Wall clock time and date at job start Tue Mar 31 2020 23:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 110.41946 * 2 1 4 4 C 1.54792 * 110.39113 * 237.76384 * 2 1 3 5 5 C 1.54515 * 103.91176 * 217.24878 * 4 2 1 6 6 H 1.08999 * 110.51377 * 241.18533 * 5 4 2 7 7 N 1.46505 * 110.51076 * 118.61053 * 5 4 2 8 8 S 1.65597 * 119.99891 * 98.30391 * 7 5 4 9 9 O 1.42094 * 106.40401 * 311.46362 * 8 7 5 10 10 O 1.42105 * 106.40091 * 178.53924 * 8 7 5 11 11 C 1.76202 * 107.21576 * 65.00328 * 8 7 5 12 12 C 1.38230 * 120.00315 * 90.00116 * 11 8 7 13 13 C 1.38240 * 120.00152 * 180.02562 * 12 11 8 14 14 C 1.38233 * 119.99899 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00136 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46812 * 89.99940 * 15 14 13 17 17 H 1.07999 * 120.00803 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99889 * 180.02562 * 16 15 14 19 19 N 1.31520 * 120.00186 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00030 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 89.99863 * 20 18 16 22 22 H 1.48503 * 109.47261 * 330.00044 * 20 18 16 23 23 H 1.48500 * 109.47454 * 210.00037 * 20 18 16 24 24 C 1.38235 * 120.00004 * 0.25588 * 14 13 12 25 25 C 1.38240 * 120.00140 * 359.47385 * 24 14 13 26 26 C 1.54477 * 104.18217 * 359.89806 * 5 4 2 27 27 H 1.09002 * 110.37441 * 265.10231 * 26 5 4 28 28 C 1.53008 * 110.37274 * 142.88126 * 26 5 4 29 29 O 1.44422 * 104.80887 * 24.04521 * 26 5 4 30 30 H 1.09007 * 109.46853 * 299.14613 * 1 2 3 31 31 H 1.08995 * 109.47061 * 59.14595 * 1 2 3 32 32 H 1.08994 * 109.46832 * 179.15140 * 1 2 3 33 33 H 1.08999 * 110.61327 * 98.63786 * 4 2 1 34 34 H 1.08998 * 110.55405 * 335.82923 * 4 2 1 35 35 H 0.97004 * 119.99604 * 278.30684 * 7 5 4 36 36 H 1.07998 * 120.00196 * 359.97349 * 12 11 8 37 37 H 1.07998 * 119.99795 * 179.97438 * 13 12 11 38 38 H 1.09004 * 109.47035 * 330.00312 * 15 14 13 39 39 H 1.08997 * 109.47667 * 209.99981 * 15 14 13 40 40 H 0.96998 * 120.00124 * 180.02562 * 19 18 16 41 41 H 1.07997 * 119.99995 * 179.72713 * 24 14 13 42 42 H 1.07998 * 119.99999 * 180.27334 * 25 24 14 43 43 H 1.09003 * 109.47059 * 59.99437 * 28 26 5 44 44 H 1.09000 * 109.47144 * 180.02562 * 28 26 5 45 45 H 1.09000 * 109.46798 * 299.99646 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0216 0.0000 4 6 2.0694 -0.7739 -1.2273 5 6 3.3179 -1.5057 -0.6857 6 1 4.2121 -1.1794 -1.2167 7 7 3.1536 -2.9567 -0.8029 8 16 3.8315 -3.7664 -2.0786 9 8 3.4722 -3.0446 -3.2486 10 8 3.5262 -5.1413 -1.8890 11 6 5.5801 -3.6186 -1.9201 12 6 6.2919 -4.5648 -1.2068 13 6 7.6638 -4.4485 -1.0821 14 6 8.3238 -3.3863 -1.6710 15 6 9.8192 -3.2591 -1.5346 16 6 10.4907 -3.9814 -2.6741 17 1 9.8944 -4.4820 -3.4225 18 6 11.8666 -4.0031 -2.7612 19 7 12.4527 -4.6330 -3.7559 20 14 12.8982 -3.1379 -1.4664 21 1 13.2013 -4.0832 -0.3619 22 1 12.1462 -1.9749 -0.9302 23 1 14.1672 -2.6675 -2.0776 24 6 7.6113 -2.4374 -2.3803 25 6 6.2402 -2.5567 -2.5098 26 6 3.3873 -1.0870 0.7996 27 1 4.0540 -0.2335 0.9225 28 6 3.8602 -2.2593 1.6619 29 8 2.0328 -0.7235 1.1444 30 1 -0.3633 0.5005 0.8976 31 1 -0.3633 0.5270 -0.8822 32 1 -0.3633 -1.0275 -0.0152 33 1 2.3467 -0.0842 -2.0244 34 1 1.3299 -1.4918 -1.5822 35 1 2.6476 -3.4432 -0.1333 36 1 5.7763 -5.3945 -0.7463 37 1 8.2198 -5.1876 -0.5244 38 1 10.1363 -3.6984 -0.5887 39 1 10.0979 -2.2057 -1.5575 40 1 13.4206 -4.6485 -3.8170 41 1 8.1264 -1.6051 -2.8367 42 1 5.6842 -1.8178 -3.0677 43 1 4.8511 -2.5744 1.3348 44 1 3.9034 -1.9483 2.7057 45 1 3.1624 -3.0903 1.5593 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885333346.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:09 Heat of formation + Delta-G solvation = -125.749618 kcal Electronic energy + Delta-G solvation = -27706.009506 eV Core-core repulsion = 23814.106927 eV Total energy + Delta-G solvation = -3891.902578 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.85374 -40.25365 -38.35943 -36.99149 -36.01036 -35.53435 -33.56336 -33.53804 -31.97238 -31.12303 -29.71307 -29.49487 -25.29200 -24.85633 -23.75716 -22.36557 -22.24188 -21.76251 -20.70126 -19.18256 -19.02866 -18.57015 -17.54237 -17.03965 -16.76346 -16.60291 -16.39624 -15.98652 -15.91024 -15.51172 -15.33888 -14.64143 -14.48333 -14.35962 -14.18870 -14.09063 -13.65841 -13.62536 -13.44818 -13.39327 -13.26908 -13.17799 -12.95533 -12.74976 -12.60336 -12.56725 -12.52357 -12.07974 -12.06594 -11.92931 -11.91164 -11.72118 -11.66667 -11.53368 -10.94603 -10.82725 -10.35429 -9.96163 -9.93922 -8.33597 -6.40878 -0.66692 -0.08759 0.39280 1.36452 1.38028 1.49347 1.96396 2.32521 2.52145 2.78363 2.85798 3.00952 3.29079 3.59281 3.64210 3.85192 3.95077 3.98287 4.05142 4.08474 4.20832 4.26866 4.42033 4.46372 4.47337 4.52484 4.60924 4.71979 4.78535 4.85530 4.90966 4.94674 5.00376 5.08942 5.10774 5.15408 5.18015 5.22699 5.29057 5.29513 5.34863 5.49589 5.78258 5.93509 5.98608 6.00881 6.18924 6.65983 7.23105 8.82804 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018142 B = 0.002881 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.992115 B = 9715.290742 C =10388.053507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.066 3.934 3 H 0.084 0.916 4 C -0.168 4.168 5 C 0.116 3.884 6 H 0.112 0.888 7 N -1.092 6.092 8 S 2.721 3.279 9 O -0.978 6.978 10 O -0.987 6.987 11 C -0.697 4.697 12 C -0.020 4.020 13 C -0.153 4.153 14 C -0.001 4.001 15 C 0.011 3.989 16 C -0.526 4.526 17 H 0.026 0.974 18 C 0.008 3.992 19 N -0.948 5.948 20 Si 0.953 3.047 21 H -0.265 1.265 22 H -0.240 1.240 23 H -0.285 1.285 24 C -0.151 4.151 25 C -0.022 4.022 26 C 0.068 3.932 27 H 0.094 0.906 28 C -0.150 4.150 29 O -0.384 6.384 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.428 0.572 36 H 0.153 0.847 37 H 0.133 0.867 38 H 0.039 0.961 39 H 0.042 0.958 40 H 0.269 0.731 41 H 0.135 0.865 42 H 0.158 0.842 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.530 11.257 11.810 27.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.009 3.991 3 H 0.101 0.899 4 C -0.208 4.208 5 C 0.008 3.992 6 H 0.130 0.870 7 N -0.855 5.855 8 S 2.811 3.189 9 O -0.968 6.968 10 O -0.978 6.978 11 C -0.785 4.785 12 C -0.039 4.039 13 C -0.172 4.172 14 C -0.001 4.001 15 C -0.026 4.026 16 C -0.563 4.563 17 H 0.044 0.956 18 C -0.189 4.189 19 N -0.588 5.588 20 Si 0.776 3.224 21 H -0.190 1.190 22 H -0.163 1.163 23 H -0.211 1.211 24 C -0.170 4.170 25 C -0.041 4.041 26 C 0.009 3.991 27 H 0.112 0.888 28 C -0.207 4.207 29 O -0.304 6.304 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.119 0.881 34 H 0.101 0.899 35 H 0.267 0.733 36 H 0.171 0.829 37 H 0.151 0.849 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.153 0.847 42 H 0.175 0.825 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -22.846 10.810 11.135 27.619 hybrid contribution 1.626 -0.176 0.282 1.659 sum -21.221 10.635 11.417 26.339 Atomic orbital electron populations 1.21820 0.92532 1.02791 1.03181 1.23190 0.96010 0.95746 0.84170 0.89858 1.23650 0.97538 1.00546 0.99027 1.22339 0.99720 0.78879 0.98212 0.87014 1.55404 1.68311 1.16182 1.45627 1.00913 0.72948 0.72054 0.72937 1.93548 1.82304 1.73983 1.46975 1.93545 1.84281 1.33760 1.86187 1.30731 1.26124 1.06334 1.15299 1.21008 0.94023 0.95867 0.92997 1.21346 0.94765 0.98647 1.02448 1.20582 0.96348 0.92588 0.90582 1.18830 0.89029 0.97996 0.96725 1.21067 0.91796 1.33907 1.09564 0.95557 1.26017 0.99265 0.95639 0.97989 1.70060 1.10669 1.44542 1.33482 0.85618 0.77868 0.80145 0.78801 1.18992 1.16297 1.21079 1.21355 0.94434 1.00686 1.00536 1.21063 0.94488 0.95142 0.93447 1.23289 0.85051 0.98529 0.92221 0.88847 1.21807 1.01871 0.97111 0.99909 1.89164 1.27326 1.74915 1.39007 0.91838 0.89646 0.92456 0.88127 0.89856 0.73343 0.82934 0.84918 0.94272 0.93970 0.92246 0.84668 0.82489 0.90427 0.91417 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.53 71.98 0.69 -0.92 16 2 C 0.07 0.85 3.93 31.21 0.12 0.97 16 3 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 4 C -0.17 -2.27 6.44 31.72 0.20 -2.07 16 5 C 0.12 1.70 3.50 46.01 0.16 1.86 16 6 H 0.11 1.45 7.38 -2.39 -0.02 1.43 16 7 N -1.09 -18.04 4.68 -165.16 -0.77 -18.82 16 8 S 2.72 65.48 5.66 -56.49 -0.32 65.16 16 9 O -0.98 -27.67 17.04 -128.00 -2.18 -29.85 16 10 O -0.99 -29.15 17.28 -128.00 -2.21 -31.36 16 11 C -0.70 -19.04 5.87 22.27 0.13 -18.91 16 12 C -0.02 -0.58 9.52 22.27 0.21 -0.36 16 13 C -0.15 -5.24 9.70 22.27 0.22 -5.02 16 14 C 0.00 -0.03 5.07 -19.87 -0.10 -0.13 16 15 C 0.01 0.50 4.17 29.10 0.12 0.62 16 16 C -0.53 -29.28 9.65 25.60 0.25 -29.03 16 17 H 0.03 1.66 7.98 -2.91 -0.02 1.64 16 18 C 0.01 0.47 5.47 84.65 0.46 0.94 16 19 N -0.95 -58.23 13.96 21.45 0.30 -57.93 16 20 Si 0.95 41.77 27.47 68.60 1.88 43.66 16 21 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.24 -9.46 6.54 99.48 0.65 -8.81 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 C -0.15 -5.05 9.70 22.27 0.22 -4.83 16 25 C -0.02 -0.62 8.96 22.27 0.20 -0.42 16 26 C 0.07 0.95 3.88 31.10 0.12 1.07 16 27 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 28 C -0.15 -2.04 8.92 71.98 0.64 -1.39 16 29 O -0.38 -6.39 11.04 -148.98 -1.64 -8.03 16 30 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 33 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.08 1.24 7.69 -2.39 -0.02 1.22 16 35 H 0.43 5.83 7.07 -96.74 -0.68 5.15 16 36 H 0.15 3.71 7.62 -2.91 -0.02 3.69 16 37 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 38 H 0.04 1.63 7.51 -2.39 -0.02 1.61 16 39 H 0.04 1.76 7.14 -2.39 -0.02 1.74 16 40 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 41 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 42 H 0.16 3.49 7.62 -2.91 -0.02 3.47 16 43 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.07 0.87 6.42 -2.39 -0.02 0.86 16 Total: -1.00 -73.89 378.19 -1.05 -74.94 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.25 Total: 19.86 kcal Atomic # 6 Polarization: -61.28 SS G_CDS: 3.64 Total: -57.63 kcal Atomic # 7 Polarization: -76.27 SS G_CDS: -0.47 Total: -76.75 kcal Atomic # 8 Polarization: -63.20 SS G_CDS: -6.04 Total: -69.24 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 1.88 Total: 43.66 kcal Atomic # 16 Polarization: 65.48 SS G_CDS: -0.32 Total: 65.16 kcal Total: -73.89 -1.05 -74.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885333346.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.809 kcal (2) G-P(sol) polarization free energy of solvation -73.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds