Wall clock time and date at job start Tue Mar 31 2020 22:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47412 * 2 1 4 4 N 1.46505 * 109.46954 * 120.00344 * 2 1 3 5 5 C 1.46500 * 119.99579 * 305.06553 * 4 2 1 6 6 C 1.50698 * 109.46976 * 96.10570 * 5 4 2 7 7 C 1.38238 * 119.99820 * 83.02052 * 6 5 4 8 8 C 1.38239 * 119.99770 * 179.97438 * 7 6 5 9 9 C 1.38230 * 119.99960 * 359.97438 * 8 7 6 10 10 C 1.38240 * 120.00103 * 0.26869 * 9 8 7 11 11 C 1.38234 * 120.00042 * 359.51554 * 10 9 8 12 12 C 1.34778 * 120.00150 * 125.06781 * 4 2 1 13 13 O 1.21278 * 119.99600 * 174.84228 * 12 4 2 14 14 C 1.50700 * 119.99965 * 354.84551 * 12 4 2 15 15 S 1.81397 * 109.46873 * 185.00002 * 14 12 4 16 16 O 1.42096 * 108.57926 * 294.48601 * 15 14 12 17 17 O 1.42100 * 108.57805 * 65.51011 * 15 14 12 18 18 C 1.81395 * 101.92231 * 179.97438 * 15 14 12 19 19 C 1.50700 * 109.47318 * 180.02562 * 18 15 14 20 20 H 1.07995 * 120.00101 * 359.97438 * 19 18 15 21 21 C 1.37878 * 119.99718 * 180.02562 * 19 18 15 22 22 N 1.31514 * 120.00487 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99719 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46970 * 59.99772 * 23 21 19 25 25 H 1.48495 * 109.46851 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.46988 * 299.99739 * 23 21 19 27 27 H 1.08996 * 109.47361 * 306.77992 * 1 2 3 28 28 H 1.09008 * 109.46932 * 66.77978 * 1 2 3 29 29 H 1.09001 * 109.47461 * 186.77666 * 1 2 3 30 30 H 1.09005 * 109.47312 * 239.99993 * 2 1 3 31 31 H 1.08999 * 109.46943 * 184.87559 * 3 2 1 32 32 H 1.08998 * 109.46900 * 304.87381 * 3 2 1 33 33 H 1.08997 * 109.46628 * 64.87274 * 3 2 1 34 34 H 1.09001 * 109.47211 * 336.10380 * 5 4 2 35 35 H 1.09000 * 109.47075 * 216.10875 * 5 4 2 36 36 H 1.08000 * 120.00061 * 359.97438 * 7 6 5 37 37 H 1.07994 * 119.99949 * 179.97438 * 8 7 6 38 38 H 1.08007 * 120.00286 * 180.02562 * 9 8 7 39 39 H 1.08001 * 119.99864 * 179.72955 * 10 9 8 40 40 H 1.07997 * 120.00202 * 180.27387 * 11 10 9 41 41 H 1.08995 * 109.46816 * 304.99861 * 14 12 4 42 42 H 1.09001 * 109.46889 * 65.00072 * 14 12 4 43 43 H 1.09003 * 109.47475 * 300.00185 * 18 15 14 44 44 H 1.09007 * 109.47332 * 59.99829 * 18 15 14 45 45 H 0.96998 * 119.99953 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.5751 -0.2582 2.5239 6 6 0.4175 -1.1135 2.9704 7 6 0.6524 -2.3450 3.5528 8 6 -0.4095 -3.1294 3.9629 9 6 -1.7061 -2.6820 3.7910 10 6 -1.9410 -1.4527 3.2040 11 6 -0.8791 -0.6664 2.7980 12 6 2.8751 -1.7240 1.0751 13 8 3.3521 -2.2354 2.0660 14 6 3.2406 -2.2437 -0.2914 15 16 4.2851 -3.7166 -0.1186 16 8 5.5159 -3.3314 0.4781 17 8 3.5158 -4.7492 0.4825 18 6 4.5955 -4.1611 -1.8496 19 6 5.4657 -5.3902 -1.9044 20 1 5.7992 -5.8570 -0.9894 21 6 5.8371 -5.9181 -3.1228 22 7 5.4315 -5.3494 -4.2371 23 14 6.9165 -7.4413 -3.1908 24 1 6.2291 -8.5660 -2.5069 25 1 7.1704 -7.8052 -4.6079 26 1 8.2075 -7.1638 -2.5115 27 1 -0.3634 0.6153 0.8231 28 1 -0.3633 0.4052 -0.9445 29 1 -0.3634 -1.0205 0.1213 30 1 1.8933 -0.5138 -0.8900 31 1 3.1265 1.4436 -0.0873 32 1 1.6072 1.9809 -0.8431 33 1 1.7497 1.9304 0.9304 34 1 1.2608 0.7846 2.4802 35 1 2.3971 -0.3604 3.2324 36 1 1.6654 -2.6943 3.6875 37 1 -0.2261 -4.0916 4.4175 38 1 -2.5358 -3.2946 4.1118 39 1 -2.9542 -1.1051 3.0658 40 1 -1.0625 0.2960 2.3434 41 1 2.3329 -2.5038 -0.8358 42 1 3.7850 -1.4744 -0.8390 43 1 3.6477 -4.3650 -2.3480 44 1 5.0999 -3.3356 -2.3520 45 1 5.6925 -5.7211 -5.0942 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905265743.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:54 Heat of formation + Delta-G solvation = -80.925198 kcal Electronic energy + Delta-G solvation = -27960.785933 eV Core-core repulsion = 24070.827088 eV Total energy + Delta-G solvation = -3889.958846 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.53512 -38.91499 -36.88200 -35.93358 -34.95023 -33.34834 -32.99162 -31.54456 -30.92579 -29.97307 -29.01058 -27.48912 -26.16104 -23.54321 -22.66374 -22.21649 -21.72555 -19.24033 -17.90172 -17.57366 -17.10287 -16.86738 -16.24205 -15.90927 -15.46993 -15.34171 -14.98718 -14.87822 -14.60627 -14.37977 -14.26140 -13.73260 -13.62498 -13.49547 -13.29247 -12.83977 -12.53771 -12.47946 -12.33648 -12.28602 -12.13981 -11.86485 -11.64136 -11.41432 -11.39489 -11.26802 -11.04072 -10.98902 -10.87888 -10.86081 -10.61587 -10.27495 -10.10989 -9.81040 -9.10193 -8.98260 -8.95313 -8.80066 -8.70180 -6.33583 -4.42724 0.86572 1.18087 1.34013 2.50357 2.82548 3.26353 3.27628 3.33726 3.75402 3.78690 4.14601 4.28116 4.45683 4.60853 4.65861 4.68890 4.81973 4.86172 4.91259 4.96224 4.99283 5.03450 5.13869 5.28999 5.31437 5.33726 5.43739 5.45175 5.50364 5.54068 5.59095 5.61170 5.82091 5.91015 5.96627 6.00034 6.32091 6.35090 6.47467 6.54149 6.61530 6.65559 6.92570 7.14133 7.48660 7.74266 7.98754 8.59147 9.24405 10.78378 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016185 B = 0.003153 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.539340 B = 8877.760899 C = 9589.620221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 C -0.165 4.165 4 N -0.599 5.599 5 C 0.154 3.846 6 C -0.109 4.109 7 C -0.095 4.095 8 C -0.121 4.121 9 C -0.117 4.117 10 C -0.129 4.129 11 C -0.109 4.109 12 C 0.549 3.451 13 O -0.523 6.523 14 C -0.677 4.677 15 S 2.422 3.578 16 O -0.940 6.940 17 O -0.943 6.943 18 C -0.406 4.406 19 C -0.529 4.529 20 H 0.073 0.927 21 C 0.075 3.925 22 N -0.883 5.883 23 Si 0.906 3.094 24 H -0.269 1.269 25 H -0.282 1.282 26 H -0.268 1.268 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.134 0.866 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.152 0.848 42 H 0.154 0.846 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.910 15.043 8.347 22.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.019 3.981 3 C -0.223 4.223 4 N -0.332 5.332 5 C 0.032 3.968 6 C -0.110 4.110 7 C -0.113 4.113 8 C -0.139 4.139 9 C -0.136 4.136 10 C -0.147 4.147 11 C -0.128 4.128 12 C 0.336 3.664 13 O -0.399 6.399 14 C -0.799 4.799 15 S 2.602 3.398 16 O -0.938 6.938 17 O -0.940 6.940 18 C -0.541 4.541 19 C -0.568 4.568 20 H 0.091 0.909 21 C -0.130 4.130 22 N -0.519 5.519 23 Si 0.732 3.268 24 H -0.194 1.194 25 H -0.207 1.207 26 H -0.193 1.193 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.118 0.882 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.152 0.848 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.170 0.830 42 H 0.172 0.828 43 H 0.103 0.897 44 H 0.103 0.897 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.402 14.460 9.498 22.511 hybrid contribution -0.040 -0.177 -1.112 1.127 sum -14.442 14.282 8.386 21.975 Atomic orbital electron populations 1.22395 0.94499 1.03103 1.02551 1.21337 0.94938 0.93659 0.88195 1.22204 1.02110 0.95417 1.02578 1.47959 1.45634 1.32910 1.06745 1.20329 0.95347 0.96816 0.84295 1.20202 0.94649 0.96290 0.99870 1.21424 1.00303 0.93427 0.96163 1.21242 0.92673 0.99883 1.00102 1.21183 0.96884 0.96302 0.99204 1.21079 0.98704 0.95088 0.99848 1.21114 0.92052 0.99846 0.99743 1.19427 0.78160 0.79592 0.89187 1.90803 1.52501 1.57567 1.38997 1.31183 1.19306 1.26136 1.03319 1.08544 0.75143 0.74897 0.81237 1.93467 1.41175 1.82613 1.76508 1.93466 1.72120 1.51973 1.76426 1.27609 1.06714 1.06783 1.12998 1.20325 1.32395 1.09853 0.94227 0.90915 1.24925 0.95552 0.97599 0.94964 1.69932 1.44063 1.40228 0.97715 0.86403 0.80888 0.82165 0.77380 1.19356 1.20745 1.19343 0.91730 0.91332 0.91664 0.88228 0.91866 0.91065 0.92120 0.89401 0.88893 0.84777 0.85915 0.86271 0.86296 0.86032 0.83017 0.82770 0.89683 0.89665 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 7.78 37.16 0.29 -1.00 16 2 C 0.12 1.11 3.14 -67.93 -0.21 0.89 16 3 C -0.17 -1.19 9.32 37.16 0.35 -0.84 16 4 N -0.60 -7.33 2.37 -167.47 -0.40 -7.73 16 5 C 0.15 1.69 4.79 -5.19 -0.02 1.67 16 6 C -0.11 -1.27 5.11 -104.62 -0.53 -1.81 16 7 C -0.09 -1.30 9.41 -39.58 -0.37 -1.67 16 8 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 9 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 10 C -0.13 -1.22 10.05 -39.58 -0.40 -1.62 16 11 C -0.11 -1.05 7.95 -39.58 -0.31 -1.36 16 12 C 0.55 9.03 7.56 -10.98 -0.08 8.95 16 13 O -0.52 -10.53 13.71 2.26 0.03 -10.49 16 14 C -0.68 -10.36 4.61 36.01 0.17 -10.19 16 15 S 2.42 52.70 3.89 -107.50 -0.42 52.28 16 16 O -0.94 -23.45 17.84 -60.76 -1.08 -24.54 16 17 O -0.94 -23.42 18.04 -58.26 -1.05 -24.47 16 18 C -0.41 -9.57 5.56 36.01 0.20 -9.37 16 19 C -0.53 -14.72 9.13 -34.44 -0.31 -15.04 16 20 H 0.07 2.03 7.71 -52.49 -0.40 1.62 16 21 C 0.08 2.08 5.46 -17.82 -0.10 1.98 16 22 N -0.88 -24.63 13.29 55.43 0.74 -23.89 16 23 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 H 0.06 0.43 5.05 -51.93 -0.26 0.16 16 28 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 29 H 0.06 0.62 7.86 -51.93 -0.41 0.21 16 30 H 0.10 0.87 5.79 -51.93 -0.30 0.57 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.40 6.77 -51.93 -0.35 0.04 16 34 H 0.09 0.70 6.38 -51.93 -0.33 0.36 16 35 H 0.09 1.13 7.53 -51.93 -0.39 0.74 16 36 H 0.13 2.10 6.73 -52.49 -0.35 1.75 16 37 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 38 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 39 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.12 0.88 6.00 -52.49 -0.32 0.57 16 41 H 0.15 1.85 7.67 -51.93 -0.40 1.45 16 42 H 0.15 1.82 7.90 -51.92 -0.41 1.41 16 43 H 0.09 1.92 8.14 -51.92 -0.42 1.49 16 44 H 0.09 1.91 8.14 -51.92 -0.42 1.49 16 45 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 378.56 15.07 5.70 5.70 Total: -1.00 -36.82 378.56 -10.09 -46.91 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.44 Total: 3.05 kcal Atomic # 6 Polarization: -30.75 SS G_CDS: -2.15 Total: -32.89 kcal Atomic # 7 Polarization: -31.96 SS G_CDS: 0.34 Total: -31.62 kcal Atomic # 8 Polarization: -57.40 SS G_CDS: -2.10 Total: -59.50 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 52.70 SS G_CDS: -0.42 Total: 52.28 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.82 -10.09 -46.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265743.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.018 kcal (2) G-P(sol) polarization free energy of solvation -36.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds