Wall clock time and date at job start Tue Mar 31 2020 22:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47178 * 247.41428 * 3 2 1 5 5 C 1.37100 * 119.99712 * 86.31287 * 4 3 2 6 6 H 1.08006 * 120.00093 * 214.68272 * 5 4 3 7 7 C 1.38944 * 120.00221 * 34.68000 * 5 4 3 8 8 N 1.31416 * 119.99839 * 27.32532 * 7 5 4 9 9 Si 1.86805 * 120.00340 * 207.32641 * 7 5 4 10 10 H 1.48495 * 109.46887 * 59.99896 * 9 7 5 11 11 H 1.48498 * 109.46797 * 300.00168 * 9 7 5 12 12 H 1.48494 * 109.47260 * 180.02562 * 9 7 5 13 13 C 1.34777 * 120.00092 * 266.31415 * 4 3 2 14 14 O 1.21294 * 119.99722 * 184.35578 * 13 4 3 15 15 C 1.50694 * 120.00129 * 4.35875 * 13 4 3 16 16 H 1.09005 * 109.37641 * 5.50603 * 15 13 4 17 17 C 1.50733 * 109.37473 * 245.74014 * 15 13 4 18 18 C 1.38125 * 119.61209 * 78.71408 * 17 15 13 19 19 C 1.38299 * 120.17890 * 180.33760 * 18 17 15 20 20 C 1.38380 * 120.40404 * 359.97438 * 19 18 17 21 21 C 1.37962 * 120.05454 * 359.86298 * 20 19 18 22 22 C 1.39477 * 120.77892 * 258.73398 * 17 15 13 23 23 C 1.48071 * 120.07075 * 359.00387 * 22 17 15 24 24 O 1.21470 * 121.17294 * 190.59490 * 23 22 17 25 25 O 1.35781 * 117.65908 * 10.56976 * 23 22 17 26 26 C 1.45089 * 114.18799 * 320.63192 * 25 23 22 27 27 C 1.53337 * 113.28732 * 189.79355 * 26 25 23 28 28 C 1.53874 * 86.96227 * 89.38380 * 27 26 25 29 29 C 1.53327 * 113.44173 * 287.60051 * 26 25 23 30 30 H 4.40643 * 5.51322 * 180.02562 * 4 1 2 31 31 H 1.09001 * 109.46714 * 127.41825 * 3 2 1 32 32 H 1.08990 * 109.47530 * 7.41770 * 3 2 1 33 33 H 0.96998 * 120.00092 * 6.33155 * 8 7 5 34 34 H 1.08001 * 119.90566 * 0.29910 * 18 17 15 35 35 H 1.08009 * 119.79489 * 180.02562 * 19 18 17 36 36 H 1.08001 * 119.97300 * 179.85226 * 20 19 18 37 37 H 1.08002 * 120.11683 * 179.97438 * 21 20 19 38 38 H 1.09001 * 113.63323 * 203.89812 * 27 26 25 39 39 H 1.08999 * 113.63329 * 334.86848 * 27 26 25 40 40 H 1.08988 * 113.60129 * 270.48245 * 28 27 26 41 41 H 1.08996 * 113.66909 * 139.63090 * 28 27 26 42 42 H 1.08991 * 113.63124 * 25.28262 * 29 26 25 43 43 H 1.08996 * 113.63129 * 156.24367 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.5314 1.2753 5 6 3.2909 -0.3046 2.3505 6 1 3.0970 0.0579 3.3493 7 6 3.6993 -1.6183 2.1555 8 7 4.4294 -1.9308 1.1084 9 14 3.2106 -2.9403 3.3815 10 1 1.7299 -3.0310 3.4475 11 1 3.7456 -2.5936 4.7227 12 1 3.7683 -4.2469 2.9492 13 6 3.4289 1.8413 1.3915 14 8 3.9073 2.2662 2.4219 15 6 3.1641 2.7782 0.2412 16 1 2.6475 2.2389 -0.5529 17 6 4.4739 3.3078 -0.2841 18 6 5.2469 2.5174 -1.1120 19 6 6.4540 2.9889 -1.5950 20 6 6.8980 4.2546 -1.2549 21 6 6.1349 5.0565 -0.4316 22 6 4.9147 4.5866 0.0564 23 6 4.0840 5.4508 0.9257 24 8 4.3489 6.6260 1.0814 25 8 3.0155 4.8835 1.5422 26 6 2.2901 3.9333 0.7201 27 6 0.9611 3.4856 1.3402 28 6 0.3148 4.6790 0.6150 29 6 1.4714 4.5927 -0.3961 30 1 -1.0501 -0.0003 -0.0002 31 1 3.0089 0.6253 -0.8162 32 1 3.0098 -1.0181 -0.1327 33 1 4.7603 -1.2326 0.5220 34 1 4.9080 1.5282 -1.3823 35 1 7.0533 2.3657 -2.2424 36 1 7.8429 4.6149 -1.6341 37 1 6.4807 6.0444 -0.1651 38 1 0.6155 2.5165 0.9805 39 1 0.9359 3.5689 2.4267 40 1 0.3151 5.5979 1.2010 41 1 -0.6600 4.4528 0.1831 42 1 1.8560 5.5649 -0.7040 43 1 1.2676 3.9309 -1.2378 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890401346.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:25 Heat of formation + Delta-G solvation = -5.305343 kcal Electronic energy + Delta-G solvation = -30798.265397 eV Core-core repulsion = 26776.141723 eV Total energy + Delta-G solvation = -4022.123674 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.85814 -40.65835 -39.95565 -39.31634 -37.35922 -36.86848 -34.64458 -33.88177 -32.98731 -32.32554 -29.89145 -28.48309 -27.07445 -26.45676 -25.52200 -25.00300 -23.33609 -22.43178 -21.24693 -20.10286 -19.95655 -19.05436 -18.62572 -18.14836 -18.04472 -17.41479 -17.00376 -16.75157 -16.17107 -16.08070 -15.91313 -15.64788 -15.49011 -15.27958 -14.92293 -14.73185 -14.39216 -14.12784 -13.91555 -13.74487 -13.59594 -13.54696 -13.21679 -12.95712 -12.73929 -12.67561 -12.23039 -12.09591 -12.00253 -11.96282 -11.93230 -11.46702 -11.39445 -11.17865 -11.04901 -10.85417 -10.64304 -10.18708 -9.91789 -9.81305 -8.78051 -6.17981 -0.55984 0.15138 1.07971 1.45964 1.52214 1.67863 1.79274 1.83226 1.90319 1.95993 2.37547 2.53421 2.80902 2.92804 2.99382 3.10030 3.25615 3.31645 3.55199 3.57491 3.67830 3.75515 3.90497 3.98883 4.03728 4.13838 4.23923 4.33704 4.39332 4.53554 4.55429 4.60822 4.71820 4.78180 4.82106 4.87322 4.93446 5.09151 5.14283 5.16987 5.24689 5.30197 5.73318 5.76127 5.83344 5.86848 6.12574 6.53711 6.75551 6.81978 7.25918 7.78528 8.44599 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011911 B = 0.005156 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.176445 B = 5429.095364 C = 6448.236121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.231 4.231 3 C 0.187 3.813 4 N -0.450 5.450 5 C -0.418 4.418 6 H 0.049 0.951 7 C -0.014 4.014 8 N -0.878 5.878 9 Si 1.110 2.890 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.270 1.270 13 C 0.471 3.529 14 O -0.606 6.606 15 C -0.081 4.081 16 H 0.137 0.863 17 C -0.035 4.035 18 C -0.135 4.135 19 C -0.069 4.069 20 C -0.121 4.121 21 C -0.062 4.062 22 C -0.188 4.188 23 C 0.529 3.471 24 O -0.489 6.489 25 O -0.344 6.344 26 C 0.095 3.905 27 C -0.129 4.129 28 C -0.115 4.115 29 C -0.141 4.141 30 H 0.256 0.744 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.268 0.732 34 H 0.140 0.860 35 H 0.170 0.830 36 H 0.173 0.827 37 H 0.144 0.856 38 H 0.110 0.890 39 H 0.056 0.944 40 H 0.081 0.919 41 H 0.112 0.888 42 H 0.076 0.924 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.628 6.626 -13.144 15.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.232 4.232 3 C 0.065 3.935 4 N -0.169 5.169 5 C -0.546 4.546 6 H 0.067 0.933 7 C -0.218 4.218 8 N -0.512 5.512 9 Si 0.931 3.069 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.195 1.195 13 C 0.261 3.739 14 O -0.490 6.490 15 C -0.102 4.102 16 H 0.155 0.845 17 C -0.036 4.036 18 C -0.153 4.153 19 C -0.086 4.086 20 C -0.139 4.139 21 C -0.080 4.080 22 C -0.190 4.190 23 C 0.374 3.626 24 O -0.375 6.375 25 O -0.263 6.263 26 C 0.058 3.942 27 C -0.166 4.166 28 C -0.152 4.152 29 C -0.178 4.178 30 H 0.272 0.728 31 H 0.125 0.875 32 H 0.117 0.883 33 H 0.079 0.921 34 H 0.158 0.842 35 H 0.187 0.813 36 H 0.191 0.809 37 H 0.162 0.838 38 H 0.128 0.872 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.131 0.869 42 H 0.094 0.906 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.239 5.777 -12.069 14.036 hybrid contribution 0.208 1.553 0.534 1.655 sum -4.031 7.330 -11.534 14.249 Atomic orbital electron populations 1.25653 0.96362 0.99516 0.97912 1.23753 0.95199 1.01871 1.02425 1.18769 0.85218 1.02839 0.86680 1.43661 1.55943 1.06200 1.11080 1.20106 1.50909 0.95560 0.87992 0.93266 1.27482 0.92545 0.99938 1.01868 1.70881 1.26732 1.37440 1.16183 0.82974 0.77297 0.73479 0.73131 1.19343 1.20801 1.19496 1.20481 0.80890 0.83711 0.88867 1.90556 1.48377 1.76887 1.33162 1.20837 0.95432 0.96051 0.97925 0.84511 1.19665 0.95457 0.92810 0.95695 1.21347 0.96000 0.99938 0.97966 1.21845 0.94105 0.95864 0.96814 1.21611 1.00990 0.93887 0.97395 1.21517 0.91350 1.00739 0.94378 1.20028 0.99108 0.95792 1.04066 1.21293 0.79766 0.85573 0.75958 1.90709 1.71538 1.15927 1.59349 1.86882 1.41856 1.56112 1.41406 1.23200 0.90254 0.86896 0.93833 1.23117 0.91540 1.01099 1.00874 1.22797 0.98998 0.97041 0.96356 1.23603 0.95551 1.01837 0.96787 0.72822 0.87496 0.88256 0.92135 0.84215 0.81258 0.80911 0.83829 0.87191 0.92520 0.90080 0.86914 0.90556 0.85105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.83 18.79 74.32 1.40 -3.43 16 2 C -0.23 -7.99 12.95 31.12 0.40 -7.59 16 3 C 0.19 7.29 4.73 84.57 0.40 7.69 16 4 N -0.45 -21.68 2.30 -645.43 -1.49 -23.16 16 5 C -0.42 -23.26 8.82 84.04 0.74 -22.52 16 6 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 7 C -0.01 -0.75 4.86 84.92 0.41 -0.34 16 8 N -0.88 -46.13 12.15 21.66 0.26 -45.87 16 9 Si 1.11 46.95 30.00 68.60 2.06 49.00 16 10 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 11 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 12 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 13 C 0.47 22.61 5.73 87.66 0.50 23.11 16 14 O -0.61 -35.79 16.31 -1.03 -0.02 -35.81 16 15 C -0.08 -2.92 1.59 -12.43 -0.02 -2.94 16 16 H 0.14 4.09 5.19 -2.38 -0.01 4.07 16 17 C -0.04 -1.21 5.03 -19.58 -0.10 -1.31 16 18 C -0.13 -3.80 9.67 22.26 0.22 -3.58 16 19 C -0.07 -1.49 10.03 22.32 0.22 -1.26 16 20 C -0.12 -2.57 10.04 22.24 0.22 -2.34 16 21 C -0.06 -1.74 9.61 22.52 0.22 -1.53 16 22 C -0.19 -6.66 5.84 -20.05 -0.12 -6.77 16 23 C 0.53 21.44 7.36 70.43 0.52 21.96 16 24 O -0.49 -20.69 17.34 19.80 0.34 -20.34 16 25 O -0.34 -14.61 9.91 -65.39 -0.65 -15.26 16 26 C 0.10 3.29 0.51 -10.72 -0.01 3.28 16 27 C -0.13 -4.09 6.83 31.00 0.21 -3.88 16 28 C -0.11 -2.63 8.02 31.18 0.25 -2.38 16 29 C -0.14 -3.39 7.26 31.00 0.23 -3.17 16 30 H 0.26 4.30 7.80 -4.41 -0.03 4.27 16 31 H 0.11 3.36 5.20 -2.39 -0.01 3.35 16 32 H 0.10 4.31 5.30 -2.39 -0.01 4.30 16 33 H 0.27 13.98 7.19 -92.71 -0.67 13.32 16 34 H 0.14 3.61 7.22 -2.91 -0.02 3.59 16 35 H 0.17 2.38 8.06 -2.91 -0.02 2.35 16 36 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 37 H 0.14 3.73 7.73 -2.91 -0.02 3.71 16 38 H 0.11 3.34 7.07 -2.39 -0.02 3.32 16 39 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.08 1.86 7.86 -2.39 -0.02 1.84 16 43 H 0.13 2.36 7.93 -2.39 -0.02 2.34 16 Total: -1.00 -79.71 363.84 7.37 -72.34 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: 1.16 Total: 26.13 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 5.70 Total: -7.02 kcal Atomic # 7 Polarization: -67.81 SS G_CDS: -1.22 Total: -69.03 kcal Atomic # 8 Polarization: -71.10 SS G_CDS: -0.32 Total: -71.42 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.06 Total: 49.00 kcal Total: -79.71 7.37 -72.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890401346.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.033 kcal (2) G-P(sol) polarization free energy of solvation -79.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds