Wall clock time and date at job start Tue Mar 31 2020 23:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 110.41946 * 2 1 4 4 C 1.54792 * 110.39113 * 237.76384 * 2 1 3 5 5 C 1.54515 * 103.91176 * 217.24878 * 4 2 1 6 6 H 1.08999 * 110.51377 * 241.18533 * 5 4 2 7 7 N 1.46505 * 110.51076 * 118.61053 * 5 4 2 8 8 S 1.65597 * 119.99891 * 98.30391 * 7 5 4 9 9 O 1.42094 * 106.40401 * 311.46362 * 8 7 5 10 10 O 1.42105 * 106.40091 * 178.53924 * 8 7 5 11 11 C 1.76202 * 107.21576 * 65.00328 * 8 7 5 12 12 C 1.38230 * 120.00315 * 90.00116 * 11 8 7 13 13 C 1.38240 * 120.00152 * 180.02562 * 12 11 8 14 14 C 1.38233 * 119.99899 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00136 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46812 * 89.99940 * 15 14 13 17 17 H 1.07999 * 120.00803 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99889 * 180.02562 * 16 15 14 19 19 N 1.31520 * 120.00186 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00030 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 89.99863 * 20 18 16 22 22 H 1.48503 * 109.47261 * 330.00044 * 20 18 16 23 23 H 1.48500 * 109.47454 * 210.00037 * 20 18 16 24 24 C 1.38235 * 120.00004 * 0.25588 * 14 13 12 25 25 C 1.38240 * 120.00140 * 359.47385 * 24 14 13 26 26 C 1.54477 * 104.18217 * 359.89806 * 5 4 2 27 27 H 1.09002 * 110.37441 * 265.10231 * 26 5 4 28 28 C 1.53008 * 110.37274 * 142.88126 * 26 5 4 29 29 O 1.44422 * 104.80887 * 24.04521 * 26 5 4 30 30 H 1.09007 * 109.46853 * 299.14613 * 1 2 3 31 31 H 1.08995 * 109.47061 * 59.14595 * 1 2 3 32 32 H 1.08994 * 109.46832 * 179.15140 * 1 2 3 33 33 H 1.08999 * 110.61327 * 98.63786 * 4 2 1 34 34 H 1.08998 * 110.55405 * 335.82923 * 4 2 1 35 35 H 0.97004 * 119.99604 * 278.30684 * 7 5 4 36 36 H 1.07998 * 120.00196 * 359.97349 * 12 11 8 37 37 H 1.07998 * 119.99795 * 179.97438 * 13 12 11 38 38 H 1.09004 * 109.47035 * 330.00312 * 15 14 13 39 39 H 1.08997 * 109.47667 * 209.99981 * 15 14 13 40 40 H 0.96998 * 120.00124 * 180.02562 * 19 18 16 41 41 H 1.07997 * 119.99995 * 179.72713 * 24 14 13 42 42 H 1.07998 * 119.99999 * 180.27334 * 25 24 14 43 43 H 1.09003 * 109.47059 * 59.99437 * 28 26 5 44 44 H 1.09000 * 109.47144 * 180.02562 * 28 26 5 45 45 H 1.09000 * 109.46798 * 299.99646 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0216 0.0000 4 6 2.0694 -0.7739 -1.2273 5 6 3.3179 -1.5057 -0.6857 6 1 4.2121 -1.1794 -1.2167 7 7 3.1536 -2.9567 -0.8029 8 16 3.8315 -3.7664 -2.0786 9 8 3.4722 -3.0446 -3.2486 10 8 3.5262 -5.1413 -1.8890 11 6 5.5801 -3.6186 -1.9201 12 6 6.2919 -4.5648 -1.2068 13 6 7.6638 -4.4485 -1.0821 14 6 8.3238 -3.3863 -1.6710 15 6 9.8192 -3.2591 -1.5346 16 6 10.4907 -3.9814 -2.6741 17 1 9.8944 -4.4820 -3.4225 18 6 11.8666 -4.0031 -2.7612 19 7 12.4527 -4.6330 -3.7559 20 14 12.8982 -3.1379 -1.4664 21 1 13.2013 -4.0832 -0.3619 22 1 12.1462 -1.9749 -0.9302 23 1 14.1672 -2.6675 -2.0776 24 6 7.6113 -2.4374 -2.3803 25 6 6.2402 -2.5567 -2.5098 26 6 3.3873 -1.0870 0.7996 27 1 4.0540 -0.2335 0.9225 28 6 3.8602 -2.2593 1.6619 29 8 2.0328 -0.7235 1.1444 30 1 -0.3633 0.5005 0.8976 31 1 -0.3633 0.5270 -0.8822 32 1 -0.3633 -1.0275 -0.0152 33 1 2.3467 -0.0842 -2.0244 34 1 1.3299 -1.4918 -1.5822 35 1 2.6476 -3.4432 -0.1333 36 1 5.7763 -5.3945 -0.7463 37 1 8.2198 -5.1876 -0.5244 38 1 10.1363 -3.6984 -0.5887 39 1 10.0979 -2.2057 -1.5575 40 1 13.4206 -4.6485 -3.8170 41 1 8.1264 -1.6051 -2.8367 42 1 5.6842 -1.8178 -3.0677 43 1 4.8511 -2.5744 1.3348 44 1 3.9034 -1.9483 2.7057 45 1 3.1624 -3.0903 1.5593 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885333346.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:10 Heat of formation + Delta-G solvation = -102.407906 kcal Electronic energy + Delta-G solvation = -27704.997333 eV Core-core repulsion = 23814.106927 eV Total energy + Delta-G solvation = -3890.890406 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.22001 -38.94973 -37.20122 -35.82782 -35.26679 -33.72426 -32.98073 -31.78330 -30.70716 -30.42684 -28.91419 -28.01848 -24.26240 -23.55265 -22.49623 -21.69225 -21.10622 -20.79817 -19.70860 -18.14968 -17.49237 -16.94438 -16.69862 -16.34387 -15.83649 -15.49277 -15.13375 -15.08389 -14.44204 -14.33735 -13.98599 -13.71990 -13.46678 -13.23448 -13.04516 -12.85774 -12.72344 -12.65153 -12.28737 -12.21240 -12.11312 -12.00083 -11.93642 -11.84990 -11.81604 -11.43963 -11.33244 -11.08128 -11.00662 -10.96573 -10.56974 -10.36431 -10.25991 -10.08971 -9.64284 -9.55849 -8.73751 -8.69390 -8.50448 -6.21422 -4.23235 0.41081 1.19807 1.67025 2.95232 3.17723 3.26353 3.26741 3.43274 3.66988 3.99837 4.23141 4.26376 4.27715 4.36126 4.55146 4.64586 4.83305 4.87803 4.97384 5.04793 5.09115 5.12551 5.15078 5.21389 5.25179 5.44994 5.51904 5.52326 5.67727 5.68952 5.72691 5.76891 5.79933 5.86796 5.91603 6.09966 6.18481 6.38114 6.57034 6.64586 6.65173 6.73774 6.77178 7.23470 7.25349 7.50139 8.31257 8.82095 9.36627 10.91050 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018142 B = 0.002881 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.992115 B = 9715.290742 C =10388.053507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.069 3.931 3 H 0.071 0.929 4 C -0.166 4.166 5 C 0.125 3.875 6 H 0.103 0.897 7 N -1.108 6.108 8 S 2.694 3.306 9 O -0.961 6.961 10 O -0.963 6.963 11 C -0.701 4.701 12 C -0.020 4.020 13 C -0.142 4.142 14 C 0.032 3.968 15 C 0.006 3.994 16 C -0.521 4.521 17 H 0.075 0.925 18 C 0.072 3.928 19 N -0.894 5.894 20 Si 0.879 3.121 21 H -0.275 1.275 22 H -0.265 1.265 23 H -0.285 1.285 24 C -0.142 4.142 25 C -0.026 4.026 26 C 0.068 3.932 27 H 0.082 0.918 28 C -0.146 4.146 29 O -0.367 6.367 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.419 0.581 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.030 0.970 39 H 0.034 0.966 40 H 0.267 0.733 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.205 9.523 10.141 25.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.011 3.989 3 H 0.089 0.911 4 C -0.206 4.206 5 C 0.017 3.983 6 H 0.121 0.879 7 N -0.868 5.868 8 S 2.787 3.213 9 O -0.951 6.951 10 O -0.954 6.954 11 C -0.790 4.790 12 C -0.039 4.039 13 C -0.161 4.161 14 C 0.032 3.968 15 C -0.031 4.031 16 C -0.558 4.558 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.531 5.531 20 Si 0.706 3.294 21 H -0.200 1.200 22 H -0.189 1.189 23 H -0.211 1.211 24 C -0.161 4.161 25 C -0.046 4.046 26 C 0.009 3.991 27 H 0.100 0.900 28 C -0.204 4.204 29 O -0.286 6.286 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.255 0.745 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.048 0.952 39 H 0.052 0.948 40 H 0.077 0.923 41 H 0.148 0.852 42 H 0.148 0.852 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.509 9.075 9.452 25.186 hybrid contribution 1.393 0.385 0.848 1.676 sum -20.116 9.459 10.300 24.500 Atomic orbital electron populations 1.21799 0.93103 1.03002 1.02445 1.23048 0.95467 0.95393 0.84962 0.91116 1.23615 0.98045 1.00437 0.98482 1.22095 0.98886 0.79859 0.97476 0.87893 1.55747 1.69094 1.15676 1.46237 1.01730 0.73900 0.72801 0.72902 1.93570 1.82388 1.73702 1.45392 1.93579 1.84236 1.31893 1.85673 1.30362 1.24958 1.07049 1.16666 1.20771 0.94765 0.95189 0.93199 1.21233 0.93700 0.98980 1.02207 1.20705 0.97656 0.90550 0.87910 1.18987 0.87095 0.98438 0.98586 1.20811 0.91690 1.34253 1.09094 0.90677 1.24992 0.97731 0.94787 0.95530 1.69888 1.10200 1.42229 1.30809 0.86788 0.80033 0.80600 0.81970 1.20028 1.18941 1.21058 1.21218 0.93373 1.00761 1.00726 1.20785 0.95244 0.94610 0.93935 1.23225 0.85153 0.98033 0.92731 0.90042 1.21772 1.01861 0.97015 0.99707 1.89175 1.26781 1.74553 1.38133 0.91895 0.91050 0.91750 0.89268 0.89263 0.74468 0.85075 0.85210 0.95233 0.94808 0.92342 0.85229 0.85166 0.90406 0.91651 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.53 37.16 0.35 -0.59 16 2 C 0.07 0.52 3.93 -25.79 -0.10 0.42 16 3 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 4 C -0.17 -1.33 6.44 -24.99 -0.16 -1.49 16 5 C 0.13 1.07 3.50 -66.36 -0.23 0.84 16 6 H 0.10 0.82 7.38 -51.93 -0.38 0.44 16 7 N -1.11 -10.39 4.68 -3.55 -0.02 -10.41 16 8 S 2.69 35.11 5.66 -107.50 -0.61 34.50 16 9 O -0.96 -14.61 17.04 -57.17 -0.97 -15.58 16 10 O -0.96 -15.04 17.28 -57.17 -0.99 -16.03 16 11 C -0.70 -10.21 5.87 -39.58 -0.23 -10.44 16 12 C -0.02 -0.30 9.52 -39.58 -0.38 -0.68 16 13 C -0.14 -2.46 9.70 -39.58 -0.38 -2.85 16 14 C 0.03 0.62 5.07 -104.63 -0.53 0.09 16 15 C 0.01 0.13 4.17 -29.04 -0.12 0.01 16 16 C -0.52 -14.10 9.65 -34.44 -0.33 -14.43 16 17 H 0.08 2.25 7.98 -52.49 -0.42 1.84 16 18 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 19 N -0.89 -26.55 13.96 55.43 0.77 -25.78 16 20 Si 0.88 20.35 27.47 -169.99 -4.67 15.68 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 C -0.14 -2.43 9.70 -39.58 -0.38 -2.81 16 25 C -0.03 -0.39 8.96 -39.58 -0.35 -0.75 16 26 C 0.07 0.55 3.88 -25.95 -0.10 0.45 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 28 C -0.15 -1.14 8.92 37.16 0.33 -0.81 16 29 O -0.37 -3.44 11.04 -35.23 -0.39 -3.83 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.76 7.69 -51.93 -0.40 0.36 16 35 H 0.42 3.31 7.07 -34.47 -0.24 3.06 16 36 H 0.13 1.72 7.62 -52.49 -0.40 1.32 16 37 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16 38 H 0.03 0.63 7.51 -51.93 -0.39 0.24 16 39 H 0.03 0.73 7.14 -51.93 -0.37 0.36 16 40 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.13 2.08 8.06 -52.49 -0.42 1.65 16 42 H 0.13 1.63 7.62 -52.49 -0.40 1.23 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.49 6.42 -51.93 -0.33 0.15 16 LS Contribution 378.19 15.07 5.70 5.70 Total: -1.00 -33.72 378.19 -10.63 -44.35 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.73 Total: 2.52 kcal Atomic # 6 Polarization: -28.40 SS G_CDS: -2.72 Total: -31.12 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.76 Total: -36.19 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -2.35 Total: -35.43 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.67 Total: 15.68 kcal Atomic # 16 Polarization: 35.11 SS G_CDS: -0.61 Total: 34.50 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.72 -10.63 -44.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885333346.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.058 kcal (2) G-P(sol) polarization free energy of solvation -33.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds