5062 -6.9882 40 1 -0.3032 -0.7333 -8.8434 41 1 2.1382 -2.8046 -5.5679 42 1 3.7468 -2.7734 -3.7038 43 1 4.7013 -2.7969 1.1502 44 1 3.6246 -2.4199 2.5161 45 1 2.9758 -3.2261 1.0677 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885333344.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:06 Heat of formation + Delta-G solvation = -114.892539 kcal Electronic energy + Delta-G solvation = -27806.587388 eV Core-core repulsion = 23915.155608 eV Total energy + Delta-G solvation = -3891.431780 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.22222 -38.95981 -37.26665 -35.89482 -35.21181 -34.05693 -33.00666 -31.58030 -30.88091 -30.71286 -28.51553 -27.15080 -24.11878 -23.59635 -22.52324 -21.90231 -21.35099 -21.18249 -19.53292 -18.03144 -17.68765 -17.16691 -16.87705 -16.10378 -15.82008 -15.31228 -15.15367 -14.96677 -14.47722 -14.10865 -13.79014 -13.63669 -13.48906 -13.32908 -13.24537 -13.12503 -12.62256 -12.44030 -12.36378 -12.24308 -12.19214 -12.09542 -12.03847 -11.85528 -11.68637 -11.47773 -11.43293 -11.04894 -10.94517 -10.91404 -10.61001 -10.29304 -10.09473 -10.00967 -9.72291 -9.30777 -8.72465 -8.53089 -8.36038 -6.55107 -4.28196 0.35732 1.18428 1.65520 2.87336 3.36427 3.36983 3.43204 3.56103 3.63033 3.98759 4.09385 4.28236 4.37393 4.42757 4.53721 4.65502 4.81780 4.91313 5.00969 5.06504 5.08054 5.10792 5.22324 5.25467 5.29592 5.46568 5.54468 5.55782 5.67765 5.71818 5.73225 5.76163 5.78812 5.87166 5.91092 6.09375 6.17755 6.36323 6.56311 6.66590 6.68469 6.71379 6.92181 7.24259 7.31983 7.88635 8.24614 8.65360 9.42968 10.84346 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015267 B = 0.003090 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.633514 B = 9060.299075 C =10122.431397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.074 3.926 3 H 0.071 0.929 4 C -0.173 4.173 5 C 0.119 3.881 6 H 0.112 0.888 7 N -1.112 6.112 8 S 2.697 3.303 9 O -0.962 6.962 10 O -0.963 6.963 11 C -0.702 4.702 12 C -0.020 4.020 13 C -0.145 4.145 14 C 0.033 3.967 15 C 0.027 3.973 16 C -0.598 4.598 17 H 0.053 0.947 18 C 0.021 3.979 19 N -0.906 5.906 20 Si 1.071 2.929 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.286 1.286 24 C -0.144 4.144 25 C -0.021 4.021 26 C 0.075 3.925 27 H 0.076 0.924 28 C -0.153 4.153 29 O -0.369 6.369 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.417 0.583 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.269 0.731 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.935 1.236 21.777 22.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.016 3.984 3 H 0.089 0.911 4 C -0.213 4.213 5 C 0.011 3.989 6 H 0.129 0.871 7 N -0.870 5.870 8 S 2.789 3.211 9 O -0.952 6.952 10 O -0.953 6.953 11 C -0.792 4.792 12 C -0.040 4.040 13 C -0.164 4.164 14 C 0.032 3.968 15 C -0.010 4.010 16 C -0.636 4.636 17 H 0.071 0.929 18 C -0.184 4.184 19 N -0.541 5.541 20 Si 0.898 3.102 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.212 1.212 24 C -0.163 4.163 25 C -0.041 4.041 26 C 0.015 3.985 27 H 0.094 0.906 28 C -0.211 4.211 29 O -0.288 6.288 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.251 0.749 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.080 0.920 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.480 0.611 20.224 20.723 hybrid contribution -0.259 0.777 1.177 1.434 sum 4.221 1.388 21.401 21.858 Atomic orbital electron populations 1.21783 0.92890 1.03168 1.02596 1.23108 0.95428 0.95218 0.84597 0.91100 1.23793 0.95866 1.02170 0.99425 1.22250 0.87660 0.94084 0.94934 0.87052 1.55733 1.54296 1.32275 1.44675 1.01636 0.73239 0.73519 0.72679 1.93565 1.78713 1.37226 1.85662 1.93579 1.62075 1.54773 1.84911 1.30299 1.24378 1.01227 1.23299 1.20757 0.94022 0.95821 0.93371 1.21217 0.98211 0.99071 0.97881 1.20867 0.92348 0.91795 0.91755 1.18650 0.93277 0.97785 0.91272 1.21827 0.96282 1.53246 0.92263 0.92905 1.25917 0.96166 0.94051 1.02258 1.70807 1.08418 1.43350 1.31544 0.83508 0.74994 0.76629 0.75064 1.20566 1.21220 1.21236 1.21207 0.99907 0.98901 0.96298 1.20754 0.92305 0.95302 0.95728 1.22943 0.85350 0.97781 0.92424 0.90572 1.21951 1.02439 0.95079 1.01635 1.88924 1.27299 1.73462 1.39128 0.91588 0.91915 0.90828 0.88823 0.89052 0.74879 0.85174 0.85428 0.95679 0.95658 0.92031 0.85425 0.85266 0.90669 0.91525 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.66 37.15 0.36 -0.80 16 2 C 0.07 0.64 3.98 -25.68 -0.10 0.54 16 3 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 4 C -0.17 -1.56 6.31 -24.72 -0.16 -1.72 16 5 C 0.12 1.06 3.33 -66.40 -0.22 0.84 16 6 H 0.11 1.00 7.14 -51.93 -0.37 0.63 16 7 N -1.11 -10.18 5.49 -3.59 -0.02 -10.20 16 8 S 2.70 34.94 5.73 -107.50 -0.62 34.33 16 9 O -0.96 -14.62 16.66 -57.17 -0.95 -15.57 16 10 O -0.96 -14.81 17.28 -57.17 -0.99 -15.79 16 11 C -0.70 -10.31 5.57 -39.58 -0.22 -10.53 16 12 C -0.02 -0.31 9.52 -39.58 -0.38 -0.69 16 13 C -0.14 -2.59 9.70 -39.58 -0.38 -2.98 16 14 C 0.03 0.65 5.07 -104.62 -0.53 0.12 16 15 C 0.03 0.64 4.42 -29.03 -0.13 0.51 16 16 C -0.60 -16.21 9.09 -34.44 -0.31 -16.52 16 17 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 18 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 19 N -0.91 -26.39 13.65 55.43 0.76 -25.63 16 20 Si 1.07 24.49 29.90 -169.99 -5.08 19.41 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.28 7.11 56.52 0.40 -5.87 16 23 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 24 C -0.14 -2.55 9.70 -39.58 -0.38 -2.94 16 25 C -0.02 -0.33 9.52 -39.58 -0.38 -0.70 16 26 C 0.07 0.63 3.84 -26.15 -0.10 0.53 16 27 H 0.08 0.57 7.72 -51.93 -0.40 0.17 16 28 C -0.15 -1.15 9.36 37.16 0.35 -0.80 16 29 O -0.37 -3.65 10.89 -35.23 -0.38 -4.03 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.90 7.68 -51.93 -0.40 0.50 16 34 H 0.09 0.80 8.06 -51.93 -0.42 0.38 16 35 H 0.42 2.90 8.60 -34.47 -0.30 2.60 16 36 H 0.13 1.73 7.62 -52.49 -0.40 1.33 16 37 H 0.13 2.20 8.06 -52.48 -0.42 1.77 16 38 H 0.03 0.61 7.95 -51.93 -0.41 0.20 16 39 H 0.03 0.62 7.95 -51.93 -0.41 0.20 16 40 H 0.27 7.72 7.22 -40.82 -0.29 7.42 16 41 H 0.13 2.17 8.06 -52.48 -0.42 1.75 16 42 H 0.13 1.67 7.62 -52.49 -0.40 1.27 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 383.87 15.07 5.78 5.78 Total: -1.00 -33.24 383.87 -11.00 -44.24 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.81 Total: 2.13 kcal Atomic # 6 Polarization: -31.98 SS G_CDS: -2.68 Total: -34.67 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.74 Total: -35.83 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -2.32 Total: -35.39 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -5.08 Total: 19.41 kcal Atomic # 16 Polarization: 34.94 SS G_CDS: -0.62 Total: 34.33 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.24 -11.00 -44.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885333344.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.656 kcal (2) G-P(sol) polarization free energy of solvation -33.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds