Wall clock time and date at job start Tue Mar 31 2020 23:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 110.55382 * 2 1 4 4 C 1.55001 * 110.62120 * 237.11924 * 2 1 3 5 5 C 1.54804 * 102.09466 * 204.47657 * 4 2 1 6 6 H 1.09001 * 110.49213 * 139.68948 * 5 4 2 7 7 N 1.46507 * 110.48532 * 262.20425 * 5 4 2 8 8 S 1.65603 * 119.99681 * 263.54405 * 7 5 4 9 9 O 1.42100 * 106.40542 * 311.46354 * 8 7 5 10 10 O 1.42107 * 106.39938 * 178.53922 * 8 7 5 11 11 C 1.76198 * 107.21693 * 65.00176 * 8 7 5 12 12 C 1.38239 * 119.99857 * 89.99814 * 11 8 7 13 13 C 1.38235 * 120.00081 * 179.97438 * 12 11 8 14 14 C 1.38238 * 119.99756 * 359.97438 * 13 12 11 15 15 C 1.50706 * 120.00103 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47294 * 89.99178 * 15 14 13 17 17 H 1.08005 * 119.99819 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00046 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00192 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99979 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.47261 * 60.00310 * 20 18 16 23 23 H 1.48500 * 109.47454 * 300.00304 * 20 18 16 24 24 C 1.38234 * 120.00173 * 0.26598 * 14 13 12 25 25 C 1.38229 * 120.00131 * 269.97643 * 11 8 7 26 26 C 1.54101 * 104.19102 * 20.87827 * 5 4 2 27 27 H 1.09002 * 109.87964 * 242.61160 * 26 5 4 28 28 C 1.53002 * 109.87958 * 121.45349 * 26 5 4 29 29 O 1.43742 * 107.29068 * 2.03073 * 26 5 4 30 30 H 1.09002 * 109.46678 * 182.88209 * 1 2 3 31 31 H 1.08999 * 109.47286 * 302.87777 * 1 2 3 32 32 H 1.08995 * 109.47336 * 62.87848 * 1 2 3 33 33 H 1.08998 * 110.90660 * 86.27468 * 4 2 1 34 34 H 1.09000 * 110.93412 * 322.68779 * 4 2 1 35 35 H 0.97001 * 120.00162 * 83.55076 * 7 5 4 36 36 H 1.07996 * 120.00182 * 359.97438 * 12 11 8 37 37 H 1.08004 * 120.00311 * 179.97438 * 13 12 11 38 38 H 1.08998 * 109.46460 * 329.99739 * 15 14 13 39 39 H 1.08993 * 109.46894 * 209.99366 * 15 14 13 40 40 H 0.97001 * 119.99934 * 359.97438 * 19 18 16 41 41 H 1.08005 * 120.00155 * 179.72911 * 24 14 13 42 42 H 1.08001 * 120.00328 * 359.97438 * 25 11 8 43 43 H 1.09001 * 109.46583 * 60.00575 * 28 26 5 44 44 H 1.08993 * 109.47055 * 179.97438 * 28 26 5 45 45 H 1.08999 * 109.47098 * 300.00463 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0758 -0.7876 -1.2183 5 6 3.4794 -1.2157 -0.7253 6 1 3.6985 -2.2368 -1.0374 7 7 4.5025 -0.2962 -1.2296 8 16 5.3539 -0.6750 -2.5985 9 8 5.8052 -2.0123 -2.4332 10 8 6.2306 0.4168 -2.8408 11 6 4.2072 -0.6988 -3.9361 12 6 3.9611 0.4554 -4.6560 13 6 3.0619 0.4367 -5.7057 14 6 2.4091 -0.7363 -6.0358 15 6 1.4292 -0.7569 -7.1806 16 6 2.1547 -1.0972 -8.4569 17 1 3.2189 -1.2807 -8.4406 18 6 1.4597 -1.1754 -9.6451 19 7 0.1638 -0.9524 -9.6648 20 14 2.3589 -1.5980 -11.2269 21 1 1.3933 -1.6182 -12.3550 22 1 2.9933 -2.9341 -11.0939 23 1 3.4050 -0.5773 -11.4897 24 6 2.6515 -1.8892 -5.3128 25 6 3.5540 -1.8715 -4.2658 26 6 3.3840 -1.1266 0.8102 27 1 4.0853 -0.3799 1.1825 28 6 3.6935 -2.4905 1.4307 29 8 2.0385 -0.7370 1.1327 30 1 -0.3633 -1.0264 0.0517 31 1 -0.3634 0.5579 0.8630 32 1 -0.3634 0.4685 -0.9146 33 1 2.1509 -0.1446 -2.0952 34 1 1.4552 -1.6585 -1.4289 35 1 4.6812 0.5345 -0.7616 36 1 4.4714 1.3717 -4.3984 37 1 2.8693 1.3386 -6.2680 38 1 0.9636 0.2239 -7.2779 39 1 0.6614 -1.5062 -6.9882 40 1 -0.3032 -0.7333 -8.8434 41 1 2.1382 -2.8046 -5.5679 42 1 3.7468 -2.7734 -3.7038 43 1 4.7013 -2.7969 1.1502 44 1 3.6246 -2.4199 2.5161 45 1 2.9758 -3.2261 1.0677 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885333344.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:05 Heat of formation + Delta-G solvation = -136.974671 kcal Electronic energy + Delta-G solvation = -27807.544941 eV Core-core repulsion = 23915.155608 eV Total energy + Delta-G solvation = -3892.389333 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.92224 -40.32659 -38.41469 -37.04881 -36.04100 -35.92653 -33.65556 -33.25302 -32.04260 -31.58005 -29.20018 -28.89902 -25.52447 -24.77772 -23.83066 -22.79305 -22.52695 -22.03812 -20.56588 -19.21804 -18.99193 -18.56598 -17.99584 -16.92892 -16.74215 -16.52860 -16.16643 -15.94839 -15.68212 -15.57690 -15.47574 -15.06508 -14.54397 -14.34951 -14.15005 -13.88018 -13.82152 -13.57915 -13.55111 -13.40832 -13.30539 -13.23481 -13.05623 -12.84579 -12.79129 -12.56653 -12.52477 -12.24188 -12.14587 -12.12358 -11.97925 -11.72911 -11.63292 -11.14293 -10.71769 -10.63601 -10.52943 -10.03427 -9.97703 -8.74662 -6.48931 -0.72204 -0.14532 0.32401 1.50636 1.57099 1.77352 1.87955 2.42653 2.53946 2.71097 2.80645 3.07632 3.19782 3.49458 3.61561 3.78522 3.85705 3.90970 4.00477 4.01842 4.11641 4.22035 4.38255 4.39251 4.40576 4.42781 4.61238 4.68800 4.71429 4.77462 4.84430 4.93132 4.96058 5.02145 5.04596 5.09073 5.09903 5.14114 5.23104 5.26085 5.32207 5.72655 5.77877 5.89295 5.90614 6.03033 6.07316 6.47301 7.30314 8.64678 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015267 B = 0.003090 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.633514 B = 9060.299075 C =10122.431397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.072 3.928 3 H 0.080 0.920 4 C -0.175 4.175 5 C 0.115 3.885 6 H 0.115 0.885 7 N -1.094 6.094 8 S 2.725 3.275 9 O -0.978 6.978 10 O -0.982 6.982 11 C -0.697 4.697 12 C -0.015 4.015 13 C -0.155 4.155 14 C 0.002 3.998 15 C 0.033 3.967 16 C -0.609 4.609 17 H 0.045 0.955 18 C -0.029 4.029 19 N -0.931 5.931 20 Si 1.114 2.886 21 H -0.280 1.280 22 H -0.270 1.270 23 H -0.271 1.271 24 C -0.153 4.153 25 C -0.014 4.014 26 C 0.073 3.927 27 H 0.089 0.911 28 C -0.155 4.155 29 O -0.383 6.383 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.430 0.570 36 H 0.156 0.844 37 H 0.126 0.874 38 H 0.009 0.991 39 H 0.010 0.990 40 H 0.259 0.741 41 H 0.127 0.873 42 H 0.156 0.844 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.679 1.170 23.380 24.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.015 3.985 3 H 0.098 0.902 4 C -0.214 4.214 5 C 0.007 3.993 6 H 0.133 0.867 7 N -0.856 5.856 8 S 2.815 3.185 9 O -0.968 6.968 10 O -0.972 6.972 11 C -0.784 4.784 12 C -0.034 4.034 13 C -0.174 4.174 14 C 0.001 3.999 15 C -0.004 4.004 16 C -0.647 4.647 17 H 0.064 0.936 18 C -0.227 4.227 19 N -0.568 5.568 20 Si 0.935 3.065 21 H -0.206 1.206 22 H -0.195 1.195 23 H -0.196 1.196 24 C -0.171 4.171 25 C -0.033 4.033 26 C 0.014 3.986 27 H 0.107 0.893 28 C -0.212 4.212 29 O -0.303 6.303 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.268 0.732 36 H 0.174 0.826 37 H 0.144 0.856 38 H 0.027 0.973 39 H 0.028 0.972 40 H 0.068 0.932 41 H 0.145 0.855 42 H 0.174 0.826 43 H 0.100 0.900 44 H 0.090 0.910 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.218 0.559 21.834 22.709 hybrid contribution -0.782 0.813 0.856 1.416 sum 5.436 1.372 22.690 23.373 Atomic orbital electron populations 1.21792 0.92636 1.03050 1.02979 1.23189 0.95753 0.95479 0.84100 0.90217 1.23795 0.96027 1.02213 0.99384 1.22380 0.87258 0.94055 0.95566 0.86716 1.55354 1.54011 1.33102 1.43112 1.00809 0.72532 0.72644 0.72466 1.93549 1.79040 1.38321 1.85876 1.93556 1.62881 1.55362 1.85416 1.30754 1.23445 1.00653 1.23561 1.20991 0.93034 0.97186 0.92170 1.21252 0.98877 0.98334 0.98900 1.20584 0.93385 0.93819 0.92078 1.18423 0.93712 0.96109 0.92182 1.22163 0.96114 1.52510 0.93897 0.93630 1.27331 0.96202 0.93436 1.05772 1.70920 1.09383 1.45389 1.31085 0.82958 0.74389 0.77544 0.71562 1.20555 1.19534 1.19601 1.21245 1.00760 0.98141 0.96993 1.20994 0.91019 0.96572 0.94692 1.23044 0.85087 0.98675 0.91802 0.89288 1.21982 1.02779 0.94528 1.01940 1.88919 1.28031 1.73719 1.39594 0.91979 0.91513 0.90481 0.89379 0.89003 0.73206 0.82641 0.85601 0.97304 0.97197 0.93153 0.85480 0.82601 0.89970 0.91030 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.66 71.98 0.69 -1.46 16 2 C 0.07 1.12 3.98 31.28 0.12 1.24 16 3 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 4 C -0.17 -2.82 6.31 31.89 0.20 -2.62 16 5 C 0.12 1.76 3.33 45.98 0.15 1.91 16 6 H 0.11 1.73 7.14 -2.39 -0.02 1.71 16 7 N -1.09 -16.73 5.49 -165.27 -0.91 -17.63 16 8 S 2.73 62.87 5.73 -56.49 -0.32 62.54 16 9 O -0.98 -26.84 16.66 -128.00 -2.13 -28.97 16 10 O -0.98 -27.35 17.28 -128.00 -2.21 -29.56 16 11 C -0.70 -18.92 5.57 22.27 0.12 -18.80 16 12 C -0.01 -0.43 9.52 22.27 0.21 -0.22 16 13 C -0.15 -5.52 9.70 22.27 0.22 -5.31 16 14 C 0.00 0.07 5.07 -19.86 -0.10 -0.03 16 15 C 0.03 1.62 4.42 29.10 0.13 1.75 16 16 C -0.61 -33.83 9.09 25.60 0.23 -33.60 16 17 H 0.05 2.54 7.74 -2.91 -0.02 2.52 16 18 C -0.03 -1.62 5.46 84.65 0.46 -1.16 16 19 N -0.93 -55.72 13.65 21.45 0.29 -55.42 16 20 Si 1.11 49.31 29.90 68.60 2.05 51.36 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 22 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 24 C -0.15 -5.38 9.70 22.27 0.22 -5.16 16 25 C -0.01 -0.39 9.52 22.27 0.21 -0.18 16 26 C 0.07 1.05 3.84 30.97 0.12 1.16 16 27 H 0.09 1.04 7.72 -2.39 -0.02 1.03 16 28 C -0.15 -1.96 9.36 71.98 0.67 -1.28 16 29 O -0.38 -6.78 10.89 -148.98 -1.62 -8.40 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.09 1.53 7.68 -2.39 -0.02 1.51 16 34 H 0.09 1.48 8.06 -2.39 -0.02 1.46 16 35 H 0.43 4.54 8.60 -96.74 -0.83 3.71 16 36 H 0.16 3.71 7.62 -2.91 -0.02 3.69 16 37 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 38 H 0.01 0.45 7.95 -2.39 -0.02 0.43 16 39 H 0.01 0.51 7.95 -2.39 -0.02 0.49 16 40 H 0.26 15.50 7.22 -92.71 -0.67 14.83 16 41 H 0.13 4.38 8.06 -2.91 -0.02 4.35 16 42 H 0.16 3.61 7.62 -2.91 -0.02 3.58 16 43 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 45 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -71.34 383.87 -0.93 -72.27 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.26 Total: 17.57 kcal Atomic # 6 Polarization: -67.42 SS G_CDS: 3.67 Total: -63.75 kcal Atomic # 7 Polarization: -72.44 SS G_CDS: -0.62 Total: -73.06 kcal Atomic # 8 Polarization: -60.97 SS G_CDS: -5.97 Total: -66.93 kcal Atomic # 14 Polarization: 49.31 SS G_CDS: 2.05 Total: 51.36 kcal Atomic # 16 Polarization: 62.87 SS G_CDS: -0.32 Total: 62.54 kcal Total: -71.34 -0.93 -72.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885333344.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.709 kcal (2) G-P(sol) polarization free energy of solvation -71.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds